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Lundin RM, Falcao VP, Kannangara S, Eakin CW, Abdar M, O'Neill J, Khosravi A, Eyre H, Nahavandi S, Loo C, Berk M. Machine Learning in Electroconvulsive Therapy: A Systematic Review. J ECT 2024; 40:245-253. [PMID: 38857315 DOI: 10.1097/yct.0000000000001009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
Abstract
ABSTRACT Despite years of research, we are still not able to reliably predict who might benefit from electroconvulsive therapy (ECT) treatment. As we exhaust what is possible using traditional statistical analysis, ECT remains a good candidate for machine learning approaches due to the large data sets with data captured through electroencephalography (EEG) and other objective measures. A systematic review of 6 databases led to the full-text examination of 26 articles using machine learning approaches in examining data predicting response to ECT treatment. The identified articles used a wide variety of data types covering structural and functional imaging data (n = 15), clinical data (n = 5), a combination of clinical and imaging data (n = 2), EEG (n = 3), and social media posts (n = 1). The clinical indications in which response prediction was assessed were depression (n = 21) and psychosis (n = 4). Changes in multiple anatomical regions in the brain were identified as holding a predictive value for response to ECT. These primarily centered on the limbic system and associated networks. Clinical features predicting good response to ECT in depression included shorter duration, lower severity, higher medication dose, psychotic features, low cortisol levels, and positive family history. It has also been possible to predict the likelihood of relapse of readmission with psychosis after ECT treatment, including a better response if higher transfer entropy was calculated from EEG signals. A transdisciplinary approach with an international consortium collecting a wide range of retrospective and prospective data may help to refine and extend these outcomes and translate them into clinical practice.
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Affiliation(s)
| | | | | | - Charles W Eakin
- From the Mental Health, Drug and Alcohol Services, Barwon Health
| | - Moloud Abdar
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, Victoria, Australia
| | - John O'Neill
- Waikato District Health Board, Hamilton, New Zealand
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, Victoria, Australia
| | | | - Saeid Nahavandi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, Victoria, Australia
| | | | - Michael Berk
- IMPACT - the Institute for Mental and Physical Health and Clinical Translation, School of Medicine, Deakin University, Geelong, Victoria, Australia
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Rao S, Liu M, Huang Y, Yang H, Liang J, Lu J, Niu Y, Wang B. Anchoring temporal convolutional networks for epileptic seizure prediction. J Neural Eng 2024; 21:066008. [PMID: 39467384 DOI: 10.1088/1741-2552/ad8bf3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 10/28/2024] [Indexed: 10/30/2024]
Abstract
Objective. Accurate and timely prediction of epileptic seizures is crucial for empowering patients to mitigate their impact or prevent them altogether. Current studies predominantly focus on short-term seizure predictions, which causes the prediction time to be shorter than the onset of antiepileptic, thus failing to prevent seizures. However, longer epilepsy prediction faces the problem that as the preictal period lengthens, it increasingly resembles the interictal period, complicating differentiation.Approach. To address these issues, we employ the sample entropy method for feature extraction from electroencephalography (EEG) signals. Subsequently, we introduce the anchoring temporal convolutional networks (ATCN) model for longer-term, patient-specific epilepsy prediction. ATCN utilizes dilated causal convolutional networks to learn time-dependent features from previous data, capturing temporal causal correlations within and between samples. Additionally, the model also incorporates anchoring data to enhance the performance of epilepsy prediction further. Finally, we proposed a multilayer sliding window prediction algorithm for seizure alarms.Main results. Evaluation on the Freiburg intracranial EEG dataset shows our approach achieves 100% sensitivity, a false prediction rate (FPR) of 0.09 per hour, and an average prediction time (APT) of 98.92 min. Using the CHB-MIT scalp EEG dataset, we achieve 97.44% sensitivity, a FPR of 0.12 per hour, and an APT of 93.54 min.Significance. These results demonstrate that our approach is adequate for seizure prediction over a more extended prediction range on intracranial and scalp EEG datasets. The APT of our approach exceeds the typical onset time of antiepileptic. This approach is particularly beneficial for patients who need to take medication at regular intervals, as they may only need to take their medication when our method issues an alarm. This capability has the potential to prevent seizures, which will greatly improve patients' quality of life.
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Affiliation(s)
- Songhui Rao
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Miaomiao Liu
- School of Psychology, Shenzhen University, Shenzhen 518061, People's Republic of China
| | - Yin Huang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Hongye Yang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Jiarui Liang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Jiayu Lu
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Yan Niu
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
| | - Bin Wang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan 030024, People's Republic of China
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Sparrow R, Hatherley J, Oakley J, Bain C. Should the Use of Adaptive Machine Learning Systems in Medicine be Classified as Research? THE AMERICAN JOURNAL OF BIOETHICS : AJOB 2024; 24:58-69. [PMID: 38662360 DOI: 10.1080/15265161.2024.2337429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
A novel advantage of the use of machine learning (ML) systems in medicine is their potential to continue learning from new data after implementation in clinical practice. To date, considerations of the ethical questions raised by the design and use of adaptive machine learning systems in medicine have, for the most part, been confined to discussion of the so-called "update problem," which concerns how regulators should approach systems whose performance and parameters continue to change even after they have received regulatory approval. In this paper, we draw attention to a prior ethical question: whether the continuous learning that will occur in such systems after their initial deployment should be classified, and regulated, as medical research? We argue that there is a strong prima facie case that the use of continuous learning in medical ML systems should be categorized, and regulated, as research and that individuals whose treatment involves such systems should be treated as research subjects.
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Oliveira A, Pinto MF, Lopes F, Leal A, Teixeira CA. Classifier Combination Supported by the Sleep-Wake Cycle Improves EEG Seizure Prediction Performance. IEEE Trans Biomed Eng 2024; 71:2341-2351. [PMID: 38381628 DOI: 10.1109/tbme.2024.3368304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
OBJECTIVE Seizure prediction is a promising solution to improve the quality of life for drug-resistant patients, which concerns nearly 30% of patients with epilepsy. The present study aimed to ascertain the impact of incorporating sleep-wake information in seizure prediction. METHODS We developed five patient-specific prediction approaches that use vigilance state information differently: i) using it as an input feature, ii) building a pool of two classifiers, each with different weights to sleep/wake training samples, iii) building a pool of two classifiers, each with only sleep/wake samples, iv) changing the alarm-threshold concerning each sleep/wake state, and v) adjusting the alarm-threshold after a sleep-wake transition. We compared these approaches with a control method that did not integrate sleep-wake information. Our models were tested with data (43 seizures and 482 hours) acquired during presurgical monitoring of 17 patients from the EPILEPSIAE database. As EPILEPSIAE does not contain vigilance state annotations, we developed a sleep-wake classifier using 33 patients diagnosed with nocturnal frontal lobe epilepsy from the CAP Sleep database. RESULTS Although different patients may require different strategies, our best approach, the pool of weighted predictors, obtained 65% of patients performing above chance level with a surrogate analysis (against 41% in the control method). CONCLUSION The inclusion of vigilance state information improves seizure prediction. Higher results and testing with long-term recordings from daily-life conditions are necessary to ensure clinical acceptance. SIGNIFICANCE As automated sleep-wake detection is possible, it would be feasible to incorporate these algorithms into future devices for seizure prediction.
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Andrade I, Teixeira C, Pinto M. On the performance of seizure prediction machine learning methods across different databases: the sample and alarm-based perspectives. Front Neurosci 2024; 18:1417748. [PMID: 39077429 PMCID: PMC11284155 DOI: 10.3389/fnins.2024.1417748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 06/25/2024] [Indexed: 07/31/2024] Open
Abstract
Epilepsy affects 1% of the global population, with approximately one-third of patients resistant to anti-seizure medications (ASMs), posing risks of physical injuries and psychological issues. Seizure prediction algorithms aim to enhance the quality of life for these individuals by providing timely alerts. This study presents a patient-specific seizure prediction algorithm applied to diverse databases (EPILEPSIAE, CHB-MIT, AES, and Epilepsy Ecosystem). The proposed algorithm undergoes a standardized framework, including data preprocessing, feature extraction, training, testing, and postprocessing. Various databases necessitate adaptations in the algorithm, considering differences in data availability and characteristics. The algorithm exhibited variable performance across databases, taking into account sensitivity, FPR/h, specificity, and AUC score. This study distinguishes between sample-based approaches, which often yield better results by disregarding the temporal aspect of seizures, and alarm-based approaches, which aim to simulate real-life conditions but produce less favorable outcomes. Statistical assessment reveals challenges in surpassing chance levels, emphasizing the rarity of seizure events. Comparative analyses with existing studies highlight the complexity of standardized assessments, given diverse methodologies and dataset variations. Rigorous methodologies aiming to simulate real-life conditions produce less favorable outcomes, emphasizing the importance of realistic assumptions and comprehensive, long-term, and systematically structured datasets for future research.
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Affiliation(s)
- Inês Andrade
- University of Coimbra, Centre for Informatics and Systems, Department of Informatics Engineering, Coimbra, Portugal
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Frassineti L, Catrambone V, Lanatà A, Valenza G. Impaired brain-heart axis in focal epilepsy: Alterations in information flow and implications for seizure dynamics. Netw Neurosci 2024; 8:541-556. [PMID: 38952812 PMCID: PMC11168720 DOI: 10.1162/netn_a_00367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 02/09/2024] [Indexed: 07/03/2024] Open
Abstract
This study delves into functional brain-heart interplay (BHI) dynamics during interictal periods before and after seizure events in focal epilepsy. Our analysis focuses on elucidating the causal interaction between cortical and autonomic nervous system (ANS) oscillations, employing electroencephalography and heart rate variability series. The dataset for this investigation comprises 47 seizure events from 14 independent subjects, obtained from the publicly available Siena Dataset. Our findings reveal an impaired brain-heart axis especially in the heart-to-brain functional direction. This is particularly evident in bottom-up oscillations originating from sympathovagal activity during the transition between preictal and postictal periods. These results indicate a pivotal role of the ANS in epilepsy dynamics. Notably, the brain-to-heart information flow targeting cardiac oscillations in the low-frequency band does not display significant changes. However, there are noteworthy changes in cortical oscillations, primarily originating in central regions, influencing heartbeat oscillations in the high-frequency band. Our study conceptualizes seizures as a state of hyperexcitability and a network disease affecting both cortical and peripheral neural dynamics. Our results pave the way for a deeper understanding of BHI in epilepsy, which holds promise for the development of advanced diagnostic and therapeutic approaches also based on bodily neural activity for individuals living with epilepsy.
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Affiliation(s)
- Lorenzo Frassineti
- Department of Information Engineering, Università degli Studi di Firenze, Firenze, Italy
| | - Vincenzo Catrambone
- Department of Information Engineering and Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Pisa, Italy
| | - Antonio Lanatà
- Department of Information Engineering, Università degli Studi di Firenze, Firenze, Italy
| | - Gaetano Valenza
- Department of Information Engineering and Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Pisa, Italy
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7
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Pontes ED, Pinto M, Lopes F, Teixeira C. Concept-drifts adaptation for machine learning EEG epilepsy seizure prediction. Sci Rep 2024; 14:8204. [PMID: 38589379 PMCID: PMC11001609 DOI: 10.1038/s41598-024-57744-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 03/21/2024] [Indexed: 04/10/2024] Open
Abstract
Seizure prediction remains a challenge, with approximately 30% of patients unresponsive to conventional treatments. Addressing this issue is crucial for improving patients' quality of life, as timely intervention can mitigate the impact of seizures. In this research field, it is critical to identify the preictal interval, the transition from regular brain activity to a seizure. While previous studies have explored various Electroencephalogram (EEG) based methodologies for prediction, few have been clinically applicable. Recent studies have underlined the dynamic nature of EEG data, characterised by data changes with time, known as concept drifts, highlighting the need for automated methods to detect and adapt to these changes. In this study, we investigate the effectiveness of automatic concept drift adaptation methods in seizure prediction. Three patient-specific seizure prediction approaches with a 10-minute prediction horizon are compared: a seizure prediction algorithm incorporating a window adjustment method by optimising performance with Support Vector Machines (Backwards-Landmark Window), a seizure prediction algorithm incorporating a data-batch (seizures) selection method using a logistic regression (Seizure-batch Regression), and a seizure prediction algorithm with a dynamic integration of classifiers (Dynamic Weighted Ensemble). These methods incorporate a retraining process after each seizure and use a combination of univariate linear features and SVM classifiers. The Firing Power was used as a post-processing technique to generate alarms before seizures. These methodologies were compared with a control approach based on the typical machine learning pipeline, considering a group of 37 patients with Temporal Lobe Epilepsy from the EPILEPSIAE database. The best-performing approach (Backwards-Landmark Window) achieved results of 0.75 ± 0.33 for sensitivity and 1.03 ± 1.00 for false positive rate per hour. This new strategy performed above chance for 89% of patients with the surrogate predictor, whereas the control approach only validated 46%.
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Affiliation(s)
- Edson David Pontes
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal.
| | - Mauro Pinto
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - César Teixeira
- Department of Informatics Engineering, CISUC, University of Coimbra, Coimbra, Portugal
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8
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Costa G, Teixeira C, Pinto MF. Comparison between epileptic seizure prediction and forecasting based on machine learning. Sci Rep 2024; 14:5653. [PMID: 38454117 PMCID: PMC10920642 DOI: 10.1038/s41598-024-56019-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 02/29/2024] [Indexed: 03/09/2024] Open
Abstract
Epilepsy affects around 1% of the population worldwide. Anti-epileptic drugs are an excellent option for controlling seizure occurrence but do not work for around one-third of patients. Warning devices employing seizure prediction or forecasting algorithms could bring patients new-found comfort and quality of life. These algorithms would attempt to detect a seizure's preictal period, a transitional moment between regular brain activity and the seizure, and relay this information to the user. Over the years, many seizure prediction studies using Electroencephalogram-based methodologies have been developed, triggering an alarm when detecting the preictal period. Recent studies have suggested a shift in view from prediction to forecasting. Seizure forecasting takes a probabilistic approach to the problem in question instead of the crisp approach of seizure prediction. In this field of study, the triggered alarm to symbolize the detection of a preictal period is substituted by a constant risk assessment analysis. The present work aims to explore methodologies capable of seizure forecasting and establish a comparison with seizure prediction results. Using 40 patients from the EPILEPSIAE database, we developed several patient-specific prediction and forecasting algorithms with different classifiers (a Logistic Regression, a 15 Support Vector Machines ensemble, and a 15 Shallow Neural Networks ensemble). Results show an increase of the seizure sensitivity in forecasting relative to prediction of up to 146% and in the number of patients that displayed an improvement over chance of up to 300%. These results suggest that a seizure forecasting methodology may be more suitable for seizure warning devices than a seizure prediction one.
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Affiliation(s)
- Gonçalo Costa
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal.
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, 3030-290, Coimbra, Portugal
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Ingolfsson TM, Benatti S, Wang X, Bernini A, Ducouret P, Ryvlin P, Beniczky S, Benini L, Cossettini A. Minimizing artifact-induced false-alarms for seizure detection in wearable EEG devices with gradient-boosted tree classifiers. Sci Rep 2024; 14:2980. [PMID: 38316856 PMCID: PMC10844293 DOI: 10.1038/s41598-024-52551-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 01/19/2024] [Indexed: 02/07/2024] Open
Abstract
Electroencephalography (EEG) is widely used to monitor epileptic seizures, and standard clinical practice consists of monitoring patients in dedicated epilepsy monitoring units via video surveillance and cumbersome EEG caps. Such a setting is not compatible with long-term tracking under typical living conditions, thereby motivating the development of unobtrusive wearable solutions. However, wearable EEG devices present the challenges of fewer channels, restricted computational capabilities, and lower signal-to-noise ratio. Moreover, artifacts presenting morphological similarities to seizures act as major noise sources and can be misinterpreted as seizures. This paper presents a combined seizure and artifacts detection framework targeting wearable EEG devices based on Gradient Boosted Trees. The seizure detector achieves nearly zero false alarms with average sensitivity values of [Formula: see text] for 182 seizures from the CHB-MIT dataset and [Formula: see text] for 25 seizures from the private dataset with no preliminary artifact detection or removal. The artifact detector achieves a state-of-the-art accuracy of [Formula: see text] (on the TUH-EEG Artifact Corpus dataset). Integrating artifact and seizure detection significantly reduces false alarms-up to [Formula: see text] compared to standalone seizure detection. Optimized for a Parallel Ultra-Low Power platform, these algorithms enable extended monitoring with a battery lifespan reaching 300 h. These findings highlight the benefits of integrating artifact detection in wearable epilepsy monitoring devices to limit the number of false positives.
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Affiliation(s)
| | - Simone Benatti
- University of Bologna, 40126, Bologna, Italy
- University of Modena and Reggio Emilia, 41121, Reggio Emilia, Italy
| | | | - Adriano Bernini
- University Hospital of Lausanne (CHUV), 1011, Lausanne, Switzerland
| | - Pauline Ducouret
- University Hospital of Lausanne (CHUV), 1011, Lausanne, Switzerland
| | - Philippe Ryvlin
- University Hospital of Lausanne (CHUV), 1011, Lausanne, Switzerland
| | - Sandor Beniczky
- Aarhus University Hospital, 8200, Aarhus, Denmark
- Danish Epilepsy Centre (Filadelfia), 4293, Dianalund, Denmark
| | - Luca Benini
- ETH Zürich, D-ITET, 8092, Zürich, Switzerland
- University of Bologna, 40126, Bologna, Italy
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10
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Jemal I, Abou-Abbas L, Henni K, Mitiche A, Mezghani N. Domain adaptation for EEG-based, cross-subject epileptic seizure prediction. Front Neuroinform 2024; 18:1303380. [PMID: 38371495 PMCID: PMC10869477 DOI: 10.3389/fninf.2024.1303380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 01/09/2024] [Indexed: 02/20/2024] Open
Abstract
The ability to predict the occurrence of an epileptic seizure is a safeguard against patient injury and health complications. However, a major challenge in seizure prediction arises from the significant variability observed in patient data. Common patient-specific approaches, which apply to each patient independently, often perform poorly for other patients due to the data variability. The aim of this study is to propose deep learning models which can handle this variability and generalize across various patients. This study addresses this challenge by introducing a novel cross-subject and multi-subject prediction models. Multiple-subject modeling broadens the scope of patient-specific modeling to account for the data from a dedicated ensemble of patients, thereby providing some useful, though relatively modest, level of generalization. The basic neural network architecture of this model is then adapted to cross-subject prediction, thereby providing a broader, more realistic, context of application. For accrued performance, and generalization ability, cross-subject modeling is enhanced by domain adaptation. Experimental evaluation using the publicly available CHB-MIT and SIENA data datasets shows that our multiple-subject model achieved better performance compared to existing works. However, the cross-subject faces challenges when applied to different patients. Finally, through investigating three domain adaptation methods, the model accuracy has been notably improved by 10.30% and 7.4% for the CHB-MIT and SIENA datasets, respectively.
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Affiliation(s)
- Imene Jemal
- Centre EMT, Institut National de la Recherche Scientifique, Montréal, QC, Canada
- Institute of Applied Artificial Intelligence (I2A), Université TÉLUQ, Montréal, QC, Canada
- Laboratoire de Recherche en Imagerie et Orthopédie, Centre de recherche du CHUM, Montréal, QC, Canada
| | - Lina Abou-Abbas
- Institute of Applied Artificial Intelligence (I2A), Université TÉLUQ, Montréal, QC, Canada
- Laboratoire de Recherche en Imagerie et Orthopédie, Centre de recherche du CHUM, Montréal, QC, Canada
| | - Khadidja Henni
- Institute of Applied Artificial Intelligence (I2A), Université TÉLUQ, Montréal, QC, Canada
- Laboratoire de Recherche en Imagerie et Orthopédie, Centre de recherche du CHUM, Montréal, QC, Canada
| | - Amar Mitiche
- Centre EMT, Institut National de la Recherche Scientifique, Montréal, QC, Canada
| | - Neila Mezghani
- Institute of Applied Artificial Intelligence (I2A), Université TÉLUQ, Montréal, QC, Canada
- Laboratoire de Recherche en Imagerie et Orthopédie, Centre de recherche du CHUM, Montréal, QC, Canada
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11
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Kantipudi MVVP, Kumar NSP, Aluvalu R, Selvarajan S, Kotecha K. An improved GBSO-TAENN-based EEG signal classification model for epileptic seizure detection. Sci Rep 2024; 14:843. [PMID: 38191643 PMCID: PMC10774431 DOI: 10.1038/s41598-024-51337-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 01/03/2024] [Indexed: 01/10/2024] Open
Abstract
Detection and classification of epileptic seizures from the EEG signals have gained significant attention in recent decades. Among other signals, EEG signals are extensively used by medical experts for diagnosing purposes. So, most of the existing research works developed automated mechanisms for designing an EEG-based epileptic seizure detection system. Machine learning techniques are highly used for reduced time consumption, high accuracy, and optimal performance. Still, it limits by the issues of high complexity in algorithm design, increased error value, and reduced detection efficacy. Thus, the proposed work intends to develop an automated epileptic seizure detection system with an improved performance rate. Here, the Finite Linear Haar wavelet-based Filtering (FLHF) technique is used to filter the input signals and the relevant set of features are extracted from the normalized output with the help of Fractal Dimension (FD) analysis. Then, the Grasshopper Bio-Inspired Swarm Optimization (GBSO) technique is employed to select the optimal features by computing the best fitness value and the Temporal Activation Expansive Neural Network (TAENN) mechanism is used for classifying the EEG signals to determine whether normal or seizure affected. Numerous intelligence algorithms, such as preprocessing, optimization, and classification, are used in the literature to identify epileptic seizures based on EEG signals. The primary issues facing the majority of optimization approaches are reduced convergence rates and higher computational complexity. Furthermore, the problems with machine learning approaches include a significant method complexity, intricate mathematical calculations, and a decreased training speed. Therefore, the goal of the proposed work is to put into practice efficient algorithms for the recognition and categorization of epileptic seizures based on EEG signals. The combined effect of the proposed FLHF, FD, GBSO, and TAENN models might dramatically improve disease detection accuracy while decreasing complexity of system along with time consumption as compared to the prior techniques. By using the proposed methodology, the overall average epileptic seizure detection performance is increased to 99.6% with f-measure of 99% and G-mean of 98.9% values.
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Affiliation(s)
- M V V Prasad Kantipudi
- Symbiosis Institute of Technology, Symbiosis International (Deemed) University, Pune, 412115, India
| | - N S Pradeep Kumar
- S.E.A College of Engineering and Technology, Bengaluru, 560049, India
| | - Rajanikanth Aluvalu
- Department of Information Technology, Chaitanya Bharathi Institute of Technology, Hyderabad, 500075, India
| | - Shitharth Selvarajan
- School of Built Environment, Engineering and Computing, Leeds Beckett University, Leeds, LS1 3HE, UK.
- Department of Computer Science, Kebri Dehar University, Somali, Ethiopia.
| | - K Kotecha
- Symbiosis Institute of Technology, Symbiosis International (Deemed) University, Pune, 412115, India
- Symbiosis Centre for Applied Artificial Intelligence (SCAAI), Symbiosis International (Deemed) University, Pune, 412115, India
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12
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Batista J, Pinto MF, Tavares M, Lopes F, Oliveira A, Teixeira C. EEG epilepsy seizure prediction: the post-processing stage as a chronology. Sci Rep 2024; 14:407. [PMID: 38172583 PMCID: PMC10764904 DOI: 10.1038/s41598-023-50609-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 12/21/2023] [Indexed: 01/05/2024] Open
Abstract
Almost one-third of epileptic patients fail to achieve seizure control through anti-epileptic drug administration. In the scarcity of completely controlling a patient's epilepsy, seizure prediction plays a significant role in clinical management and providing new therapeutic options such as warning or intervention devices. Seizure prediction algorithms aim to identify the preictal period that Electroencephalogram (EEG) signals can capture. However, this period is associated with substantial heterogeneity, varying among patients or even between seizures from the same patient. The present work proposes a patient-specific seizure prediction algorithm using post-processing techniques to explore the existence of a set of chronological events of brain activity that precedes epileptic seizures. The study was conducted with 37 patients with Temporal Lobe Epilepsy (TLE) from the EPILEPSIAE database. The designed methodology combines univariate linear features with a classifier based on Support Vector Machines (SVM) and two post-processing techniques to handle pre-seizure temporality in an easily explainable way, employing knowledge from network theory. In the Chronological Firing Power approach, we considered the preictal as a sequence of three brain activity events separated in time. In the Cumulative Firing Power approach, we assumed the preictal period as a sequence of three overlapping events. These methodologies were compared with a control approach based on the typical machine learning pipeline. We considered a Seizure Prediction horizon (SPH) of 5 mins and analyzed several values for the Seizure Occurrence Period (SOP) duration, between 10 and 55 mins. Our results showed that the Cumulative Firing Power approach may improve the seizure prediction performance. This new strategy performed above chance for 62% of patients, whereas the control approach only validated 49% of its models.
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Affiliation(s)
- Joana Batista
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal.
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Mariana Tavares
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg , Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Ana Oliveira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
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13
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Eskofier BM, Klucken J. Predictive Models for Health Deterioration: Understanding Disease Pathways for Personalized Medicine. Annu Rev Biomed Eng 2023; 25:131-156. [PMID: 36854259 DOI: 10.1146/annurev-bioeng-110220-030247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
Abstract
Artificial intelligence (AI) and machine learning (ML) methods are currently widely employed in medicine and healthcare. A PubMed search returns more than 100,000 articles on these topics published between 2018 and 2022 alone. Notwithstanding several recent reviews in various subfields of AI and ML in medicine, we have yet to see a comprehensive review around the methods' use in longitudinal analysis and prediction of an individual patient's health status within a personalized disease pathway. This review seeks to fill that gap. After an overview of the AI and ML methods employed in this field and of specific medical applications of models of this type, the review discusses the strengths and limitations of current studies and looks ahead to future strands of research in this field. We aim to enable interested readers to gain a detailed impression of the research currently available and accordingly plan future work around predictive models for deterioration in health status.
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Affiliation(s)
- Bjoern M Eskofier
- Machine Learning and Data Analytics Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany;
| | - Jochen Klucken
- Digital Medicine Group, Luxembourg Centre for Systems Biomedicine, Université du Luxembourg, Belvaux, Luxembourg
- Digital Medicine Group, Department of Precision Health, Luxembourg Institute of Health, Strassen, Luxembourg
- Centre Hospitalier de Luxembourg, Luxembourg City, Luxembourg
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14
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Lopes F, Leal A, Pinto MF, Dourado A, Schulze-Bonhage A, Dümpelmann M, Teixeira C. Removing artefacts and periodically retraining improve performance of neural network-based seizure prediction models. Sci Rep 2023; 13:5918. [PMID: 37041158 PMCID: PMC10090199 DOI: 10.1038/s41598-023-30864-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 03/02/2023] [Indexed: 04/13/2023] Open
Abstract
The development of seizure prediction models is often based on long-term scalp electroencephalograms (EEGs) since they capture brain electrical activity, are non-invasive, and come at a relatively low-cost. However, they suffer from major shortcomings. First, long-term EEG is usually highly contaminated with artefacts. Second, changes in the EEG signal over long intervals, known as concept drift, are often neglected. We evaluate the influence of these problems on deep neural networks using EEG time series and on shallow neural networks using widely-used EEG features. Our patient-specific prediction models were tested in 1577 hours of continuous EEG, containing 91 seizures from 41 patients with temporal lobe epilepsy who were undergoing pre-surgical monitoring. Our results showed that cleaning EEG data, using a previously developed artefact removal method based on deep convolutional neural networks, improved prediction performance. We also found that retraining the models over time reduced false predictions. Furthermore, the results show that although deep neural networks processing EEG time series are less susceptible to false alarms, they may need more data to surpass feature-based methods. These findings highlight the importance of robust data denoising and periodic adaptation of seizure prediction models.
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Affiliation(s)
- Fábio Lopes
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal.
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
| | - Adriana Leal
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Mauro F Pinto
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - António Dourado
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
| | - Andreas Schulze-Bonhage
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Matthias Dümpelmann
- Epilepsy Center, Department Neurosurgery, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - César Teixeira
- Center for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal
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15
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West J, Dasht Bozorgi Z, Herron J, Chizeck HJ, Chambers JD, Li L. Machine learning seizure prediction: one problematic but accepted practice. J Neural Eng 2023; 20. [PMID: 36548993 DOI: 10.1088/1741-2552/acae09] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 12/22/2022] [Indexed: 12/24/2022]
Abstract
Objective.Epilepsy is one of the most common neurological disorders and can have a devastating effect on a person's quality of life. As such, the search for markers which indicate an upcoming seizure is a critically important area of research which would allow either on-demand treatment or early warning for people suffering with these disorders. There is a growing body of work which uses machine learning methods to detect pre-seizure biomarkers from electroencephalography (EEG), however the high prediction rates published do not translate into the clinical setting. Our objective is to investigate a potential reason for this.Approach.We conduct an empirical study of a commonly used data labelling method for EEG seizure prediction which relies on labelling small windows of EEG data in temporal groups then selecting randomly from those windows to validate results. We investigate a confound for this approach for seizure prediction and demonstrate the ease at which it can be inadvertently learned by a machine learning system.Main results.We find that non-seizure signals can create decision surfaces for machine learning approaches which can result in false high prediction accuracy on validation datasets. We prove this by training an artificial neural network to learn fake seizures (fully decoupled from biology) in real EEG.Significance.The significance of our findings is that many existing works may be reporting results based on this confound and that future work should adhere to stricter requirements in mitigating this confound. The problematic, but commonly accepted approach in the literature for seizure prediction labelling is potentially preventing real advances in developing solutions for these sufferers. By adhering to the guidelines in this paper future work in machine learning seizure prediction is more likely to be clinically relevant.
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Affiliation(s)
- Joseph West
- School of Computing and Information Systems, University of Melbourne, Melbourne, Victoria, Australia.,Department of Biomedical Engineering, University of Melbourne, Melbourne, Victoria, Australia
| | - Zahra Dasht Bozorgi
- School of Computing and Information Systems, University of Melbourne, Melbourne, Victoria, Australia
| | - Jeffrey Herron
- Department of Neurological Surgery, University of Washington, Seattle, Washington, United States of America
| | - Howard J Chizeck
- Department of Electrical and Computer Engineering, University of Washington, Seattle, Washington, United States of America
| | - Jordan D Chambers
- Department of Biomedical Engineering, University of Melbourne, Melbourne, Victoria, Australia
| | - Lyra Li
- Department of Biomedical Engineering, University of Melbourne, Melbourne, Victoria, Australia
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16
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Unsupervised EEG preictal interval identification in patients with drug-resistant epilepsy. Sci Rep 2023; 13:784. [PMID: 36646727 PMCID: PMC9842648 DOI: 10.1038/s41598-022-23902-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 11/07/2022] [Indexed: 01/18/2023] Open
Abstract
Typical seizure prediction models aim at discriminating interictal brain activity from pre-seizure electrographic patterns. Given the lack of a preictal clinical definition, a fixed interval is widely used to develop these models. Recent studies reporting preictal interval selection among a range of fixed intervals show inter- and intra-patient preictal interval variability, possibly reflecting the heterogeneity of the seizure generation process. Obtaining accurate labels of the preictal interval can be used to train supervised prediction models and, hence, avoid setting a fixed preictal interval for all seizures within the same patient. Unsupervised learning methods hold great promise for exploring preictal alterations on a seizure-specific scale. Multivariate and univariate linear and nonlinear features were extracted from scalp electroencephalography (EEG) signals collected from 41 patients with drug-resistant epilepsy undergoing presurgical monitoring. Nonlinear dimensionality reduction was performed for each group of features and each of the 226 seizures. We applied different clustering methods in searching for preictal clusters located until 2 h before the seizure onset. We identified preictal patterns in 90% of patients and 51% of the visually inspected seizures. The preictal clusters manifested a seizure-specific profile with varying duration (22.9 ± 21.0 min) and starting time before seizure onset (47.6 ± 27.3 min). Searching for preictal patterns on the EEG trace using unsupervised methods showed that it is possible to identify seizure-specific preictal signatures for some patients and some seizures within the same patient.
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17
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Ren Z, Han X, Wang B. The performance evaluation of the state-of-the-art EEG-based seizure prediction models. Front Neurol 2022; 13:1016224. [PMID: 36504642 PMCID: PMC9732735 DOI: 10.3389/fneur.2022.1016224] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 11/09/2022] [Indexed: 11/26/2022] Open
Abstract
The recurrent and unpredictable nature of seizures can lead to unintentional injuries and even death. The rapid development of electroencephalogram (EEG) and Artificial Intelligence (AI) technologies has made it possible to predict seizures in real-time through brain-machine interfaces (BCI), allowing advanced intervention. To date, there is still much room for improvement in predictive seizure models constructed by EEG using machine learning (ML) and deep learning (DL). But, the most critical issue is how to improve the performance and generalization of the model, which involves some confusing conceptual and methodological issues. This review focuses on analyzing several factors affecting the performance of seizure prediction models, focusing on the aspects of post-processing, seizure occurrence period (SOP), seizure prediction horizon (SPH), and algorithms. Furthermore, this study presents some new directions and suggestions for building high-performance prediction models in the future. We aimed to clarify the concept for future research in related fields and improve the performance of prediction models to provide a theoretical basis for future applications of wearable seizure detection devices.
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Affiliation(s)
- Zhe Ren
- Department of Neurology, Zhengzhou University People's Hospital, Zhengzhou, China,Department of Neurology, Henan Provincial People's Hospital, Zhengzhou, China
| | - Xiong Han
- Department of Neurology, Zhengzhou University People's Hospital, Zhengzhou, China,Department of Neurology, Henan Provincial People's Hospital, Zhengzhou, China,*Correspondence: Xiong Han
| | - Bin Wang
- Department of Neurology, Zhengzhou University People's Hospital, Zhengzhou, China,Department of Neurology, Henan Provincial People's Hospital, Zhengzhou, China
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18
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Hatherley J, Sparrow R. Diachronic and synchronic variation in the performance of adaptive machine learning systems: the ethical challenges. J Am Med Inform Assoc 2022; 30:361-366. [PMID: 36377970 PMCID: PMC9846684 DOI: 10.1093/jamia/ocac218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 09/19/2022] [Accepted: 11/01/2022] [Indexed: 11/16/2022] Open
Abstract
OBJECTIVES Machine learning (ML) has the potential to facilitate "continual learning" in medicine, in which an ML system continues to evolve in response to exposure to new data over time, even after being deployed in a clinical setting. In this article, we provide a tutorial on the range of ethical issues raised by the use of such "adaptive" ML systems in medicine that have, thus far, been neglected in the literature. TARGET AUDIENCE The target audiences for this tutorial are the developers of ML AI systems, healthcare regulators, the broader medical informatics community, and practicing clinicians. SCOPE Discussions of adaptive ML systems to date have overlooked the distinction between 2 sorts of variance that such systems may exhibit-diachronic evolution (change over time) and synchronic variation (difference between cotemporaneous instantiations of the algorithm at different sites)-and underestimated the significance of the latter. We highlight the challenges that diachronic evolution and synchronic variation present for the quality of patient care, informed consent, and equity, and discuss the complex ethical trade-offs involved in the design of such systems.
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Affiliation(s)
- Joshua Hatherley
- Corresponding Author: Joshua Hatherley, MBioethics, Philosophy Department, School of Philosophical, Historical and International Studies, Monash University, Level 6, 20 Chancellor's Walk (Menzies Building), Wellington Road, Clayton, VIC 3800, Australia;
| | - Robert Sparrow
- Philosophy Department, School of Philosophical, Historical and International Studies, Monash University, Clayton, Victoria 3800, Australia
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19
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Farhani G, Zhou Y, Jenkins ME, Naish MD, Trejos AL. Using Deep Learning for Task and Tremor Type Classification in People with Parkinson's Disease. SENSORS (BASEL, SWITZERLAND) 2022; 22:7322. [PMID: 36236422 PMCID: PMC9570986 DOI: 10.3390/s22197322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/23/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Hand tremor is one of the dominating symptoms of Parkinson's disease (PD), which significantly limits activities of daily living. Along with medications, wearable devices have been proposed to suppress tremor. However, suppressing tremor without interfering with voluntary motion remains challenging and improvements are needed. The main goal of this work was to design algorithms for the automatic identification of the tremor type and voluntary motions, using only surface electromyography (sEMG) data. Towards this goal, a bidirectional long short-term memory (BiLSTM) algorithm was implemented that uses sEMG data to identify the motion and tremor type of people living with PD when performing a task. Moreover, in order to automate the training process, hyperparamter selection was performed using a regularized evolutionary algorithm. The results show that the accuracy of task classification among 15 people living with PD was 84±8%, and the accuracy of tremor classification was 88±5%. Both models performed significantly above chance levels (20% and 33% for task and tremor classification, respectively). Thus, it was concluded that the trained models, based on using purely sEMG signals, could successfully identify the task and tremor types.
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Affiliation(s)
- Ghazal Farhani
- Department of Electrical and Computer Engineering, Western University, London, ON N6A 5B9, Canada
| | - Yue Zhou
- School of Biomedical Engineering, Western University, London, ON N6A 5B9, Canada
| | - Mary E. Jenkins
- Movement Disorders Program, Clinical Neurological Sciences, Western University, London, ON N6A 3K7, Canada
| | - Michael D. Naish
- Department of Electrical and Computer Engineering, Western University, London, ON N6A 5B9, Canada
- School of Biomedical Engineering, Western University, London, ON N6A 5B9, Canada
- Department of Mechanical and Materials Engineering, Western University, London, ON N6A 5B9, Canada
| | - Ana Luisa Trejos
- Department of Electrical and Computer Engineering, Western University, London, ON N6A 5B9, Canada
- School of Biomedical Engineering, Western University, London, ON N6A 5B9, Canada
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20
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Xu M, Jie J, Zhou W, Zhou H, Jin S. Synthetic Epileptic Brain Activities with TripleGAN. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:2841228. [PMID: 36065378 PMCID: PMC9440850 DOI: 10.1155/2022/2841228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 07/10/2022] [Accepted: 08/12/2022] [Indexed: 11/18/2022]
Abstract
Epilepsy is a chronic noninfectious disease caused by sudden abnormal discharge of brain neurons, which leads to intermittent brain dysfunction. It is also one of the most common neurological diseases in the world. The automatic detection of epilepsy based on electroencephalogram through machine learning, correlation analysis, and temporal-frequency analysis plays an important role in epilepsy early warning and automatic recognition. In this study, we propose a method to realize EEG epilepsy recognition by means of triple genetic antagonism network (GAN). TripleGAN is used for EEG temporal domain, frequency domain, and temporal-frequency domain, respectively. The experiment was conducted through CHB-MIT datasets, which operated at the latest level in the same industry in the world. In the CHB-MIT dataset, the classification accuracy, sensitivity, and specificity exceeded 1.19%, 1.36%, and 0.27%, respectively. The crossobject ratio exceeded 0.53%, 2.2%, and 0.37%, respectively. It shows that the established deep learning model of TripleGAN has a good effect on EEG epilepsy classification through simulation and classification optimization of real signals.
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Affiliation(s)
- Meiyan Xu
- Minnan Normal University, China
- OYMotion Technologies Co., Ltd., China
| | | | | | | | - Shunshan Jin
- Beidahuang Industry Group General Hospital, China
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21
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Li C, Lammie C, Dong X, Amirsoleimani A, Azghadi MR, Genov R. Seizure Detection and Prediction by Parallel Memristive Convolutional Neural Networks. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2022; 16:609-625. [PMID: 35737626 DOI: 10.1109/tbcas.2022.3185584] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
During the past two decades, epileptic seizure detection and prediction algorithms have evolved rapidly. However, despite significant performance improvements, their hardware implementation using conventional technologies, such as Complementary Metal-Oxide-Semiconductor (CMOS), in power and area-constrained settings remains a challenging task; especially when many recording channels are used. In this paper, we propose a novel low-latency parallel Convolutional Neural Network (CNN) architecture that has between 2-2,800x fewer network parameters compared to State-Of-The-Art (SOTA) CNN architectures and achieves 5-fold cross validation accuracy of 99.84% for epileptic seizure detection, and 99.01% and 97.54% for epileptic seizure prediction, when evaluated using the University of Bonn Electroencephalogram (EEG), CHB-MIT and SWEC-ETHZ seizure datasets, respectively. We subsequently implement our network onto analog crossbar arrays comprising Resistive Random-Access Memory (RRAM) devices, and provide a comprehensive benchmark by simulating, laying out, and determining hardware requirements of the CNN component of our system. We parallelize the execution of convolution layer kernels on separate analog crossbars to enable 2 orders of magnitude reduction in latency compared to SOTA hybrid Memristive-CMOS Deep Learning (DL) accelerators. Furthermore, we investigate the effects of non-idealities on our system and investigate Quantization Aware Training (QAT) to mitigate the performance degradation due to low Analog-to-Digital Converter (ADC)/Digital-to-Analog Converter (DAC) resolution. Finally, we propose a stuck weight offsetting methodology to mitigate performance degradation due to stuck [Formula: see text] memristor weights, recovering up to 32% accuracy, without requiring retraining. The CNN component of our platform is estimated to consume approximately 2.791 W of power while occupying an area of 31.255 mm2 in a 22 nm FDSOI CMOS process.
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22
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Yang Y, Truong ND, Eshraghian JK, Nikpour A, Kavehei O. Weak self-supervised learning for seizure forecasting: a feasibility study. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220374. [PMID: 35950196 PMCID: PMC9346358 DOI: 10.1098/rsos.220374] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 07/12/2022] [Indexed: 05/27/2023]
Abstract
This paper proposes an artificial intelligence system that continuously improves over time at event prediction using initially unlabelled data by using self-supervised learning. Time-series data are inherently autocorrelated. By using a detection model to generate weak labels on the fly, which are concurrently used as targets to train a prediction model on a time-shifted input data stream, this autocorrelation can effectively be harnessed to reduce the burden of manual labelling. This is critical in medical patient monitoring, as it enables the development of personalized forecasting models without demanding the annotation of long sequences of physiological signal recordings. We perform a feasibility study on seizure prediction, which is identified as an ideal test case, as pre-ictal brainwaves are patient-specific, and tailoring models to individual patients is known to improve forecasting performance significantly. Our self-supervised approach is used to train individualized forecasting models for 10 patients, showing an average relative improvement in sensitivity by 14.30% and a reduction in false alarms by 19.61% in early seizure forecasting. This proof-of-concept on the feasibility of using a continuous stream of time-series neurophysiological data paves the way towards a low-power neuromorphic neuromodulation system.
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Affiliation(s)
- Yikai Yang
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
| | - Nhan Duy Truong
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
- The University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
| | - Jason K. Eshraghian
- Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
| | - Armin Nikpour
- Faculty of Medicine and Health, Central Clinical School, The University of Sydney, Sydney, New South Wales 2006, Australia
- Comprehensive Epilepsy Service and Department of Neurology, Royal Prince Alfred Hospital, Camperdown, New South Wales 2050, Australia
| | - Omid Kavehei
- School of Biomedical Engineering, and the Australian Research Council Training Centre for Innovative BioEngineering, Faculty of EngineeringThe University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
- The University of Sydney Nano Institute, Sydney, New South Wales 2006, Australia
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23
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Wang Y, Yang Y, Cao G, Guo J, Wei P, Feng T, Dai Y, Huang J, Kang G, Zhao G. SEEG-Net: An explainable and deep learning-based cross-subject pathological activity detection method for drug-resistant epilepsy. Comput Biol Med 2022; 148:105703. [PMID: 35791972 DOI: 10.1016/j.compbiomed.2022.105703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 05/16/2022] [Accepted: 06/04/2022] [Indexed: 11/30/2022]
Abstract
OBJECTIVE Precise preoperative evaluation of drug-resistant epilepsy (DRE) requires accurate analysis of invasive stereoelectroencephalography (SEEG). With the tremendous breakthrough of Artificial intelligence (AI), previous studies can help clinical experts to identify pathological activities automatically. However, they still face limitations when applied in real-world clinical DRE scenarios, such as sample imbalance, cross-subject domain shift, and poor interpretability. Our objective is to propose a model that can address the above problems and realizes high-sensitivity SEEG pathological activity detection based on two real clinical datasets. METHODS Our proposed innovative and effective SEEG-Net introduces a multiscale convolutional neural network (MSCNN) to increase the receptive field of the model, and to learn SEEG multiple frequency domain features, local and global features. Moreover, we designed a novel focal domain generalization loss (FDG-loss) function to enhance the target sample weight and to learn domain consistency features. Furthermore, to enhance the interpretability and flexibility of SEEG-Net, we explain SEEG-Net from multiple perspectives, such as significantly different features, interpretable models, and model learning process interpretation by Grad-CAM++. RESULTS The performance of our proposed method is verified on a public benchmark multicenter SEEG dataset and a private clinical SEEG dataset for a robust comparison. The experimental results demonstrate that the SEEG-Net model achieves the highest sensitivity and is state-of-the-art on cross-subject (for different patients) evaluation, and well deal with the known problems. Besides, we provide an SEEG processing and database construction flow, by maintaining consistency with the real-world clinical scenarios. SIGNIFICANCE According to the results, SEEG-Net is constructed to increase the sensitivity of SEEG pathological activity detection. Simultaneously, we settled certain problems about AI assistance in clinical DRE, built a bridge between AI algorithm application and clinical practice.
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Affiliation(s)
- Yiping Wang
- Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications, No. 10 Xitucheng Road, Haidian District, Beijing, 100876, China
| | - Yanfeng Yang
- Department of Neurosurgery, Xuan Wu Hospital, Capital Medical University, No. 45 Changchun Street, Xicheng District, Beijing, 100053, China
| | - Gongpeng Cao
- Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications, No. 10 Xitucheng Road, Haidian District, Beijing, 100876, China
| | - Jinjie Guo
- Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications, No. 10 Xitucheng Road, Haidian District, Beijing, 100876, China
| | - Penghu Wei
- Department of Neurosurgery, Xuan Wu Hospital, Capital Medical University, No. 45 Changchun Street, Xicheng District, Beijing, 100053, China
| | - Tao Feng
- Department of Neurosurgery, Xuan Wu Hospital, Capital Medical University, No. 45 Changchun Street, Xicheng District, Beijing, 100053, China
| | - Yang Dai
- Department of Neurosurgery, Xuan Wu Hospital, Capital Medical University, No. 45 Changchun Street, Xicheng District, Beijing, 100053, China
| | - Jinguo Huang
- Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications, No. 10 Xitucheng Road, Haidian District, Beijing, 100876, China
| | - Guixia Kang
- Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications, No. 10 Xitucheng Road, Haidian District, Beijing, 100876, China.
| | - Guoguang Zhao
- Department of Neurosurgery, Xuan Wu Hospital, Capital Medical University, No. 45 Changchun Street, Xicheng District, Beijing, 100053, China.
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24
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Ong JS, Wong SN, Arulsamy A, Watterson JL, Shaikh MF. Medical Technology: A Systematic Review on Medical Devices Utilized for Epilepsy Prediction and Management. Curr Neuropharmacol 2022; 20:950-964. [PMID: 34749622 PMCID: PMC9881104 DOI: 10.2174/1570159x19666211108153001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 10/30/2021] [Accepted: 11/03/2021] [Indexed: 11/22/2022] Open
Abstract
BACKGROUND Epilepsy is a devastating neurological disorder that affects nearly 70 million people worldwide. Epilepsy causes uncontrollable, unprovoked and unpredictable seizures that reduce the quality of life of those afflicted, with 1-9 epileptic patient deaths per 1000 patients occurring annually due to sudden unexpected death in epilepsy (SUDEP). Predicting the onset of seizures and managing them may help patients from harming themselves and may improve their well-being. For a long time, electroencephalography (EEG) devices have been the mainstay for seizure detection and monitoring. This systematic review aimed to elucidate and critically evaluate the latest advancements in medical devices, besides EEG, that have been proposed for the management and prediction of epileptic seizures. A literature search was performed on three databases, PubMed, Scopus and EMBASE. METHODS Following title/abstract screening by two independent reviewers, 27 articles were selected for critical analysis in this review. RESULTS These articles revealed ambulatory, non-invasive and wearable medical devices, such as the in-ear EEG devices; the accelerometer-based devices and the subcutaneous implanted EEG devices might be more acceptable than traditional EEG systems. In addition, extracerebral signalbased devices may be more efficient than EEG-based systems, especially when combined with an intervention trigger. Although further studies may still be required to improve and validate these proposed systems before commercialization, these findings may give hope to epileptic patients, particularly those with refractory epilepsy, to predict and manage their seizures. CONCLUSION The use of medical devices for epilepsy may improve patients' independence and quality of life and possibly prevent sudden unexpected death in epilepsy (SUDEP).
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Affiliation(s)
- Jen Sze Ong
- Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, Bandar Sunway, Selangor, Malaysia
| | - Shuet Nee Wong
- School of Medicine, Queen’s University Belfast, Belfast, United Kingdom
| | - Alina Arulsamy
- Neuropharmacology Research Laboratory, Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, Bandar Sunway, Selangor, Malaysia
| | - Jessica L. Watterson
- Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, Bandar Sunway, Selangor, Malaysia
| | - Mohd. Farooq Shaikh
- Neuropharmacology Research Laboratory, Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, Bandar Sunway, Selangor, Malaysia,Address correspondence to this author at the Neuropharmacology Research Laboratory, Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, Selangor, Malaysia; Tel/Fax: +60 3 5514 4483; E-mail:
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25
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Pinto M, Coelho T, Leal A, Lopes F, Dourado A, Martins P, Teixeira C. Interpretable EEG seizure prediction using a multiobjective evolutionary algorithm. Sci Rep 2022; 12:4420. [PMID: 35292691 PMCID: PMC8924190 DOI: 10.1038/s41598-022-08322-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/22/2022] [Indexed: 11/28/2022] Open
Abstract
Seizure prediction might be the solution to tackle the apparent unpredictability of seizures in patients with drug-resistant epilepsy, which comprise about a third of all patients with epilepsy. Designing seizure prediction models involves defining the pre-ictal period, a transition stage between inter-ictal brain activity and the seizure discharge. This period is typically a fixed interval, with some recent studies reporting the evaluation of different patient-specific pre-ictal intervals. Recently, researchers have aimed to determine the pre-ictal period, a transition stage between regular brain activity and a seizure. Authors have been using deep learning models given the ability of such models to automatically perform pre-processing, feature extraction, classification, and handling temporal and spatial dependencies. As these approaches create black-box models, clinicians may not have sufficient trust to use them in high-stake decisions. By considering these problems, we developed an evolutionary seizure prediction model that identifies the best set of features while automatically searching for the pre-ictal period and accounting for patient comfort. This methodology provides patient-specific interpretable insights, which might contribute to a better understanding of seizure generation processes and explain the algorithm's decisions. We tested our methodology on 238 seizures and 3687 h of continuous data, recorded on scalp recordings from 93 patients with several types of focal and generalised epilepsies. We compared the results with a seizure surrogate predictor and obtained a performance above chance for 32% patients. We also compared our results with a control method based on the standard machine learning pipeline (pre-processing, feature extraction, classifier training, and post-processing), where the control marginally outperformed our approach by validating 35% of the patients. In total, 54 patients performed above chance for at least one method: our methodology or the control one. Of these 54 patients, 21 ([Formula: see text]38%) were solely validated by our methodology, while 24 ([Formula: see text]44%) were only validated by the control method. These findings may evidence the need for different methodologies concerning different patients.
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Affiliation(s)
- Mauro Pinto
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal.
| | - Tiago Coelho
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Adriana Leal
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Fábio Lopes
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
- Epilepsy Center, Department Neurosurgery, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - António Dourado
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - Pedro Martins
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
| | - César Teixeira
- Department of Informatics Engineering, CISUC, Univ Coimbra, Coimbra, Portugal
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26
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Natu M, Bachute M, Gite S, Kotecha K, Vidyarthi A. Review on Epileptic Seizure Prediction: Machine Learning and Deep Learning Approaches. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:7751263. [PMID: 35096136 PMCID: PMC8794701 DOI: 10.1155/2022/7751263] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 12/28/2021] [Indexed: 12/12/2022]
Abstract
Epileptic seizures occur due to brain abnormalities that can indirectly affect patient's health. It occurs abruptly without any symptoms and thus increases the mortality rate of humans. Almost 1% of world's population suffers from epileptic seizures. Prediction of seizures before the beginning of onset is beneficial for preventing seizures by medication. Nowadays, modern computational tools, machine learning, and deep learning methods have been used to predict seizures using EEG. However, EEG signals may get corrupted with background noise, and artifacts such as eye blinks and physical movements of muscles may lead to "pops" in the signal, resulting in electrical interference, which is cumbersome to detect through visual inspection for longer duration recordings. These limitations in automatic detection of interictal spikes and epileptic seizures are preferred, which is an essential tool for examining and scrutinizing the EEG recording more precisely. These restrictions bring our attention to present a review of automated schemes that will help neurologists categorize epileptic and nonepileptic signals. While preparing this review paper, it is observed that feature selection and classification are the main challenges in epilepsy prediction algorithms. This paper presents various techniques depending on various features and classifiers over the last few years. The methods presented will give a detailed understanding and ideas about seizure prediction and future research directions.
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Affiliation(s)
- Milind Natu
- Department of Electronics and Telecommunication, Symbiosis Institute of Technology, Symbiosis International (Deemed University), SIU, Lavale, Pune, Maharashtra, India
| | - Mrinal Bachute
- Symbiosis Institute of Technology (SIT), Symbiosis International (Deemed University), SIU, Lavale, Pune, Maharashtra, India
| | - Shilpa Gite
- Computer Science and Information Technology Department, Symbiosis Institute of Technology, Symbiosis International (Deemed) University, Pune 412115, India
- Symbiosis Centre of Applied AI (SCAAI), Symbiosis International (Deemed) University, Pune 412115, India
| | - Ketan Kotecha
- Computer Science and Information Technology Department, Symbiosis Institute of Technology, Symbiosis International (Deemed) University, Pune 412115, India
- Symbiosis Centre of Applied AI (SCAAI), Symbiosis International (Deemed) University, Pune 412115, India
| | - Ankit Vidyarthi
- Department of CSE&IT, Jaypee Institute of Information Technology Noida, India
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27
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Cherian R, Kanaga EG. Theoretical and Methodological Analysis of EEG based Seizure Detection and Prediction: An Exhaustive Review. J Neurosci Methods 2022; 369:109483. [DOI: 10.1016/j.jneumeth.2022.109483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 01/13/2022] [Accepted: 01/13/2022] [Indexed: 02/07/2023]
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28
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Automated diagnosis of depression from EEG signals using traditional and deep learning approaches: A comparative analysis. Biocybern Biomed Eng 2022. [DOI: 10.1016/j.bbe.2021.12.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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29
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Wang Z, Yang J, Wu H, Zhu J, Sawan M. Power efficient refined seizure prediction algorithm based on an enhanced benchmarking. Sci Rep 2021; 11:23498. [PMID: 34873202 PMCID: PMC8648730 DOI: 10.1038/s41598-021-02798-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 11/22/2021] [Indexed: 11/18/2022] Open
Abstract
Deep learning techniques have led to significant advancements in seizure prediction research. However, corresponding used benchmarks are not uniform in published results. Moreover, inappropriate training and evaluation processes used in various work create overfitted models, making prediction performance fluctuate or unreliable. In this study, we analyzed the various data preparation methods, dataset partition methods in related works, and explained the corresponding impacts to the prediction algorithms. Then we applied a robust processing procedure that considers the appropriate sampling parameters and the leave-one-out cross-validation method to avoid possible overfitting and provide prerequisites for ease benchmarking. Moreover, a deep learning architecture takes advantage of a one-dimension convolutional neural network and a bi-directional long short-term memory network is proposed for seizure prediction. The architecture achieves 77.6% accuracy, 82.7% sensitivity, and 72.4% specificity, and it outperforms the indicators of other prior-art works. The proposed model is also hardware friendly; it has 6.274 k parameters and requires only 12.825 M floating-point operations, which is advantageous for memory and power constrained device implementations.
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Affiliation(s)
- Ziyu Wang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China
| | - Jie Yang
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
| | - Hemmings Wu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Junming Zhu
- Department of Neurosurgery, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Mohamad Sawan
- Cutting-Edge Net of Biomedical Research and INnovation (CenBRAIN), School of Engineering, Westlake University, Hangzhou, Zhejiang, China.
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30
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Ambulatory seizure forecasting with a wrist-worn device using long-short term memory deep learning. Sci Rep 2021; 11:21935. [PMID: 34754043 PMCID: PMC8578354 DOI: 10.1038/s41598-021-01449-2] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 10/22/2021] [Indexed: 11/30/2022] Open
Abstract
The ability to forecast seizures minutes to hours in advance of an event has been verified using invasive EEG devices, but has not been previously demonstrated using noninvasive wearable devices over long durations in an ambulatory setting. In this study we developed a seizure forecasting system with a long short-term memory (LSTM) recurrent neural network (RNN) algorithm, using a noninvasive wrist-worn research-grade physiological sensor device, and tested the system in patients with epilepsy in the field, with concurrent invasive EEG confirmation of seizures via an implanted recording device. The system achieved forecasting performance significantly better than a random predictor for 5 of 6 patients studied, with mean AUC-ROC of 0.80 (range 0.72–0.92). These results provide the first clear evidence that direct seizure forecasts are possible using wearable devices in the ambulatory setting for many patients with epilepsy.
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31
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Bosl WJ, Leviton A, Loddenkemper T. Prediction of Seizure Recurrence. A Note of Caution. Front Neurol 2021; 12:675728. [PMID: 34054713 PMCID: PMC8155381 DOI: 10.3389/fneur.2021.675728] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 04/20/2021] [Indexed: 12/31/2022] Open
Abstract
Great strides have been made recently in documenting that machine-learning programs can predict seizure occurrence in people who have epilepsy. Along with this progress have come claims that appear to us to be a bit premature. We anticipate that many people will benefit from seizure prediction. We also doubt that all will benefit. Although machine learning is a useful tool for aiding discovery, we believe that the greatest progress will come from deeper understanding of seizures, epilepsy, and the EEG features that enable seizure prediction. In this essay, we lay out reasons for optimism and skepticism.
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Affiliation(s)
- William J Bosl
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States.,Health Informatics Program, University of San Francisco, San Francisco, CA, United States
| | - Alan Leviton
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States
| | - Tobias Loddenkemper
- Boston Children's Hospital, Boston, MA, United States.,Harvard Medical School, Boston, MA, United States
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