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For: Chen X, Liu J, Guo Z, Wu T, Hou J, Cheng J. Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14. Sci Rep 2021;11:10943. [PMID: 34035363 DOI: 10.1038/s41598-021-90303-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 05/10/2021] [Indexed: 11/28/2022]  Open
Number Cited by Other Article(s)
1
Huang GJ, Parry TK, McLaughlin WA. Assessment of the Performances of the Protein Modeling Techniques Participating in CASP15 Using a Structure-Based Functional Site Prediction Approach: ResiRole. Bioengineering (Basel) 2023;10:1377. [PMID: 38135968 PMCID: PMC10740689 DOI: 10.3390/bioengineering10121377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 11/27/2023] [Accepted: 11/28/2023] [Indexed: 12/24/2023]  Open
2
Chen X, Morehead A, Liu J, Cheng J. A gated graph transformer for protein complex structure quality assessment and its performance in CASP15. Bioinformatics 2023;39:i308-i317. [PMID: 37387159 PMCID: PMC10311325 DOI: 10.1093/bioinformatics/btad203] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]  Open
3
Data-Based Engine Torque and NOx Raw Emission Prediction. ENERGIES 2022. [DOI: 10.3390/en15124346] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
4
Evaluation of Deep Neural Network ProSPr for Accurate Protein Distance Predictions on CASP14 Targets. Int J Mol Sci 2021;22:ijms222312835. [PMID: 34884640 PMCID: PMC8657919 DOI: 10.3390/ijms222312835] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 11/22/2021] [Accepted: 11/25/2021] [Indexed: 12/02/2022]  Open
5
Wang W, Wang J, Li Z, Xu D, Shang Y. MUfoldQA_G: High-accuracy protein model QA via retraining and transformation. Comput Struct Biotechnol J 2021;19:6282-6290. [PMID: 34900138 PMCID: PMC8636996 DOI: 10.1016/j.csbj.2021.11.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 11/10/2021] [Accepted: 11/14/2021] [Indexed: 11/21/2022]  Open
6
Gao M, Lund-Andersen P, Morehead A, Mahmud S, Chen C, Chen X, Giri N, Roy RS, Quadir F, Effler TC, Prout R, Abraham S, Elwasif W, Haas NQ, Skolnick J, Cheng J, Sedova A. High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function. WORKSHOP ON MACHINE LEARNING IN HPC ENVIRONMENTS. WORKSHOP ON MACHINE LEARNING IN HPC ENVIRONMENTS 2021;2021:46-57. [PMID: 35112110 PMCID: PMC8802329 DOI: 10.1109/mlhpc54614.2021.00010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
7
Reza MS, Zhang H, Hossain MT, Jin L, Feng S, Wei Y. COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization. MEMBRANES 2021;11:membranes11070503. [PMID: 34209399 PMCID: PMC8305966 DOI: 10.3390/membranes11070503] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 06/24/2021] [Accepted: 06/25/2021] [Indexed: 11/17/2022]
8
Pakhrin SC, Shrestha B, Adhikari B, KC DB. Deep Learning-Based Advances in Protein Structure Prediction. Int J Mol Sci 2021;22:5553. [PMID: 34074028 PMCID: PMC8197379 DOI: 10.3390/ijms22115553] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 05/12/2021] [Accepted: 05/18/2021] [Indexed: 12/29/2022]  Open
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