The effect of COVID19 pandemic restrictions on an urban rodent population

Waste reduction decreases rat activity from peri-urban environment

Globally, species in the genus Rattus (specifically Rattus rattus and Rattus norvegicus), are some of the most influential invasive taxa due to their high rates of competitive exclusion and large dietary breadth. However, the specific foraging strategies of urban-adjacent populations remain largely unknown. We examined Rattus spp. dependency on human food supplementation in a population on adjacent non-developed (or peri-urban) land. Via linear regression modeling, we measured rodent activity changes between native and invasive species before and after a decrease in human supplementation due to the COVID-19 lockdown in Santa Cruz, California, USA. We documented invasive rat activity via camera traps in normal (pre-COVID lockdown) conditions near dining halls and similar waste sources, and again under COVID lockdown conditions when sources of human supplementation were drastically decreased. After 120 trap nights we found a significant decrease (p < 0.001) in Rattus activity after the removal of human refuse, while native small mammal activity remained unchanged (p = 0.1). These results have strong conservation implications, as they support the hypothesis that proper waste management is an effective, less-invasive form of population control over conventional rodenticides.

Field Efficacy of Anticoagulant Rodenticide Towards Managing Rodent Pests in Jitra Rice Field, Kedah, Malaysia

Frequent encounters with the greater bandicoot rats (Bandicota indica) following high rodent damage towards rice crops and lack of information on the species had encouraged this study to be conducted to test the relevance of using first- and second-generation rodenticide in a field efficacy test. This study also attempts to detect any sign of resistance of current rodent pest populations towards chlorophacinone (0.005%) and flucoumafen (0.05%) for the control of field rats predominant rice field agrosystem of the Kedah in northern peninsular Malaysia. Six different treatments over dry and wet rice planting season together with trapping exercise. The observation was evaluated based on the number of active burrows, counting tiller damage due to rodent attack and trapping index. The results indicated that flucoumafen gives better rodent control and has a better impact (p < 0.05) although chlorophacinone is still relevant to be applied (p < 0.05). Treatments during the off-planting season (September-February) are more effective compared to the main planting season (March-August). Rodent control during the early off-planting season is encouraged for better rodent management in the rice field and the use of bait stations to increase the weatherability of the baits.

Older urban rats are infected with the zoonotic nematode Angiostrongylus cantonensis

Rats, being synanthropic, are hosts to agents of zoonotic diseases that pose a threat to human and domestic animal health. The nematode parasite Angiostrongylus cantonensis, commonly known as the rat lungworm, is no exception; it can cause potentially fatal neural disease in humans, dogs and other species. The distribution of A. cantonensis (haplotypes SYD.1 and Ac13) and its close relative, Angiostrongylus mackerrasae is not well understood in Australia. We investigated the prevalence of Angiostrongylus in rats in Sydney, Australia, primarily via faecal qPCR, and identified the species and haplotypes using partial cox1 sequencing. We found a moderate prevalence of infection (29%; 95% CI: 16.1-46.6%) in black (Rattus rattus) and brown (Rattus norvegicus) rats around public parks and residential areas. This study demonstrates that Sydney's urban rat population is a reservoir for A. cantonensis. Modelling infection status as a function of rat species, sex, tibia length (as a proxy for age), and health index (a measure of weight by size) revealed that older rats are statistically more likely to be infected (χ 2 1 = 5.331, P = 0.021). We observed a dominant presence of the A. cantonensis SYD.1 haplotype, for which the implications are not yet known. No A. mackerassae was detected, leading us to suspect it may have a more restricted host- and geographical range. Overall, this study illustrates the presence and potential risk of A. cantonensis infection in Sydney. Public education regarding transmission routes and preventative measures is crucial to safeguard human and animal health.

Association between anthropization and rodent reservoirs of zoonotic pathogens in Northwestern Mexico

The world is facing a major pulse of ecological and social changes that may favor the risk of zoonotic outbreaks. Such risk facilitation may occur through the modification of the host's community diversity and structure, leading to an increase in pathogen reservoirs and the contact rate between these reservoirs and humans. Here, we examined whether anthropization alters the relative abundance and richness of zoonotic reservoir and non-reservoir rodents in three Socio-Ecological Systems. We hypothesized that anthropization increases the relative abundance and richness of rodent reservoirs while decreasing non-reservoir species. We first developed an Anthropization index based on 15 quantitative socio-ecological variables classified into five groups: 1) Vegetation type, 2) Urbanization degree, 3) Water quality, 4) Potential contaminant sources, and 5) Others. We then monitored rodent communities in three regions of Northwestern Mexico (Baja California, Chihuahua, and Sonora). A total of 683 rodents of 14 genera and 27 species were captured, nine of which have been identified as reservoirs of zoonotic pathogens (359 individuals, 53%). In all regions, we found that as anthropization increased, the relative abundance of reservoir rodents increased; in contrast, the relative abundance of non-reservoir rodents decreased. In Sonora, reservoir richness increased with increasing anthropization, while in Baja California and Chihuahua non-reservoir richness decreased as anthropization increased. We also found a significant positive relationship between the anthropization degree and the abundance of house mice (Mus musculus) and deer mice (Peromyscus maniculatus), the most abundant reservoir species in the study. These findings support the hypothesis that reservoir species of zoonotic pathogens increase their abundance in disturbed environments, which may increase the risk of pathogen exposure to humans, while anthropization creates an environmental filtering that promotes the local extinction of non-reservoir species.

Prevalence of Gastrointestinal Parasites in Zoo Animals and Phylogenetic Characterization of Toxascaris leonina (Linstow, 1902) and Baylisascaris transfuga (Rudolphi, 1819) in Jiangsu Province, Eastern China

The burden of gastrointestinal parasites in zoo animals has serious implications for their welfare and the health of veterinarians and visitors. Zhuyuwan Zoo is located in the eastern suburb of Yangzhou city in eastern China, in which over 40 species of zoo animals are kept. In order to understand the infection status of GI parasites in Zhuyuwan Zoo, a total of 104 fresh fecal samples collected randomly from birds (n = 19), primates (n = 19), and non-primate mammals (n = 66) were analyzed using the saturated saline flotation technique and nylon sifter elutriation and sieving method for eggs/oocysts, respectively. Two Ascaris species were molecularly characterized. The results showed that the overall prevalence of parasitic infection was 42.3% (44/104). The parasitic infection rate in birds, primates, and non-primate mammals were 26.3% (5/19), 31.6% (6/19), and 50.0% (33/66), respectively. A total of 11 species of parasites were identified, namely, Trichostrongylidae, Capillaria sp., Trichuris spp., Strongyloides spp., Amidostomum sp., Toxascaris leonina, Baylisascaris transfuga, Parascaris equorum, Paramphistomum spp., Fasciola spp., and Eimeria spp. Paramphistomum spp. eggs were first detected from the captive Père David's deer, and Fasciola spp. eggs were first reported from sika deer in zoo in China. A sequence analysis of ITS-2 and cox1 showed that the eggs isolated from the African lion (Panthera leo Linnaeus, 1758) were T. leonina, and the eggs from the brown bear (Ursus arctos Linnaeus, 1758) were B. transfuga. The public health threat posed by these potential zoonotic parasitic agents requires attention. These results lay a theoretical foundation for prevention and control of wild animal parasitic diseases at zoos in China.

Changes in the feeding ecology of an opportunistic predator inhabiting urban environments in response to COVID-19 lockdown

Urban-dwelling species present feeding and behavioural innovation that enable them to adjust to anthropogenic food subsidies available in cities. In 2020, the SARS-CoV-2 virus outbreak resulted in unprecedented reduction in the human activity worldwide associated with the human lockdown. This situation opened an excellent opportunity to investigate the capability of urban wildlife to cope with this anthropopause event. Here, we investigated the effects of the COVID-19 lockdown on the feeding strategies of the urban yellow-legged gull (Larus michahellis) population inhabiting the highly dense city of Barcelona (NE Spain). We compared the diet of chicks (through stomach content and stable isotope analyses) sampled randomly around the city of Barcelona before (2018 and 2019), during (2020) and after (2021) the COVID-19 lockdown. The results revealed that the anthropopause associated with the lockdown had an effect on the diet of this urban-dwelling predator. The diversity of prey consumed during the lockdown was lower, and consumption of urban birds (pigeons and parakeets) and marine prey (fishery discards and natural prey) decreased during the year of lockdown. Although it was not analysed, these diet changes probably were associated with variations in the availability of these resources due to the decrease in human activity during the lockdown. These results demonstrate the trophic flexibility of urban-dwelling species to cope with the changes in the availability of human-related anthropogenic resources in urban marine ecosystems.

Molecular detection of Leishmania infantum in rats and sand flies in the urban sewers of Barcelona, Spain

Background

Classically, dogs have been considered to be the only reservoir of leishmaniasis in urban areas. However, in a previous study, we found a 33.3% prevalence of Leishmania infantum in the spleens of Norway rats (Rattus norvegicus) sampled in the underground sewer system of the city of Barcelona (Spain). The aim of the present study was to verify, using molecular methods, the potential reservoir role of these rats in the same sewer system.

Methods

A sensitive real-time PCR (qPCR) assay, DNA sequencing and phylogenetic analysis were carried out to identify and quantify the presence of L. infantum DNA in sand fly individuals captured in the same underground sewer system of Barcelona as in our previous study and in the spleens and ears of rats captured in the same sewer system.

Results

Leishmania infantum DNA was found in 14 of the 27 (51.9%) sand flies identified as Phlebotomus perniciosus, and 10 of the 24 (41.7%) rats studied were infected. Leishmania infantum was found in the spleens (70%) and in the ears (40%) of the infected rats. Quantitative results revealed the presence of high loads of L. infantum in the rats studied (> 3 × 10⁶ parasites/g ear tissue) and among the sand flies (> 34 × 10⁶ parasites in 1 individual).

Conclusions

The molecular methods used in this study demonstrated a high prevalence of L. infantum in the underground sewer populations of both R. norvegicus and P. perniciosus. These results suggest that sewer rats, in addition to dogs, are likely to act as reservoirs of leishmaniasis in cities, where sewer systems seem to offer the ideal scenario for the transmission of leishmaniasis. Therefore, to achieve the WHO 2030 target on the elimination of leishmaniasis as a public health problem successfully, an efficient control strategy against leishmaniasis in rats and sand flies should be implemented, particularly in the sewer systems of urban areas of endemic countries.

Graphical Abstract

Supplementary Information

The online version contains supplementary material available at 10.1186/s13071-022-05309-4.

Rats and the COVID-19 pandemic: considering the influence of social distancing on a global commensal pest

Rats contaminate foods and spread pathogens. Thus, changes in rat populations have consequences for society, especially in densely-populated cities. Following widespread social distancing and lockdown measures to curtail SARS-CoV-2, worldwide media outlets reported increased sightings of rats. To document possible changes in rat populations, we: (i) examined public service requests in the 6 years before, and during, ‘lockdown’ in New York City; (ii) used spatial analyses to identify calls in proximity to food service establishments (FSE); and (iii) surveyed pest-management companies. Over 6 years prior to the pandemic, we found a consistent moderate spatial association (r = 0.35) between FSE and rat-related calls. During the early stages of the pandemic, the association between rat reports and food services did not decrease as would be expected by restaurant closures, but instead modestly increased (r = 0.45). There was a 29.5% decrease in rat reports, overall. However, hotspot analysis showed that new reports were highly localized, yet absent in several industrial areas they were previously observed in, potentially masking a higher proportion of calls in neighborhoods near closed restaurants. Additionally, 37% of pest management companies surveyed reported that, unlike previous years, 50–100% of requests were from new clients and addresses. The finding that hotspots remained nearby dense clusters of restaurants does not support the common narrative that rats moved long distances. Rather, our results are consistent with rats finding nearby alternative food resources. Tracking these dynamics as the COVID-19 pandemic abates will be an important step to identifying how rats respond to society returning to normal activity patterns.