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For: Gisriel CJ, Wang J, Brudvig GW, Bryant DA. Opportunities and challenges for assigning cofactors in cryo-EM density maps of chlorophyll-containing proteins. Commun Biol 2020;3:408. [PMID: 32733087 PMCID: PMC7393486 DOI: 10.1038/s42003-020-01139-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2020] [Accepted: 07/10/2020] [Indexed: 01/21/2023]  Open
Number Cited by Other Article(s)
1
Gisriel CJ. Recent structural discoveries of photosystems I and II acclimated to absorb far-red light. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024;1865:149032. [PMID: 38401604 PMCID: PMC11162955 DOI: 10.1016/j.bbabio.2024.149032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 01/22/2024] [Accepted: 02/09/2024] [Indexed: 02/26/2024]
2
Gisriel CJ, Ranepura G, Brudvig GW, Gunner MR. Assignment of chlorophyll d in the ChlD1 site of the electron transfer chain of far-red light acclimated photosystem II supported by MCCE binding calculations. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024;1865:149496. [PMID: 39038640 DOI: 10.1016/j.bbabio.2024.149496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 07/15/2024] [Accepted: 07/16/2024] [Indexed: 07/24/2024]
3
Gisriel CJ, Shen G, Brudvig GW, Bryant DA. Structure of the antenna complex expressed during far-red light photoacclimation in Synechococcus sp. PCC 7335. J Biol Chem 2024;300:105590. [PMID: 38141759 PMCID: PMC10810746 DOI: 10.1016/j.jbc.2023.105590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Revised: 11/28/2023] [Accepted: 12/12/2023] [Indexed: 12/25/2023]  Open
4
Kimura A, Kitoh-Nishioka H, Kondo T, Oh-Oka H, Itoh S, Azai C. Experimental and Theoretical Mutation of Exciton States on the Smallest Type-I Photosynthetic Reaction Center Complex of a Green Sulfur Bacterium Chlorobaclum tepidum. J Phys Chem B 2024;128:731-743. [PMID: 38198639 DOI: 10.1021/acs.jpcb.3c07424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
5
Gisriel CJ, Flesher DA, Long Z, Liu J, Wang J, Bryant DA, Batista VS, Brudvig GW. A quantitative assessment of (bacterio)chlorophyll assignments in the cryo-EM structure of the Chloracidobacterium thermophilum reaction center. PHOTOSYNTHESIS RESEARCH 2023:10.1007/s11120-023-01047-5. [PMID: 37749456 DOI: 10.1007/s11120-023-01047-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 08/31/2023] [Indexed: 09/27/2023]
6
Gisriel CJ, Shen G, Flesher DA, Kurashov V, Golbeck JH, Brudvig GW, Amin M, Bryant DA. Structure of a dimeric photosystem II complex from a cyanobacterium acclimated to far-red light. J Biol Chem 2022;299:102815. [PMID: 36549647 PMCID: PMC9843442 DOI: 10.1016/j.jbc.2022.102815] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022]  Open
7
Wang J, Liu J, Gisriel CJ, Wu S, Maschietto F, Flesher DA, Lolis E, Lisi GP, Brudvig GW, Xiong Y, Batista VS. How to correct relative voxel scale factors for calculations of vector-difference Fourier maps in cryo-EM. J Struct Biol 2022;214:107902. [PMID: 36202310 DOI: 10.1016/j.jsb.2022.107902] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/23/2022] [Accepted: 09/28/2022] [Indexed: 12/05/2022]
8
Seki S, Nakaniwa T, Castro-Hartmann P, Sader K, Kawamoto A, Tanaka H, Qian P, Kurisu G, Fujii R. Structural insights into blue-green light utilization by marine green algal light harvesting complex II at 2.78 Å. BBA ADVANCES 2022;2:100064. [PMID: 37082593 PMCID: PMC10074980 DOI: 10.1016/j.bbadva.2022.100064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 11/09/2022] [Accepted: 11/09/2022] [Indexed: 11/13/2022]  Open
9
Molecular Evolution of Far-Red Light-Acclimated Photosystem II. Microorganisms 2022;10:microorganisms10071270. [PMID: 35888987 PMCID: PMC9325196 DOI: 10.3390/microorganisms10071270] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 06/17/2022] [Accepted: 06/18/2022] [Indexed: 12/10/2022]  Open
10
Kimura A, Kitoh-Nishioka H, Aota T, Hamaguchi T, Yonekura K, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Ifuku K, Yamashita E, Kashino Y, Itoh S. Theoretical Model of the Far-Red-Light-Adapted Photosystem I Reaction Center of Cyanobacterium Acaryochloris marina Using Chlorophyll d and the Effect of Chlorophyll Exchange. J Phys Chem B 2022;126:4009-4021. [PMID: 35617171 DOI: 10.1021/acs.jpcb.2c00869] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Hernández-Prieto MA, Hiller R, Chen M. Chlorophyll f can replace chlorophyll a in the soluble antenna of dinoflagellates. PHOTOSYNTHESIS RESEARCH 2022;152:13-22. [PMID: 34988868 DOI: 10.1007/s11120-021-00890-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 11/29/2021] [Indexed: 06/14/2023]
12
MacGregor-Chatwin C, Nürnberg DJ, Jackson PJ, Vasilev C, Hitchcock A, Ho MY, Shen G, Gisriel CJ, Wood WH, Mahbub M, Selinger VM, Johnson MP, Dickman MJ, Rutherford AW, Bryant DA, Hunter CN. Changes in supramolecular organization of cyanobacterial thylakoid membrane complexes in response to far-red light photoacclimation. SCIENCE ADVANCES 2022;8:eabj4437. [PMID: 35138895 PMCID: PMC8827656 DOI: 10.1126/sciadv.abj4437] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Accepted: 12/15/2021] [Indexed: 06/14/2023]
13
Gisriel CJ, Flesher DA, Shen G, Wang J, Ho MY, Brudvig GW, Bryant DA. Structure of a photosystem I-ferredoxin complex from a marine cyanobacterium provides insights into far-red light photoacclimation. J Biol Chem 2022;298:101408. [PMID: 34793839 PMCID: PMC8689207 DOI: 10.1016/j.jbc.2021.101408] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 11/08/2021] [Accepted: 11/09/2021] [Indexed: 01/08/2023]  Open
14
Gisriel CJ, Shen G, Ho MY, Kurashov V, Flesher DA, Wang J, Armstrong WH, Golbeck JH, Gunner MR, Vinyard DJ, Debus RJ, Brudvig GW, Bryant DA. Structure of a monomeric photosystem II core complex from a cyanobacterium acclimated to far-red light reveals the functions of chlorophylls d and f. J Biol Chem 2022;298:101424. [PMID: 34801554 PMCID: PMC8689208 DOI: 10.1016/j.jbc.2021.101424] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 11/12/2021] [Accepted: 11/13/2021] [Indexed: 11/26/2022]  Open
15
Sirohiwal A, Pantazis DA. Electrostatic profiling of photosynthetic pigments: implications for directed spectral tuning. Phys Chem Chem Phys 2021;23:24677-24684. [PMID: 34708851 DOI: 10.1039/d1cp02580e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
16
Hamaguchi T, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Itoh S, Ifuku K, Yamashita E, Maeda K, Yonekura K, Kashino Y. Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat Commun 2021;12:2333. [PMID: 33879791 PMCID: PMC8058080 DOI: 10.1038/s41467-021-22502-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 03/18/2021] [Indexed: 01/09/2023]  Open
17
Wang J, Natchiar SK, Moore PB, Klaholz BP. Identification of Mg2+ ions next to nucleotides in cryo-EM maps using electrostatic potential maps. Acta Crystallogr D Struct Biol 2021;77:534-539. [PMID: 33825713 PMCID: PMC8025889 DOI: 10.1107/s2059798321001893] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 02/16/2021] [Indexed: 11/10/2022]  Open
18
Çoruh O, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, Gerle C, Nowaczyk MM, Kurisu G. Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster. Commun Biol 2021;4:304. [PMID: 33686186 PMCID: PMC7940658 DOI: 10.1038/s42003-021-01808-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 02/05/2021] [Indexed: 01/31/2023]  Open
19
Gisriel CJ, Huang HL, Reiss KM, Flesher DA, Batista VS, Bryant DA, Brudvig GW, Wang J. Quantitative assessment of chlorophyll types in cryo-EM maps of photosystem I acclimated to far-red light. BBA ADVANCES 2021;1:100019. [PMID: 37082022 PMCID: PMC10074859 DOI: 10.1016/j.bbadva.2021.100019] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
20
Breaking the Red Limit: Efficient Trapping of Long-Wavelength Excitations in Chlorophyll-f-Containing Photosystem I. Chem 2021. [DOI: 10.1016/j.chempr.2020.10.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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