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Färkkilä SMA, Mortimer M, Jaaniso R, Kahru A, Kiisk V, Kikas A, Kozlova J, Kurvet I, Mäeorg U, Otsus M, Kasemets K. Comparison of Toxicity and Cellular Uptake of CdSe/ZnS and Carbon Quantum Dots for Molecular Tracking Using Saccharomyces cerevisiae as a Fungal Model. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 14:10. [PMID: 38202465 PMCID: PMC10781119 DOI: 10.3390/nano14010010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/12/2023] [Accepted: 12/15/2023] [Indexed: 01/12/2024]
Abstract
Plant resource sharing mediated by mycorrhizal fungi has been a subject of recent debate, largely owing to the limitations of previously used isotopic tracking methods. Although CdSe/ZnS quantum dots (QDs) have been successfully used for in situ tracking of essential nutrients in plant-fungal systems, the Cd-containing QDs, due to the intrinsic toxic nature of Cd, are not a viable system for larger-scale in situ studies. We synthesized amino acid-based carbon quantum dots (CQDs; average hydrodynamic size 6 ± 3 nm, zeta potential -19 ± 12 mV) and compared their toxicity and uptake with commercial CdSe/ZnS QDs that we conjugated with the amino acid cysteine (Cys) (average hydrodynamic size 308 ± 150 nm, zeta potential -65 ± 4 mV) using yeast Saccharomyces cerevisiae as a proxy for mycorrhizal fungi. We showed that the CQDs readily entered yeast cells and were non-toxic up to 100 mg/L. While the Cys-conjugated CdSe/ZnS QDs were also not toxic to yeast cells up to 100 mg/L, they were not taken up into the cells but remained on the cell surfaces. These findings suggest that CQDs may be a suitable tool for molecular tracking in fungi (incl. mychorrhizal fungi) due to their ability to enter fungal cells.
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Affiliation(s)
- Sanni M. A. Färkkilä
- Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409 Tartu, Estonia
| | - Monika Mortimer
- Laboratory of Environmental Toxicology, National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, 12618 Tallinn, Estonia; (M.M.); (A.K.); (I.K.); (M.O.)
| | - Raivo Jaaniso
- Institute of Physics, University of Tartu, W. Ostwaldi 1, 50411 Tartu, Estonia; (R.J.); (V.K.); (A.K.); (J.K.)
| | - Anne Kahru
- Laboratory of Environmental Toxicology, National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, 12618 Tallinn, Estonia; (M.M.); (A.K.); (I.K.); (M.O.)
| | - Valter Kiisk
- Institute of Physics, University of Tartu, W. Ostwaldi 1, 50411 Tartu, Estonia; (R.J.); (V.K.); (A.K.); (J.K.)
| | - Arvo Kikas
- Institute of Physics, University of Tartu, W. Ostwaldi 1, 50411 Tartu, Estonia; (R.J.); (V.K.); (A.K.); (J.K.)
| | - Jekaterina Kozlova
- Institute of Physics, University of Tartu, W. Ostwaldi 1, 50411 Tartu, Estonia; (R.J.); (V.K.); (A.K.); (J.K.)
| | - Imbi Kurvet
- Laboratory of Environmental Toxicology, National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, 12618 Tallinn, Estonia; (M.M.); (A.K.); (I.K.); (M.O.)
| | - Uno Mäeorg
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411 Tartu, Estonia;
| | - Maarja Otsus
- Laboratory of Environmental Toxicology, National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, 12618 Tallinn, Estonia; (M.M.); (A.K.); (I.K.); (M.O.)
| | - Kaja Kasemets
- Laboratory of Environmental Toxicology, National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, 12618 Tallinn, Estonia; (M.M.); (A.K.); (I.K.); (M.O.)
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van 't Padje A, Klein M, Caldas V, Oyarte Galvez L, Broersma C, Hoebe N, Sanders IR, Shimizu T, Kiers ET. Decreasing relatedness among mycorrhizal fungi in a shared plant network increases fungal network size but not plant benefit. Ecol Lett 2021; 25:509-520. [PMID: 34971476 PMCID: PMC9305232 DOI: 10.1111/ele.13947] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 11/03/2021] [Accepted: 11/17/2021] [Indexed: 11/28/2022]
Abstract
Theory suggests that relatives will cooperate more, and compete less, because of an increased benefit for shared genes. In symbiotic partnerships, hosts may benefit from interacting with highly related symbionts because there is less conflict among the symbionts. This has been difficult to test empirically. We used the arbuscular mycorrhizal symbiosis to study the effects of fungal relatedness on host and fungal benefits, creating fungal networks varying in relatedness between two hosts, both in soil and in‐vitro. To determine how fungal relatedness affected overall transfer of nutrients, we fluorescently tagged phosphorus and quantified resource distribution between two root systems. We found that colonization by less‐related fungi was associated with increased fungal growth, lower transport of nutrients across the network, and lower plant benefit ‐ likely an outcome of increased fungal competition. More generally, we demonstrate how symbiont relatedness can mediate benefits of symbioses.
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Affiliation(s)
- Anouk van 't Padje
- Laboratory of Genetics, Wageningen University & Research, Wageningen, the Netherlands.,Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | - Malin Klein
- Laboratory of Genetics, Wageningen University & Research, Wageningen, the Netherlands
| | - Victor Caldas
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.,AMOLF Institute, Amsterdam, the Netherlands
| | - Loreto Oyarte Galvez
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.,AMOLF Institute, Amsterdam, the Netherlands
| | - Cathleen Broersma
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | - Nicky Hoebe
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | - Ian R Sanders
- Departent of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | | | - E Toby Kiers
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
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Färkkilä SMA, Kiers ET, Jaaniso R, Mäeorg U, Leblanc RM, Treseder KK, Kang Z, Tedersoo L. Fluorescent nanoparticles as tools in ecology and physiology. Biol Rev Camb Philos Soc 2021; 96:2392-2424. [PMID: 34142416 DOI: 10.1111/brv.12758] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 12/21/2022]
Abstract
Fluorescent nanoparticles (FNPs) have been widely used in chemistry and medicine for decades, but their employment in biology is relatively recent. Past reviews on FNPs have focused on chemical, physical or medical uses, making the extrapolation to biological applications difficult. In biology, FNPs have largely been used for biosensing and molecular tracking. However, concerns over toxicity in early types of FNPs, such as cadmium-containing quantum dots (QDs), may have prevented wide adoption. Recent developments, especially in non-Cd-containing FNPs, have alleviated toxicity problems, facilitating the use of FNPs for addressing ecological, physiological and molecule-level processes in biological research. Standardised protocols from synthesis to application and interdisciplinary approaches are critical for establishing FNPs in the biologists' tool kit. Here, we present an introduction to FNPs, summarise their use in biological applications, and discuss technical issues such as data reliability and biocompatibility. We assess whether biological research can benefit from FNPs and suggest ways in which FNPs can be applied to answer questions in biology. We conclude that FNPs have a great potential for studying various biological processes, especially tracking, sensing and imaging in physiology and ecology.
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Affiliation(s)
- Sanni M A Färkkilä
- Institute of Ecology and Earth Sciences, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - E Toby Kiers
- Department of Ecological Science, Vrije Universiteit Amsterdam, De Boelelaan 1085, NL-1081 HV, Amsterdam, Noord-Holland, The Netherlands
| | - Raivo Jaaniso
- Institute of Physics, University of Tartu, W. Ostwaldi Str 1, 50411, Tartu, Tartumaa, Estonia
| | - Uno Mäeorg
- Institute of Chemistry, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
| | - Roger M Leblanc
- Department of Chemistry, Cox Science Center, University of Miami, 1301 Memorial Drive, Coral Gables, FL, 33124, U.S.A
| | - Kathleen K Treseder
- Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of California, Irvine, 3106 Biological Sciences III, Mail Code: 2525, 92697, Irvine, CA, U.S.A
| | - Zhenhui Kang
- Institute of Functional Nano and Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-based Functional Materials and Devices, Soochow University, Suzhou, 215123, China
| | - Leho Tedersoo
- Institute of Ecology and Earth Sciences, University of Tartu, Ravila 14a, 50411, Tartu, Estonia
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van ’t Padje A, Bonfante P, Ciampi LT, Kiers ET. Quantifying Nutrient Trade in the Arbuscular Mycorrhizal Symbiosis Under Extreme Weather Events Using Quantum-Dot Tagged Phosphorus. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.613119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Given the current trends in climate change, extreme weather events are expected to increase in strength and frequency. Such events can impact species survival and species interactions. One of the most ubiquitous symbioses on earth is the nutrient exchange partnership between arbuscular mycorrhizal fungi and their host plants. While past work has shown that mycorrhizal fungi can help alleviate stress, it is unknown how phosphorus uptake by plants to fungi is affected by extreme weather events, such as flooding and heat waves. To test this response, we grewMedicago truncatulahost plants with or without mycorrhizal fungi and then exposed them to extreme weather treatments: increasing soil temperature by 12°C, or by flooding the plant roots for 7 days. We measured plant and fungal performance, and quantified phosphorus (P) uptake before and after extreme weather treatments using a technique in which we tagged apatite, a form of rock phosphorus, with fluorescing quantum-dots (QDs) nanoparticles. We then measured fluorescence in root and shoot tissue at harvest. We found that plants and arbuscular mycorrhizal fungi were affected by soil flooding, with plant survival, fungal colonization and QD-apatite uptake decreasing under flooded conditions. We did not see these negative effects in the heat treatment. While the presence of arbuscular mycorrhizal fungi affected plant biomass allocation, leading to an increase in shoot biomass, the symbiosis did not increase plant survival, total biomass or QD uptake in either treatment. More generally, we found host tissue contained roughly 80% more QD-apatite from the pre-treatment compared to the post-treatment nutrient injection. Future studies should focus on various plant-fungal combinations to create databases on which predictive models to extreme weather events can be constructed.
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Whiteside MD, Werner GDA, Caldas VEA, Van't Padje A, Dupin SE, Elbers B, Bakker M, Wyatt GAK, Klein M, Hink MA, Postma M, Vaitla B, Noë R, Shimizu TS, West SA, Kiers ET. Mycorrhizal Fungi Respond to Resource Inequality by Moving Phosphorus from Rich to Poor Patches across Networks. Curr Biol 2019; 29:2043-2050.e8. [PMID: 31178314 PMCID: PMC6584331 DOI: 10.1016/j.cub.2019.04.061] [Citation(s) in RCA: 63] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 04/04/2019] [Accepted: 04/23/2019] [Indexed: 01/01/2023]
Abstract
The world's ecosystems are characterized by an unequal distribution of resources [1]. Trade partnerships between organisms of different species-mutualisms-can help individuals cope with such resource inequality [2-4]. Trade allows individuals to exchange commodities they can provide at low cost for resources that are otherwise impossible or more difficult to access [5, 6]. However, as resources become increasingly patchy in time or space, it is unknown how organisms alter their trading strategies [7, 8]. Here, we show how a symbiotic fungus mediates trade with a host root in response to different levels of resource inequality across its network. We developed a quantum-dot-tracking technique to quantify phosphorus-trading strategies of arbuscular mycorrhizal fungi simultaneously exposed to rich and poor resource patches. By following fluorescent nanoparticles of different colors across fungal networks, we determined where phosphorus was hoarded, relocated, and transferred to plant hosts. We found that increasing exposure to inequality stimulated trade. Fungi responded to high resource variation by (1) increasing the total amount of phosphorus distributed to host roots, (2) decreasing allocation to storage, and (3) differentially moving resources within the network from rich to poor patches. Using single-particle tracking and high-resolution video, we show how dynamic resource movement may help the fungus capitalize on value differences across the trade network, physically moving resources to areas of high demand to gain better returns. Such translocation strategies can help symbiotic organisms cope with exposure to resource inequality.
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Affiliation(s)
- Matthew D Whiteside
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Gijsbert D A Werner
- Department of Zoology, University of Oxford, 11a Mansfield Road, Oxford OX1 3SZ, UK; Balliol College, University of Oxford, Oxford OX1 3BJ, UK
| | - Victor E A Caldas
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands; AMOLF Institute, Science Park 104, 1098 XG Amsterdam, the Netherlands
| | - Anouk Van't Padje
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Simon E Dupin
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Bram Elbers
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Milenka Bakker
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Gregory A K Wyatt
- Department of Zoology, University of Oxford, 11a Mansfield Road, Oxford OX1 3SZ, UK
| | - Malin Klein
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands
| | - Mark A Hink
- Section of Molecular Cytology and van Leeuwenhoek Centre for Advanced Microscopy, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, the Netherlands
| | - Marten Postma
- Section of Molecular Cytology and van Leeuwenhoek Centre for Advanced Microscopy, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, the Netherlands
| | - Bapu Vaitla
- Harvard T.H. Chan School of Public Health, 677 Huntington Avenue, Boston, MA 02115, USA
| | - Ronald Noë
- Faculté Psychologie, Université de Strasbourg, 12 Rue Goethe, 67000 Strasbourg, France
| | - Thomas S Shimizu
- AMOLF Institute, Science Park 104, 1098 XG Amsterdam, the Netherlands
| | - Stuart A West
- Department of Zoology, University of Oxford, 11a Mansfield Road, Oxford OX1 3SZ, UK
| | - E Toby Kiers
- Department of Ecological Science, Vrije Universiteit, De Boelelaan 108, 1081 HV Amsterdam, the Netherlands.
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Supramolecular nano-sniffers for ultrasensitive detection of formaldehyde. Biosens Bioelectron 2018; 100:201-207. [DOI: 10.1016/j.bios.2017.09.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Revised: 09/05/2017] [Accepted: 09/07/2017] [Indexed: 11/24/2022]
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Hynson NA, Allison SD, Treseder KK. Quantum Dots Reveal Shifts in Organic Nitrogen Uptake by Fungi Exposed to Long-Term Nitrogen Enrichment. PLoS One 2015; 10:e0138158. [PMID: 26367868 PMCID: PMC4569051 DOI: 10.1371/journal.pone.0138158] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2015] [Accepted: 08/25/2015] [Indexed: 11/19/2022] Open
Abstract
Anthropogenic nitrogen (N) enrichment can alter N dynamics associated with decomposing plant litter. However, it is unclear to what extent these alterations occur via microbial effects (e.g., changes in gene regulation, physiology, or community composition) versus plant litter effects (e.g., changes in composition of N and C compounds). To isolate microbial effects from plant litter effects, we collected plant litter from long-term N fertilized and control plots, reciprocally inoculated it with microbes from the two treatments, and incubated it in a common field setting for three months. We used quantum dots (QDs) to track fungal uptake of glycine and chitosan. Glycine is a relatively simple organic N compound; chitosan is more complex. We found that microbial and litter origins each contributed to a shift in fungal uptake capacities under N fertilization. Specifically, N fungi preferred glycine over chitosan, but control fungi did not. In comparison, litter effects were more subtle, and manifested as a three-way interaction between litter origin, microbial origin, and type of organic N (glycine versus chitosan). In particular, control fungi tended to target chitosan only when incubated with control litter, while N fungi targeted glycine regardless of litter type. Overall, microbial effects may mediate how N dynamics respond to anthropogenic N enrichment in ecosystems.
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Affiliation(s)
- Nicole A. Hynson
- Department of Botany, University of Hawai‘i Manoa, 3190 Maile Way, Honolulu, HI, 96822, United States of America
- * E-mail:
| | - Steven D. Allison
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, 92697, United States of America
| | - Kathleen K. Treseder
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, 92697, United States of America
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Santiago M, Gardner RC. Yeast genes required for conversion of grape precursors to varietal thiols in wine. FEMS Yeast Res 2015; 15:fov034. [PMID: 26038341 DOI: 10.1093/femsyr/fov034] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2015] [Accepted: 05/29/2015] [Indexed: 11/13/2022] Open
Abstract
Three varietal thiols are important for the tropical fruit aromas of Sauvignon blanc: 4-mercapto-4-methylpentan-2-one (4MMP), 3-mercaptohexanol (3MH) and its acetylated derivative 3-mercaptohexyl acetate (3MHA). These thiols are produced by yeast during fermentation from precursors in grape juice. Here we identify genes in Saccharomyces cerevisiae that are required for the transport and cleavage of two thiol precursors: cysteine-4MMP and glutathione-3MH. A full-length copy of IRC7 is absolutely required for the cleavage of both precursors in the tested strains; the deleted form of the enzyme found in most yeast strains is incapable of converting these compounds into detectable thiols. By using strains that overexpress full-length IRC7, we further show that the glutathione transporter OPT1 and the transpeptidase CIS2 are also required for conversion of glut-3MH to its varietal thiol. No transporter for cys-4MMP was identified: a strain deleted for all nine known cysteine transport genes was still capable of converting cys-4MMP to its varietal thiol, and was also able to take up cysteine at high concentrations. Based on these results, we conclude that cysteine and glutathione precursors make a relatively minor contribution to 3MH production from most grape juices.
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Affiliation(s)
- Margarita Santiago
- Wine Science Programme, School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland 1010, New Zealand
| | - Richard C Gardner
- Wine Science Programme, School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland 1010, New Zealand
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