1
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Im HR, Im SJ, Nguyen DV, Jeong SP, Jang A. Real-time diagnosis and monitoring of biofilm and corrosion layer formation on different water pipe materials using non-invasive imaging methods. CHEMOSPHERE 2024; 361:142577. [PMID: 38857632 DOI: 10.1016/j.chemosphere.2024.142577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 06/06/2024] [Accepted: 06/07/2024] [Indexed: 06/12/2024]
Abstract
Water distribution networks play a crucial role in ensuring a reliable water supply, yet they encounter challenges such as corrosion, scale formation, and biofilm growth due to interactions with environmental elements. Biofilms and corrosion layers are significant contaminants in water pipes, formed by complex interactions with pipe materials. As the structure of these contamination layers varies depending on the pipe material, it is essential to investigate the contamination layer for each material individually. Specifically, biofilm growth is typically investigated concerning organic sources, while the growth of humus layers is examined in relation to inorganic elements such as manganese (Mn), iron (Fe), and aluminum (Al), which are major elements and organic substances found in water pipes. Real-time imaging of recently contaminated layers can provide important insights to improve system performance by optimizing operations and cleaning processes. In this study, cast iron (7.10 ± 0.78 nm) exhibits greater surface roughness compared to PVC (5.60 ± 0.14 nm) and provides favorable conditions for biofilm formation due to its positive charge. Over a period of 425 h, the fouling layer on cast iron and PVC surfaces gradually increased in fouling thickness, porosity, roughness, and density, reaching maximum value of 29.72 ± 3.6 μm, 11.44 ± 1.1%, 41673 ± 1025.6 pixels, and 0.80 ± 0.3 fouling layer pixel/layer pixel for cast iron, and 8.15 ± 0.4 μm, 20.64 ± 0.9%, 35916.6 ± 755.7 pixels, and 0.58 ± 0.1 fouling layer pixel/layer pixel, respectively. Within the scope of the current research, CNN model demonstrates high correlation coefficients (0.98 and 0.91) in predicting biofilm thickness for cast iron and PVC. The model also presented high accuracy in predicting porosity for both materials (over 0.91 for cast iron and 0.96 for PVC). While the model accurately predicted biofilm roughness and density for cast iron (correlation coefficients 0.98 and 0.94, respectively), it had lower accuracy for PVC (correlation coefficients 0.92 for both parameters).
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Affiliation(s)
- Hong Rae Im
- Department of Global Smart City, Sungkyunkwan University (SKKU), 2066, Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do, 16419, Republic of Korea.
| | - Sung Ju Im
- Department of Environmental Engineering, Gyeongsang National University, 33 Dongjin-ro, Jinju, 52725, Republic of Korea.
| | - Duc Viet Nguyen
- Centre for Environmental and Energy Research, Ghent University Global Campus, Songdomunhwa-ro, Yeonsu-gu, Incheon-si, 21985, Republic of Korea.
| | - Seong Pil Jeong
- Water Cycle Research Center, Korea Institute of Science and Technology (KIST), Hwarangro 14 Gil 5, Seongbuk-gu, Seoul, 02792, Republic of Korea.
| | - Am Jang
- Department of Global Smart City, Sungkyunkwan University (SKKU), 2066, Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do, 16419, Republic of Korea.
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2
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Battulga B, Munkhbat D, Matsueda M, Atarashi-Andoh M, Oyuntsetseg B, Koarashi J, Kawahigashi M. Uncovering the characteristics of plastic-associated biofilm from the inland river system of Mongolia. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 357:124427. [PMID: 38914199 DOI: 10.1016/j.envpol.2024.124427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 06/21/2024] [Accepted: 06/22/2024] [Indexed: 06/26/2024]
Abstract
The occurrence and characteristics of plastic debris in aquatic and terrestrial environments have been extensively studied. However, limited information exists on the properties and dynamic behavior of plastic-associated biofilms in the environment. In this study, we collected plastic samples from an inland river system in Mongolia and extracted biofilms to uncover their characteristics using spectroscopic, isotopic, and thermogravimetric techniques. Mixtures of organic and mineral particles were detected in the extracted biofilms, revealing plastic as a carrier for exogenous substances, including contaminants, in the river ecosystem. Thermogravimetric analysis (TGA) indicated the predominant contribution of minerals primarily comprising aluminosilicate and calcite, representing approximately 80 wt% of the biofilms. Differential thermal analysis (DTA) coupled with Fourier transform infrared (FTIR) spectrometry operated at 25°C-600 °C enabled the detection of gaseous decomposition products, such as CO2, H2O, CO, and functional groups (O-H, C-H, C-O, CO, CC, and C-C), released from biopolymers in the extracted biofilms. Dehydration, dehydroxylation, and decarboxylation reactions explain the thermal properties of biofilms. The stable carbon (δ13C) and nitrogen (δ15N) isotope ratios of the biofilms demonstrated variable signatures ranging from -24.1‰ to -27.0‰ and 3.1‰-12.3‰, respectively. A significant difference in the δ13C value (p < 0.05) among the upstream, middle, and downstream research sites could be characterized by available organic carbon sources in the river environment, depending on the research sites. This study provides insights into the characteristics and environmental behavior of biofilms which are useful to elucidate the impact of plastic-associated biofilms on organic matter and material cycling in aquatic ecosystems.
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Affiliation(s)
- Batdulam Battulga
- Nuclear Science and Engineering Center, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan; Department of Geography, Tokyo Metropolitan University, Hachioji, Tokyo, 192-0397, Japan.
| | - Dolgormaa Munkhbat
- Department of Geography, Tokyo Metropolitan University, Hachioji, Tokyo, 192-0397, Japan
| | - Makoto Matsueda
- Collaborative Laboratories for Advanced Decommissioning Science, Japan Atomic Energy Agency, Fukushima, 963-7700, Japan
| | - Mariko Atarashi-Andoh
- Nuclear Science and Engineering Center, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan
| | - Bolormaa Oyuntsetseg
- Department of Chemistry, National University of Mongolia, Ikh Surguuliin Gudamj-1, Ulaanbaatar, 14201, Mongolia
| | - Jun Koarashi
- Nuclear Science and Engineering Center, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan
| | - Masayuki Kawahigashi
- Department of Geography, Tokyo Metropolitan University, Hachioji, Tokyo, 192-0397, Japan
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3
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Tian Y, Tian X, Li T, Wang W. Overview of the effects and mechanisms of NO and its donors on biofilms. Crit Rev Food Sci Nutr 2023:1-20. [PMID: 37942962 DOI: 10.1080/10408398.2023.2279687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
Microbial biofilm is undoubtedly a challenging problem in the food industry. It is closely associated with human health and life, being difficult to remove and antibiotic resistance. Therefore, an alternate method to solve these problems is needed. Nitric oxide (NO) as an antimicrobial agent, has shown great potential to disrupt biofilms. However, the extremely short half-life of NO in vivo (2 s) has facilitated the development of relatively more stable NO donors. Recent studies reported that NO could permeate biofilms, causing damage to cellular biomacromolecules, inducing biofilm dispersion by quorum sensing (QS) pathway and reducing intracellular bis-(3'-5')-cyclic dimeric guanosine monophosphate (c-di-GMP) levels, and significantly improving the bactericidal effect without drug resistance. In this review, biofilm hazards and formation processes are presented, and the characteristics and inhibitory effects of NO donors are carefully discussed, with an emphasis on the possible mechanisms of NO resistance to biofilms and some advanced approaches concerning the remediation of NO donor deficiencies. Moreover, the future perspectives, challenges, and limitations of NO donors were summarized comprehensively. On the whole, this review aims to provide the application prospects of NO and its donors in the food industry and to make reliable choices based on these available research results.
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Affiliation(s)
- Yanan Tian
- College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin, China
| | - Xiaojing Tian
- College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin, China
| | - Teng Li
- College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin, China
| | - Wenhang Wang
- College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin, China
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4
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van Hoogstraten SWG, Kuik C, Arts JJC, Cillero-Pastor B. Molecular imaging of bacterial biofilms-a systematic review. Crit Rev Microbiol 2023:1-22. [PMID: 37452571 DOI: 10.1080/1040841x.2023.2223704] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 05/16/2023] [Accepted: 06/05/2023] [Indexed: 07/18/2023]
Abstract
The formation of bacterial biofilms in the human body and on medical devices is a serious human health concern. Infections related to bacterial biofilms are often chronic and difficult to treat. Detailed information on biofilm formation and composition over time is essential for a fundamental understanding of the underlying mechanisms of biofilm formation and its response to anti-biofilm therapy. However, information on the chemical composition, structural components of biofilms, and molecular interactions regarding metabolism- and communication pathways within the biofilm, such as uptake of administered drugs or inter-bacteria communication, remains elusive. Imaging these molecules and their distribution in the biofilm increases insight into biofilm development, growth, and response to environmental factors or drugs. This systematic review provides an overview of molecular imaging techniques used for bacterial biofilm imaging. The techniques included mass spectrometry-based techniques, fluorescence-labelling techniques, spectroscopic techniques, nuclear magnetic resonance spectroscopy (NMR), micro-computed tomography (µCT), and several multimodal approaches. Many molecules were imaged, such as proteins, lipids, metabolites, and quorum-sensing (QS) molecules, which are crucial in intercellular communication pathways. Advantages and disadvantages of each technique, including multimodal approaches, to study molecular processes in bacterial biofilms are discussed, and recommendations on which technique best suits specific research aims are provided.
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Affiliation(s)
- S W G van Hoogstraten
- Laboratory for Experimental Orthopaedics, Department of Orthopaedic Surgery, CAPHRI, Maastricht University Medical Centre, Maastricht, the Netherlands
| | - C Kuik
- Maastricht MultiModal Molecular Imaging Institute (M4I), Maastricht University, Maastricht, the Netherlands
| | - J J C Arts
- Laboratory for Experimental Orthopaedics, Department of Orthopaedic Surgery, CAPHRI, Maastricht University Medical Centre, Maastricht, the Netherlands
- Department of Biomedical Engineering, Orthopaedic Biomechanics, Eindhoven University of Technology, Eindhoven, the Netherlands
| | - B Cillero-Pastor
- Maastricht MultiModal Molecular Imaging Institute (M4I), Maastricht University, Maastricht, the Netherlands
- Department of Cell Biology-Inspired Tissue Engineering, The MERLN Institute for Technology-Inspired Regenerative Medicine, University of Maastricht, Maastricht, the Netherlands
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5
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Carezzano ME, Paletti Rovey MF, Cappellari LDR, Gallarato LA, Bogino P, Oliva MDLM, Giordano W. Biofilm-Forming Ability of Phytopathogenic Bacteria: A Review of its Involvement in Plant Stress. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112207. [PMID: 37299186 DOI: 10.3390/plants12112207] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 05/24/2023] [Accepted: 06/01/2023] [Indexed: 06/12/2023]
Abstract
Phytopathogenic bacteria not only affect crop yield and quality but also the environment. Understanding the mechanisms involved in their survival is essential to develop new strategies to control plant disease. One such mechanism is the formation of biofilms; i.e., microbial communities within a three-dimensional structure that offers adaptive advantages, such as protection against unfavorable environmental conditions. Biofilm-producing phytopathogenic bacteria are difficult to manage. They colonize the intercellular spaces and the vascular system of the host plants and cause a wide range of symptoms such as necrosis, wilting, leaf spots, blight, soft rot, and hyperplasia. This review summarizes up-to-date information about saline and drought stress in plants (abiotic stress) and then goes on to focus on the biotic stress produced by biofilm-forming phytopathogenic bacteria, which are responsible for serious disease in many crops. Their characteristics, pathogenesis, virulence factors, systems of cellular communication, and the molecules implicated in the regulation of these processes are all covered.
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Affiliation(s)
- María Evangelina Carezzano
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Biología Molecular; Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba X5804BYA, Argentina
- Departamento de Microbiología e Inmunología, UNRC, Río Cuarto, Córdoba X5804BYA, Argentina
| | - María Fernanda Paletti Rovey
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Microbiología e Inmunología, UNRC, Río Cuarto, Córdoba X5804BYA, Argentina
| | - Lorena Del Rosario Cappellari
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Biología Molecular; Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba X5804BYA, Argentina
| | | | - Pablo Bogino
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Biología Molecular; Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba X5804BYA, Argentina
| | - María de Las Mercedes Oliva
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Microbiología e Inmunología, UNRC, Río Cuarto, Córdoba X5804BYA, Argentina
| | - Walter Giordano
- Instituto de Biotecnología Ambiental y Salud (INBIAS-CONICET), Córdoba X5804BYA, Argentina
- Departamento de Biología Molecular; Universidad Nacional de Río Cuarto (UNRC), Río Cuarto, Córdoba X5804BYA, Argentina
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6
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Deletion of pbpC Enhances Bacterial Pathogenicity on Tomato by Affecting Biofilm Formation, Exopolysaccharides Production, and Exoenzyme Activities in Clavibacter michiganensis. Int J Mol Sci 2023; 24:ijms24065324. [PMID: 36982399 PMCID: PMC10049144 DOI: 10.3390/ijms24065324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Revised: 02/14/2023] [Accepted: 03/07/2023] [Indexed: 03/18/2023] Open
Abstract
Penicillin-binding proteins (PBPs) are considered essential for bacterial peptidoglycan biosynthesis and cell wall assembly. Clavibacter michiganensis is a representative Gram-positive bacterial species that causes bacterial canker in tomato. pbpC plays a significant role in maintaining cell morphological characteristics and stress responses in C. michiganensis. The current study demonstrated that the deletion of pbpC commonly enhances bacterial pathogenicity in C. michiganensis and revealed the mechanisms through which this occurs. The expression of interrelated virulence genes, including celA, xysA, xysB, and pelA, were significantly upregulated in △pbpC mutants. Compared with those in wild-type strains, exoenzyme activities, the formation of biofilm, and the production of exopolysaccharides (EPS) were significantly increased in △pbpC mutants. It is noteworthy that EPS were responsible for the enhancement in bacterial pathogenicity, with the degree of necrotic tomato stem cankers intensifying with the injection of a gradient of EPS from C. michiganensis. These findings highlight new insights into the role of pbpC affecting bacterial pathogenicity, with an emphasis on EPS, advancing the current understanding of phytopathogenic infection strategies for Gram-positive bacteria.
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7
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Pan M, Li H, Han X, Quan G, Ma W, Guo Q, Li X, Yang B, Ding C, Chen Y, Yun T, Qin J, Jiang S. Effect of hydrodynamics on the transformation of nitrogen in river water by regulating the mass transfer performance of dissolved oxygen in biofilm. CHEMOSPHERE 2023; 312:137013. [PMID: 36397302 DOI: 10.1016/j.chemosphere.2022.137013] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 10/09/2022] [Accepted: 10/23/2022] [Indexed: 06/16/2023]
Abstract
Biofilms drive crucial ecosystem processes in rivers. This study provided the basis for overall quantitative calculations about the contribution of biofilms to the nitrogen cycle. At the early stage of biofilm formation, dissolved oxygen (DO) could penetrate the biofilms. As the biofilm grew and the thickness increased, then the mass transfer of DO was restricted. The microaerobic layer firstly appeared in biofilm under the turbulent flow conditions, with the appearance of the microaerobic and anaerobic layer, the nitrification and denitrification reaction could proceed smoothly in biofilm. And the removal efficiency of total nitrogen (TN) increased as the biofilm matured. Under the turbulent flow conditions, mature biofilms had the smallest thickness, but the highest proportion the anaerobic layer to the biofilm thickness, the highest density, and the highest nitrogen removal efficiency. However, the nitrogen removal efficiency of biofilm was the lowest under laminar flow conditions. The difference of layered structure of biofilm and the DO flux in biofilm explained the difference of nitrogen migration and transformation in river water under different hydrodynamic conditions. This study would help control the growth of biofilm and improve the nitrogen removal capacity of biofilm by regulating hydrodynamic conditions.
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Affiliation(s)
- Mei Pan
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Haizong Li
- Yancheng Environmental Monitoring Center, Yancheng, 224002, PR China
| | - Xiangyun Han
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Guixiang Quan
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Weixing Ma
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Qingyuan Guo
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Xuan Li
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Bairen Yang
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
| | - Cheng Ding
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
| | - Yuxi Chen
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Tao Yun
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Jiaojiao Qin
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Siyi Jiang
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224003, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
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8
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Pan M, Li H, Han X, Ma W, Li X, Guo Q, Yang B, Ding C, Ma Y. Effects of hydrodynamic conditions on the composition, spatiotemporal distribution of different extracellular polymeric substances and the architecture of biofilms. CHEMOSPHERE 2022; 307:135965. [PMID: 35963380 DOI: 10.1016/j.chemosphere.2022.135965] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 07/12/2022] [Accepted: 08/02/2022] [Indexed: 06/15/2023]
Abstract
Microbial biofilms are common on abiotic and biotic surfaces, especially in rivers, which drive crucial ecosystem processes. The microorganisms of biofilms are surrounded by a self-produced extracellular polymeric substance (EPS). In this study, we investigated the effects of different hydrodynamic conditions on the composition, spatiotemporal distribution of different extracellular polymeric substances, and the architecture of biofilms. Multidisciplinary methods offer complementary insights into complex architecture correlations in biofilms. The biofilms formed in turbulent flow with high shear force were thin but dense. However, the biofilms formed under laminar flow conditions were thick but relatively loose. The thickness and compactness of the biofilms formed in the transitional flow were different from those of the other biofilms. The compact structure of the biofilm helped to resist shear forces to minimize detachment. Under the turbulent flow condition, bacteria, exopolysaccharides, and extracellular proteins permeated through the biofilm, and more extracellular polysaccharides enveloped bacteria and extracellular proteins. However, under the transitional flow condition, the extracellular polysaccharides and proteins were fewer than those under the turbulent flow condition; bacteria and algae were seen more prominently in the upper layer of the biofilm. Under the laminar flow condition, the distribution of extracellular polysaccharides, extracellular proteins, and bacteria was relatively uniform throughout the biofilm. The number of extracellular polysaccharides was greater than that of extracellular proteins. The total number of EPS in the biofilm was the largest under turbulent flow condition, followed by that under transitional flow condition and then under laminar flow condition. This study also observed that soluble EPS (S-EPS) were secreted first, followed by loosely bound EPS (LB-EPS) and tightly bound EPS (TB-EPS). In particular, the adhesion of LB-EPS and flocculation capability of TB-EPS play some role in regulating biofilm formation. This study would help to perfect the five-stages theory of biofilm formation.
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Affiliation(s)
- Mei Pan
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Haizong Li
- Yancheng Environmental Monitoring Center, Yancheng, 224002, PR China
| | - Xiangyun Han
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Weixing Ma
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Xuan Li
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Qingyuan Guo
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Bairen Yang
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
| | - Cheng Ding
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
| | - Yuwen Ma
- College of Environmental Science and Engineering, Yancheng Institute of Technology, Yingbin Road #9, Yancheng, 224003, Jiangsu Province, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
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9
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Anbumani S, da Silva AM, Alaferdov A, Puydinger dos Santos MV, Carvalho IGB, de Souza e Silva M, Moshkalev S, Carvalho HF, de Souza AA, Cotta MA. Physiochemically Distinct Surface Properties of SU-8 Polymer Modulate Bacterial Cell-Surface Holdfast and Colonization. ACS APPLIED BIO MATERIALS 2022; 5:4903-4912. [PMID: 36162102 PMCID: PMC9580523 DOI: 10.1021/acsabm.2c00632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Accepted: 09/13/2022] [Indexed: 11/28/2022]
Abstract
SU-8 polymer is an excellent platform for diverse applications due to its high aspect ratio of micro/nanostructure fabrication and exceptional physicochemical and biocompatible properties. Although SU-8 polymer has often been investigated for various biological applications, how its surface properties influence the interaction of bacterial cells with the substrate and its colonization is poorly understood. In this work, we tailor SU-8 nanoscale surface properties to investigate single-cell motility, adhesion, and successive colonization of phytopathogenic bacteria, Xylella fastidiosa. Different surface properties of SU-8 thin films have been prepared using photolithography processing and oxygen plasma treatment. A more significant density of carboxyl groups in hydrophilic plasma-treated SU-8 surfaces promotes faster cell motility in the earlier growth stage. The hydrophobic nature of pristine SU-8 surfaces shows no trackable bacterial motility and 5-10 times more single cells adhered to the surface than its plasma-treated counterpart. In addition, plasma-treated SU-8 samples suppressed bacterial adhesion, with surfaces showing less than 5% coverage. These results not only showcase that SU-8 surface properties can impact the spatiotemporal bacterial behavior but also provide insights into pathogens' prominent ability to evolve and adapt to different surface properties.
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Affiliation(s)
- Silambarasan Anbumani
- Institute
of Physics “Gleb Wataghin”, University of Campinas, Campinas, SP 13083-859, Brazil
| | - Aldeliane M. da Silva
- Institute
of Physics “Gleb Wataghin”, University of Campinas, Campinas, SP 13083-859, Brazil
| | - Andrei Alaferdov
- Center
for Semiconductor Components and Nanotechnologies, University of Campinas, Campinas, SP 13083-870, Brazil
| | | | - Isis G. B. Carvalho
- Citrus
Center APTA “Sylvio Moreira” Agronomic Institute of
Campinas, Cordeirópolis, SP 13490-970, Brazil
| | - Mariana de Souza e Silva
- Citrus
Center APTA “Sylvio Moreira” Agronomic Institute of
Campinas, Cordeirópolis, SP 13490-970, Brazil
| | - Stanislav Moshkalev
- Center
for Semiconductor Components and Nanotechnologies, University of Campinas, Campinas, SP 13083-870, Brazil
| | - Hernandes F. Carvalho
- Department
of Structural and Functional Biology, Institute of Biology, University of Campinas, Campinas, SP 13083-862, Brazil
| | - Alessandra A. de Souza
- Citrus
Center APTA “Sylvio Moreira” Agronomic Institute of
Campinas, Cordeirópolis, SP 13490-970, Brazil
| | - Monica A. Cotta
- Institute
of Physics “Gleb Wataghin”, University of Campinas, Campinas, SP 13083-859, Brazil
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10
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Alonso VPP, Ferreira RCDC, Cotta MA, Kabuki DY. Influence of milk proteins on the adhesion and formation of Bacillus sporothermodurans biofilms: Implications for dairy industrial processing. Food Control 2022. [DOI: 10.1016/j.foodcont.2021.108743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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11
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Karasz DC, Weaver AI, Buckley DH, Wilhelm RC. Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils. Environ Microbiol 2021; 24:1-17. [PMID: 34929753 DOI: 10.1111/1462-2920.15871] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 12/03/2021] [Accepted: 12/07/2021] [Indexed: 11/30/2022]
Abstract
Bacteria can regulate cell morphology in response to environmental conditions, altering their physiological and metabolic characteristics to improve survival. Conditional filamentation, in which cells suspend division while continuing lateral growth, is a strategy with a range of adaptive benefits. Here, we review the causes and consequences of conditional filamentation with respect to bacterial physiology, ecology and evolution. We describe four major benefits from conditional filamentation: stress tolerance, surface colonization, gradient spanning and the facilitation of biotic interactions. Adopting a filamentous growth habit involves fitness trade-offs which are also examined. We focus on the role of conditional filamentation in soil habitats, where filamentous morphotypes are highly prevalent and where environmental heterogeneity can benefit a conditional response. To illustrate the use of information presented in our review, we tested the conditions regulating filamentation by the forest soil isolate Paraburkholderia elongata 5NT . Filamentation by P. elongata was induced at elevated phosphate concentrations, and was associated with the accumulation of intracellular polyphosphate, highlighting the role of filamentation in a phosphate-solubilizing bacterium. Conditional filamentation enables bacteria to optimize their growth and metabolism in environments that are highly variable, a trait that can impact succession, symbioses, and biogeochemistry in soil environments.
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Affiliation(s)
- David C Karasz
- School of Integrative Plant Science, Bradfield Hall, Cornell University, Ithaca, New York, 14853, USA
| | - Anna I Weaver
- Department of Microbiology, Wing Hall, Cornell University, Ithaca, New York, 14853, USA.,Weill Institute for Cell and Molecular Biology, Weill Hall, Cornell University, Ithaca, New York, 14853, USA
| | - Daniel H Buckley
- School of Integrative Plant Science, Bradfield Hall, Cornell University, Ithaca, New York, 14853, USA
| | - Roland C Wilhelm
- School of Integrative Plant Science, Bradfield Hall, Cornell University, Ithaca, New York, 14853, USA
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12
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Controlled spatial organization of bacterial growth reveals key role of cell filamentation preceding Xylella fastidiosa biofilm formation. NPJ Biofilms Microbiomes 2021; 7:86. [PMID: 34876576 PMCID: PMC8651647 DOI: 10.1038/s41522-021-00258-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 11/11/2021] [Indexed: 12/21/2022] Open
Abstract
The morphological plasticity of bacteria to form filamentous cells commonly represents an adaptive strategy induced by stresses. In contrast, for diverse human and plant pathogens, filamentous cells have been recently observed during biofilm formation, but their functions and triggering mechanisms remain unclear. To experimentally identify the underlying function and hypothesized cell communication triggers of such cell morphogenesis, spatially controlled cell patterning is pivotal. Here, we demonstrate highly selective cell adhesion of the biofilm-forming phytopathogen Xylella fastidiosa to gold-patterned SiO2 substrates with well-defined geometries and dimensions. The consequent control of both cell density and distances between cell clusters demonstrated that filamentous cell formation depends on cell cluster density, and their ability to interconnect neighboring cell clusters is distance-dependent. This process allows the creation of large interconnected cell clusters that form the structural framework for macroscale biofilms. The addition of diffusible signaling molecules from supernatant extracts provides evidence that cell filamentation is induced by quorum sensing. These findings and our innovative platform could facilitate therapeutic developments targeting biofilm formation mechanisms of X. fastidiosa and other pathogens.
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13
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Moll L, Badosa E, Planas M, Feliu L, Montesinos E, Bonaterra A. Antimicrobial Peptides With Antibiofilm Activity Against Xylella fastidiosa. Front Microbiol 2021; 12:753874. [PMID: 34819923 PMCID: PMC8606745 DOI: 10.3389/fmicb.2021.753874] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 10/04/2021] [Indexed: 11/26/2022] Open
Abstract
Xylella fastidiosa is a plant pathogen that was recently introduced in Europe and is causing havoc to its agriculture. This Gram-negative bacterium invades the host xylem, multiplies, and forms biofilm occluding the vessels and killing its host. In spite of the great research effort, there is no method that effectively prevents or cures hosts from infections. The main control strategies up to now are eradication, vector control, and pathogen-free plant material. Antimicrobial peptides have arisen as promising candidates to combat this bacterium due to their broad spectrum of activity and low environmental impact. In this work, peptides previously reported in the literature and newly designed analogs were studied for its bactericidal and antibiofilm activity against X. fastidiosa. Also, their hemolytic activity and effect on tobacco leaves when infiltrated were determined. To assess the activity of peptides, the strain IVIA 5387.2 with moderate growth, able to produce biofilm and susceptible to antimicrobial peptides, was selected among six representative strains found in the Mediterranean area (DD1, CFBP 8173, Temecula, IVIA 5387.2, IVIA 5770, and IVIA 5901.2). Two interesting groups of peptides were identified with bactericidal and/or antibiofilm activity and low-moderate toxicity. The peptides 1036 and RIJK2 with dual (bactericidal–antibiofilm) activity against the pathogen and moderate toxicity stand out as the best candidates to control X. fastidiosa diseases. Nevertheless, peptides with only antibiofilm activity and low toxicity are also promising agents as they could prevent the occlusion of xylem vessels caused by the pathogen. The present work contributes to provide novel compounds with antimicrobial and antibiofilm activity that could lead to the development of new treatments against diseases caused by X. fastidiosa.
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Affiliation(s)
- Luís Moll
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, Girona, Spain
| | - Esther Badosa
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, Girona, Spain
| | - Marta Planas
- LIPPSO, Department of Chemistry, University of Girona, Girona, Spain
| | - Lidia Feliu
- LIPPSO, Department of Chemistry, University of Girona, Girona, Spain
| | - Emilio Montesinos
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, Girona, Spain
| | - Anna Bonaterra
- Laboratory of Plant Pathology, Institute of Food and Agricultural Technology-CIDSAV-XaRTA, University of Girona, Girona, Spain
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14
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Computational characterizations of GDP-mannose 4,6-dehydratase (NoeL) Rhizobial proteins. Curr Genet 2021; 67:769-784. [PMID: 33837815 DOI: 10.1007/s00294-021-01184-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/19/2021] [Accepted: 03/29/2021] [Indexed: 10/21/2022]
Abstract
A growing body of evidence suggests that Nod Factors molecules are the critical structural components in nitrogen fixation. These molecules have been implicated in plant-microbe signaling. Many enzymes involved in Nod factors biosynthesis; however, the enzymes that decorate (modify) nod factor main structure play a vital role. Here, the computational analysis of GDP-mannose 4,6-dehydratase (NoeL) proteins with great impact in modification of nod factor structure in four genomes of agriculturally important rhizobia (Bradyrhizobium, Mesorhizobium, Rhizobium, Sinorhizobium) presented. The NoeL number of amino acids was in the range of 147 (M5AMF5) to 372 (A0A023XWX0, Q89TZ1). The molecular weights were around 41 KDa. The results showed that the strain-specific purification strategy should apply as the pI of the sequences varied significantly (in the range of 5.59 to 9.12). The enzyme sequences and eight 3-dimensional structures predicted with homology modeling and machine learning representing the phylogenetic tree revealed the stability of enzymes in different conditions (Instability and Aliphatic index); however, this stability is also strain-specific. Disulphide bonds were observed in some species; however, the pattern was not detected in all members of the same species. Alpha helix was the dominant secondary structure predicted in all cytoplasmic NoeL. All models were homo-tetramer with acceptable sequence identity, GMEAN and coverage (60, - 1.80, 88, respectively). Additionally, Ramachandran maps showed that more than 94% of residues are in favored regions. We also highlight several key characterizations of NoeL from four rhizobia genomes annotation. These findings provide novel insights into the complexity and diversity of NoeL enzymes among important rhizobia and suggest considering a broader framework of biofilm for future research.
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15
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Shinde A, Illath K, Gupta P, Shinde P, Lim KT, Nagai M, Santra TS. A Review of Single-Cell Adhesion Force Kinetics and Applications. Cells 2021; 10:577. [PMID: 33808043 PMCID: PMC8000588 DOI: 10.3390/cells10030577] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 03/01/2021] [Accepted: 03/02/2021] [Indexed: 02/06/2023] Open
Abstract
Cells exert, sense, and respond to the different physical forces through diverse mechanisms and translating them into biochemical signals. The adhesion of cells is crucial in various developmental functions, such as to maintain tissue morphogenesis and homeostasis and activate critical signaling pathways regulating survival, migration, gene expression, and differentiation. More importantly, any mutations of adhesion receptors can lead to developmental disorders and diseases. Thus, it is essential to understand the regulation of cell adhesion during development and its contribution to various conditions with the help of quantitative methods. The techniques involved in offering different functionalities such as surface imaging to detect forces present at the cell-matrix and deliver quantitative parameters will help characterize the changes for various diseases. Here, we have briefly reviewed single-cell mechanical properties for mechanotransduction studies using standard and recently developed techniques. This is used to functionalize from the measurement of cellular deformability to the quantification of the interaction forces generated by a cell and exerted on its surroundings at single-cell with attachment and detachment events. The adhesive force measurement for single-cell microorganisms and single-molecules is emphasized as well. This focused review should be useful in laying out experiments which would bring the method to a broader range of research in the future.
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Affiliation(s)
- Ashwini Shinde
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India; (A.S.); (K.I.); (P.G.); (P.S.)
| | - Kavitha Illath
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India; (A.S.); (K.I.); (P.G.); (P.S.)
| | - Pallavi Gupta
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India; (A.S.); (K.I.); (P.G.); (P.S.)
| | - Pallavi Shinde
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India; (A.S.); (K.I.); (P.G.); (P.S.)
| | - Ki-Taek Lim
- Department of Biosystems Engineering, Kangwon National University, Chuncheon-Si, Gangwon-Do 24341, Korea;
| | - Moeto Nagai
- Department of Mechanical Engineering, Toyohashi University of Technology, 1-1 Hibarigaoka, Tempaku-cho, Toyohashi, Aichi 441-8580, Japan;
| | - Tuhin Subhra Santra
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600036, Tamil Nadu, India; (A.S.); (K.I.); (P.G.); (P.S.)
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16
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Monteiro MP, Hernandez-Montelongo J, Sahoo PK, Hernández Montelongo R, de Oliveira DS, Piazzeta MHO, García Sandoval JP, de Souza AA, Gobbi AL, Cotta MA. Functionalized microchannels as xylem-mimicking environment: Quantifying X. fastidiosa cell adhesion. Biophys J 2021; 120:1443-1453. [PMID: 33607085 DOI: 10.1016/j.bpj.2021.02.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 01/27/2021] [Accepted: 02/08/2021] [Indexed: 11/28/2022] Open
Abstract
Microchannels can be used to simulate xylem vessels and investigate phytopathogen colonization under controlled conditions. In this work, we explore surface functionalization strategies for polydimethylsiloxane and glass microchannels to study microenvironment colonization by Xylella fastidiosa subsp. pauca cells. We closely monitored cell initial adhesion, growth, and motility inside microfluidic channels as a function of chemical environments that mimic those found in xylem vessels. Carboxymethylcellulose (CMC), a synthetic cellulose, and an adhesin that is overexpressed during early stages of X. fastidiosa biofilm formation, XadA1 protein, were immobilized on the device's internal surfaces. This latter protocol increased bacterial density as compared with CMC. We quantitatively evaluated the different X. fastidiosa attachment affinities to each type of microchannel surface using a mathematical model and experimental observations acquired under constant flow of culture medium. We thus estimate that bacterial cells present ∼4 and 82% better adhesion rates in CMC- and XadA1-functionalized channels, respectively. Furthermore, variable flow experiments show that bacterial adhesion forces against shear stresses approximately doubled in value for the XadA1-functionalized microchannel as compared with the polydimethylsiloxane and glass pristine channels. These results show the viability of functionalized microchannels to mimic xylem vessels and corroborate the important role of chemical environments, and particularly XadA1 adhesin, for early stages of X. fastidiosa biofilm formation, as well as adhesivity modulation along the pathogen life cycle.
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Affiliation(s)
- Moniellen P Monteiro
- Departamento de Física Aplicada, Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, Campinas, São Paulo, Brasil.
| | - Jacobo Hernandez-Montelongo
- Departamento de Física Aplicada, Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, Campinas, São Paulo, Brasil.
| | - Prasana K Sahoo
- Departamento de Física Aplicada, Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, Campinas, São Paulo, Brasil
| | - Rosaura Hernández Montelongo
- Departamento de Electrónica, Centro Universitario de Ciencias Exactas e Ingenierías, Universidad de Guadalajara, Guadalajara, Jalisco, México
| | - Douglas S de Oliveira
- Campus Avançado de Jandaia do Sul, Universidade Federal do Paraná, Jandaia do Sul, Paraná, Brasil
| | - Maria H O Piazzeta
- Laboratório Nacional de Nanotecnologia, Centro Nacional de Pesquisa em Energia e Materiais/CNPEM, Campinas, São Paulo, Brasil
| | - Juan P García Sandoval
- Departamento de Ingeniería Química, Centro Universitario de Ciencias Exactas e Ingenierías, Universidad de Guadalajara, Guadalajara, Jalisco, México
| | - Alessandra A de Souza
- Instituto Agronômico de Campinas, Centro de Citricultura Sylvio Moreira, Cordeirópolis, São Paulo, Brasil
| | - Angelo L Gobbi
- Laboratório Nacional de Nanotecnologia, Centro Nacional de Pesquisa em Energia e Materiais/CNPEM, Campinas, São Paulo, Brasil
| | - Mônica A Cotta
- Departamento de Física Aplicada, Instituto de Física Gleb Wataghin, Universidade Estadual de Campinas, Campinas, São Paulo, Brasil.
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17
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Strieth D, Schwarz A, Stiefelmaier J, Erdmann N, Muffler K, Ulber R. New procedure for separation and analysis of the main components of cyanobacterial EPS. J Biotechnol 2021; 328:78-86. [PMID: 33484743 DOI: 10.1016/j.jbiotec.2021.01.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/08/2021] [Accepted: 01/09/2021] [Indexed: 11/25/2022]
Abstract
Phototrophic biofilms produce a matrix of extracellular polymeric substances (EPS), which holds the cells together and functions inter alia as nutrient storage and protection layer. EPS mainly consist of water, polysaccharides, proteins, lipids and nucleic acids as well as lysis and hydrolysis products which makes the composition very complex. Thus, rough simplifications are used and commonly one or at most two components of the EPS are examined. In this work a new procedure for separation and analysis of EPS in the main components (i) polysaccharides, (ii) proteins and (iii) lipids is presented with recovery rates of nearly 100 %. The method was established with synthetic EPS, which based on the composition of real EPS described in literature. Afterwards, the method was transferred to real EPS samples allowing a deeper insight in the composition of EPS from only one sample. The composition of EPS-extracts from Nostoc spec, cultivated under heterotrophic and mixotrophic batch and fed-batch conditions, was analysed during a cultivation period of 14 days. It was observed that mixotrophic cultivation led to higher amounts of carbohydrates, lipids and proteins than heterotrophic cultivation respectively, regardless of batch or fed-batch culture. While the amount of proteins in the EPS increased during the cultivation period, carbohydrates and lipids were dominant in the beginning and decreased afterwards.
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Affiliation(s)
- Dorina Strieth
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany.
| | - Anna Schwarz
- University of Applied Sciences Bingen, Department of Life Sciences and Engineering, 55411, Bingen am Rhein, Germany
| | - Judith Stiefelmaier
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
| | - Niklas Erdmann
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
| | - Kai Muffler
- University of Applied Sciences Bingen, Department of Life Sciences and Engineering, 55411, Bingen am Rhein, Germany
| | - Roland Ulber
- Technical University of Kaiserslautern, Chair of Bioprocess Engineering, Gottlieb-Daimler-Str. 49, 67663, Kaiserslautern, Germany
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18
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Phenotypic Characterization and Transformation Attempts Reveal Peculiar Traits of Xylella fastidiosa Subspecies pauca Strain De Donno. Microorganisms 2020; 8:microorganisms8111832. [PMID: 33233703 PMCID: PMC7699976 DOI: 10.3390/microorganisms8111832] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 11/17/2020] [Accepted: 11/18/2020] [Indexed: 12/19/2022] Open
Abstract
Xylella fastidiosa subsp. pauca strain De Donno has been recently identified as the causal agent of a severe disease affecting olive trees in a wide area of the Apulia Region (Italy). While insights on the genetics and epidemiology of this virulent strain have been gained, its phenotypic and biological traits remained to be explored. We investigated in vitro behavior of the strain and compare its relevant biological features (growth rate, biofilm formation, cell-cell aggregation, and twitching motility) with those of the type strain Temecula1. The experiments clearly showed that the strain De Donno did not show fringe on the agar plates, produced larger amounts of biofilm and had a more aggregative behavior than the strain Temecula1. Repeated attempts to transform, by natural competence, the strain De Donno failed to produce a GFP-expressing and a knockout mutant for the rpfF gene. Computational prediction allowed us to identify potentially deleterious sequence variations most likely affecting the natural competence and the lack of fringe formation. GFP and rpfF- mutants were successfully obtained by co-electroporation in the presence of an inhibitor of the type I restriction-modification system. The availability of De Donno mutant strains will open for new explorations of its interactions with hosts and insect vectors.
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19
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Stiefelmaier J, Strieth D, Di Nonno S, Erdmann N, Muffler K, Ulber R. Characterization of terrestrial phototrophic biofilms of cyanobacterial species. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101996] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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20
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Two-terminal DC mode measurements for sensing of growth phases of multi-species microbial population in nutrient broth. SENSING AND BIO-SENSING RESEARCH 2020. [DOI: 10.1016/j.sbsr.2020.100349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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21
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Quantum Leap from Gold and Silver to Aluminum Nanoplasmonics for Enhanced Biomedical Applications. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10124210] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Nanotechnology has been used in many biosensing and medical applications, in the form of noble metal (gold and silver) nanoparticles and nanostructured substrates. However, the translational clinical and industrial applications still need improvements of the efficiency, selectivity, cost, toxicity, reproducibility, and morphological control at the nanoscale level. In this review, we highlight the recent progress that has been made in the replacement of expensive gold and silver metals with the less expensive aluminum. In addition to low cost, other advantages of the aluminum plasmonic nanostructures include a broad spectral range from deep UV to near IR, providing additional signal enhancement and treatment mechanisms. New synergistic treatments of bacterial infections, cancer, and coronaviruses are envisioned. Coupling with gain media and quantum optical effects improve the performance of the aluminum nanostructures beyond gold and silver.
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22
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Alonso VPP, Harada AMM, Kabuki DY. Competitive and/or Cooperative Interactions of Listeria monocytogenes With Bacillus cereus in Dual-Species Biofilm Formation. Front Microbiol 2020; 11:177. [PMID: 32184763 PMCID: PMC7058548 DOI: 10.3389/fmicb.2020.00177] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 01/24/2020] [Indexed: 12/12/2022] Open
Abstract
Microorganisms in dairy industries can form monospecies, dual-species, or multispecies biofilms, showing cooperative or competitive behaviors, which might contribute to the reduction of efficiency of cleaning and sanitization processes and eventually turn into a potential source of contamination. This study proposes to evaluate the behavior of Listeria monocytogenes in monospecies biofilms, cocultured with Bacillus cereus. The isolates were of dairy origin, and the selection occurred after studies of competition among species. The biofilm formations on AISI 304 stainless steel at 25°C in a stationary culture were analyzed to observe the cooperative or competitive interactions among species, as well as the effect of pre-adhered cells. Biofilm formation assays were performed in four experiments: Experiment 1: in the presence of strains of antagonistic substance producer B. cereus (+); Experiment 2: extract of the antagonistic substance of B. cereus; Experiment 3: pre-adhered cells of B. cereus; and Experiment 4: pre-adhered cells of L. monocytogenes. Subsequently, cooperative behavior was observed by scanning electron microscopy. The L. monocytogenes monospecies biofilm counts of greater than 5 log colony-forming units (CFU)/cm2 were also observed in dual-species biofilms in the presence of B. cereus (non-producers of antagonist substance), showing cooperative behavior between species. However, in the presence of antagonistic substance produced by B. cereus, the counts were lower, 1.39 and 1.70 log CFU/cm2 (p > 0.05), indicating that the antagonistic substance contributes to competitive interactions. These data are relevant for the development of new studies to control L. monocytogenes in the dairy industry.
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Affiliation(s)
| | | | - Dirce Yorika Kabuki
- Department of Food Science, Faculty of Food Engineering, University of Campinas, Campinas, Brazil
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23
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Cattò C, De Vincenti L, Cappitelli F, D’Attoma G, Saponari M, Villa F, Forlani F. Non-Lethal Effects of N-Acetylcysteine on Xylella fastidiosa Strain De Donno Biofilm Formation and Detachment. Microorganisms 2019; 7:E656. [PMID: 31817370 PMCID: PMC6955915 DOI: 10.3390/microorganisms7120656] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 11/28/2019] [Accepted: 12/03/2019] [Indexed: 01/03/2023] Open
Abstract
This study investigated in-vitro the non-lethal effects of N-acetylcysteine (NAC) on Xylella fastidiosa subspecies pauca strain De Donno (Xf-DD) biofilm. This strain was isolated from the olive trees affected by the olive quick decline syndrome in southern Italy. Xf-DD was first exposed to non-lethal concentrations of NAC from 0.05 to 1000 µM. Cell surface adhesion was dramatically reduced at 500 µM NAC (-47%), hence, this concentration was selected for investigating the effects of pre-, post- and co-treatments on biofilm physiology and structural development, oxidative homeostasis, and biofilm detachment. Even though 500 µM NAC reduced bacterial attachment to surfaces, compared to the control samples, it promoted Xf-DD biofilm formation by increasing: (i) biofilm biomass by up to 78% in the co-treatment, (ii) matrix polysaccharides production by up to 72% in the pre-treatment, and (iii) reactive oxygen species levels by 3.5-fold in the co-treatment. Xf-DD biofilm detachment without and with NAC was also investigated. The NAC treatment did not increase biofilm detachment, compared to the control samples. All these findings suggested that, at 500 µM, NAC diversified the phenotypes in Xf-DD biofilm, promoting biofilm formation (hyper-biofilm-forming phenotype) and discouraging biofilm detachment (hyper-attachment phenotype), while increasing oxidative stress level in the biofilm.
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Affiliation(s)
- Cristina Cattò
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy; (C.C.); (L.D.V.); (F.C.); (F.F.)
| | - Luca De Vincenti
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy; (C.C.); (L.D.V.); (F.C.); (F.F.)
| | - Francesca Cappitelli
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy; (C.C.); (L.D.V.); (F.C.); (F.F.)
| | - Giusy D’Attoma
- Institute for Sustainable Plant Protection, Consiglio Nazionale delle Ricerche, via Amendola 165/A, 70126 Bari, Italy (M.S.)
| | - Maria Saponari
- Institute for Sustainable Plant Protection, Consiglio Nazionale delle Ricerche, via Amendola 165/A, 70126 Bari, Italy (M.S.)
| | - Federica Villa
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy; (C.C.); (L.D.V.); (F.C.); (F.F.)
| | - Fabio Forlani
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy; (C.C.); (L.D.V.); (F.C.); (F.F.)
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24
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Liu XY, Guo S, Ramoji A, Bocklitz T, Rösch P, Popp J, Yu HQ. Spatiotemporal Organization of Biofilm Matrix Revealed by Confocal Raman Mapping Integrated with Non-negative Matrix Factorization Analysis. Anal Chem 2019; 92:707-715. [DOI: 10.1021/acs.analchem.9b02593] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Xiao-Yang Liu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Applied Chemistry, University of Science and Technology of China, Hefei 230026, China
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- InfectoGnostics Research Campus Jena, Philosophenweg 7, D-07743 Jena, Germany
| | - Shuxia Guo
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance “Leibniz Health Technologies”, Albert-Einstein-Strasse 9, D-07745 Jena, Germany
| | - Anuradha Ramoji
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- Center for Sepsis Control and Care (CSCC), Jena University Hospital, Am Klinikum 1, D-07743 Jena, Germany
- Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance “Leibniz Health Technologies”, Albert-Einstein-Strasse 9, D-07745 Jena, Germany
| | - Thomas Bocklitz
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance “Leibniz Health Technologies”, Albert-Einstein-Strasse 9, D-07745 Jena, Germany
| | - Petra Rösch
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- InfectoGnostics Research Campus Jena, Philosophenweg 7, D-07743 Jena, Germany
| | - Jürgen Popp
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, D-07743 Jena, Germany
- InfectoGnostics Research Campus Jena, Philosophenweg 7, D-07743 Jena, Germany
- Center for Sepsis Control and Care (CSCC), Jena University Hospital, Am Klinikum 1, D-07743 Jena, Germany
- Leibniz Institute of Photonic Technology Jena - Member of the Research Alliance “Leibniz Health Technologies”, Albert-Einstein-Strasse 9, D-07745 Jena, Germany
| | - Han-Qing Yu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Applied Chemistry, University of Science and Technology of China, Hefei 230026, China
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Chen P, Wang JJ, Hong B, Tan L, Yan J, Zhang Z, Liu H, Pan Y, Zhao Y. Characterization of Mixed-Species Biofilm Formed by Vibrio parahaemolyticus and Listeria monocytogenes. Front Microbiol 2019; 10:2543. [PMID: 31787947 PMCID: PMC6856058 DOI: 10.3389/fmicb.2019.02543] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 10/21/2019] [Indexed: 12/15/2022] Open
Abstract
Mixed-species biofilms are the predominant form of biofilms found in nature. Research on biofilms have typically concentrated on single species biofilms and this study expands the horizon of biofilm research, where the characterization and dynamic changes of mono and mixed-species biofilms formed by the pathogens, Vibrio parahaemolyticus and Listeria monocytogenes were investigated. Compared to mono-species biofilm, the biomass, bio-volume, and thickness of mixed-species biofilms were significantly lower, which were confirmed using crystal violet staining, confocal laser scanning microscopy and scanning electron microscopy. Further experimental analysis showed these variations might result from the reduction of bacterial numbers, the down-regulation of biofilm-regulated genes and loss of metabolic activity in mixed-species biofilm. In addition, V. parahaemolyticus was located primarily on the surface layers of the mixed-species biofilms thus accruing competitive advantage. This competitive advantage was evidenced in a higher V. parahaemolyticus population density in the mixed-species biofilms. The adhesion to surfaces of the mixed-species biofilms were also reduced due to lower concentrations of extracellular polysaccharide and protein when the structure of the mixed-species was examined using Raman spectral analysis, phenol-sulfuric acid method and Lowry method. Furthermore, the minimum biofilm inhibitory concentration to antibiotics obviously decreased when V. parahaemolyticus co-exited with L. monocytogenes. This study firstly elucidated the interactive behavior in biofilm development of two foodborne pathogens, and future studies for biofilm control and antibiotic therapy should take into account interactions in mixed-species biofilms.
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Affiliation(s)
- Ping Chen
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Jing Jing Wang
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Shanghai Engineering Research Center of Aquatic Product Processing and Preservation, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), Ministry of Agriculture and Rural Affairs, Shanghai, China
| | - Bin Hong
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Ling Tan
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Jun Yan
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Shanghai Engineering Research Center of Aquatic Product Processing and Preservation, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), Ministry of Agriculture and Rural Affairs, Shanghai, China
| | - Zhaohuan Zhang
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Haiquan Liu
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Shanghai Engineering Research Center of Aquatic Product Processing and Preservation, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), Ministry of Agriculture and Rural Affairs, Shanghai, China
- Engineering Research Center of Food Thermal-Processing Technology, Shanghai Ocean University, Shanghai, China
| | - Yingjie Pan
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Shanghai Engineering Research Center of Aquatic Product Processing and Preservation, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), Ministry of Agriculture and Rural Affairs, Shanghai, China
| | - Yong Zhao
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Shanghai Engineering Research Center of Aquatic Product Processing and Preservation, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation (Shanghai), Ministry of Agriculture and Rural Affairs, Shanghai, China
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Cui Z, Yang CH, Kharadi RR, Yuan X, Sundin GW, Triplett LR, Wang J, Zeng Q. Cell-length heterogeneity: a population-level solution to growth/virulence trade-offs in the plant pathogen Dickeya dadantii. PLoS Pathog 2019; 15:e1007703. [PMID: 31381590 PMCID: PMC6695200 DOI: 10.1371/journal.ppat.1007703] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 08/15/2019] [Accepted: 06/30/2019] [Indexed: 12/19/2022] Open
Abstract
Necrotrophic plant pathogens acquire nutrients from dead plant cells, which requires the disintegration of the plant cell wall and tissue structures by the pathogen. Infected plants lose tissue integrity and functional immunity as a result, exposing the nutrient rich, decayed tissues to the environment. One challenge for the necrotrophs to successfully cause secondary infection (infection spread from an initially infected plant to the nearby uninfected plants) is to effectively utilize nutrients released from hosts towards building up a large population before other saprophytes come. In this study, we observed that the necrotrophic pathogen Dickeya dadantii exhibited heterogeneity in bacterial cell length in an isogenic population during infection of potato tuber. While some cells were regular rod-shape (<10μm), the rest elongated into filamentous cells (>10μm). Short cells tended to occur at the interface of healthy and diseased tissues, during the early stage of infection when active attacking and killing is occurring, while filamentous cells tended to form at a later stage of infection. Short cells expressed all necessary virulence factors and motility, whereas filamentous cells did not engage in virulence, were non-mobile and more sensitive to environmental stress. However, compared to the short cells, the filamentous cells displayed upregulated metabolic genes and increased growth, which may benefit the pathogens to build up a large population necessary for the secondary infection. The segregation of the two subpopulations was dependent on differential production of the alarmone guanosine tetraphosphate (ppGpp). When exposed to fresh tuber tissues or freestanding water, filamentous cells quickly transformed to short virulent cells. The pathogen adaptation of cell length heterogeneity identified in this study presents a model for how some necrotrophs balance virulence and vegetative growth to maximize fitness during infection. Virulence and vegetative growth are two distinct lifestyles in pathogenic bacteria. Although virulence factors are critical for pathogens to successfully cause infections, producing these factors is costly and imposes growth penalty to the pathogen. Although each single bacterial cell exists in one lifestyle or the other at any moment, we demonstrated in this study that a bacterial population could accomplish the two functions simultaneously by maintaining subpopulations of cells in each of the two lifestyles. During the invasion of potato tuber, the soft rot pathogen Dickeya dadantii formed two distinct subpopulations characterized by their cell morphology. The population consisting of short cells actively produced virulence factors to break down host tissues, whereas the other population, consisting of filamentous cells, was only engaged in vegetative growth and was non-virulent. We hypothesize that this phenotypic heterogeneity allows D. dadantii to break down plant tissues and release nutrients, while efficiently utilizing nutrients needed to build up a large pathogen population at the same time. Our study provides insights into how phenotypic heterogeneity could grant bacteria abilities to “multi-task” distinct functions as a population.
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Affiliation(s)
- Zhouqi Cui
- Department of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, United States of America
| | - Ching-Hong Yang
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, United States of America
| | - Roshni R. Kharadi
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, United States of America
| | - Xiaochen Yuan
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, United States of America
| | - George W. Sundin
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, United States of America
| | - Lindsay R. Triplett
- Department of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, United States of America
| | - Jie Wang
- Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America
| | - Quan Zeng
- Department of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, United States of America
- * E-mail:
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Cattò C, Cappitelli F. Testing Anti-Biofilm Polymeric Surfaces: Where to Start? Int J Mol Sci 2019; 20:E3794. [PMID: 31382580 PMCID: PMC6696330 DOI: 10.3390/ijms20153794] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 08/02/2019] [Indexed: 12/11/2022] Open
Abstract
Present day awareness of biofilm colonization on polymeric surfaces has prompted the scientific community to develop an ever-increasing number of new materials with anti-biofilm features. However, compared to the large amount of work put into discovering potent biofilm inhibitors, only a small number of papers deal with their validation, a critical step in the translation of research into practical applications. This is due to the lack of standardized testing methods and/or of well-controlled in vivo studies that show biofilm prevention on polymeric surfaces; furthermore, there has been little correlation with the reduced incidence of material deterioration. Here an overview of the most common methods for studying biofilms and for testing the anti-biofilm properties of new surfaces is provided.
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Affiliation(s)
- Cristina Cattò
- Department of Food Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy
| | - Francesca Cappitelli
- Department of Food Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy.
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Roper C, Castro C, Ingel B. Xylella fastidiosa: bacterial parasitism with hallmarks of commensalism. CURRENT OPINION IN PLANT BIOLOGY 2019; 50:140-147. [PMID: 31229798 DOI: 10.1016/j.pbi.2019.05.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2019] [Revised: 05/17/2019] [Accepted: 05/20/2019] [Indexed: 06/09/2023]
Abstract
All organisms evolve in the presence of other organisms and these intimate associations are major drivers of evolution. Broadly speaking, these interactions are considered symbioses and can take on a full range of positive, negative or seemingly neutral interactions. Just two examples of these symbiotic interactions are parasitism and commensalism. Parasitism results in one partner benefitting while one partner suffers adverse consequences. Commensalism is a form of symbiosis where one partner benefits and the other partner is neutrally affected. Research efforts are more often focused on understanding parasitic symbioses related to disease, hence, much research is performed on identifying virulence factors to understand the fundamentals of pathogenesis. In turn, much less is understood about the fundamentals of commensal relationships. Here, we will take an introspective look at the plant-associated bacterium, Xylella fastidiosa. In some of its many plant hosts, this bacterium participates in seemingly commensal relationships while in other hosts, it causes devastating diseases that result in epidemics, making it a good model for exploring the determinants of where bacteria fall on the spectrum of parasitic and commensal relationships from both the microbial and the plant host perspective. Recent discoveries in how pathogenic X. fastidiosa imposes self-limiting behaviors upon itself indicate that even in its parasitic form, X. fastidiosa displays hallmarks of a commensal lifestyle. Understanding how commensalism can 'go wrong' and manifest into pathologies in specific hosts is a useful vantage point from which to study the determinants of virulence and pathogenicity.
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Affiliation(s)
- Caroline Roper
- Department of Microbiology and Plant Pathology, University of California, Riverside, 900 University Avenue, Riverside, CA 92521, United States.
| | - Claudia Castro
- Department of Microbiology and Plant Pathology, University of California, Riverside, 900 University Avenue, Riverside, CA 92521, United States
| | - Brian Ingel
- Department of Microbiology and Plant Pathology, University of California, Riverside, 900 University Avenue, Riverside, CA 92521, United States
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29
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Deliorman M, Duatepe FPG, Davenport EK, Fransson BA, Call DR, Beyenal H, Abu-Lail NI. Responses of Acinetobacter baumannii Bound and Loose Extracellular Polymeric Substances to Hyperosmotic Agents Combined with or without Tobramycin: An Atomic Force Microscopy Study. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:9071-9083. [PMID: 31184900 PMCID: PMC7607972 DOI: 10.1021/acs.langmuir.9b01227] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
In this work, contributions of extracellular polymeric substances (EPS) to the nanoscale mechanisms through which the multidrug-resistant Acinetobacter baumannii responds to antimicrobial and hyperosmotic treatments were investigated by atomic force microscopy. Specifically, the adhesion strengths to a control surface of silicon nitride (Si3N4) and the lengths of bacterial surface biopolymers of bound and loose EPS extracted from A. baumannii biofilms were quantified after individual or synergistic treatments with hyperosmotic agents (NaCl and maltodextrin) and an antibiotic (tobramycin). In the absence of any treatment, the loose EPS were significantly longer in length and higher in adhesion to Si3N4 than the bound EPS. When used individually, the hyperosmotic agents and tobramycin collapsed the A. baumannii bound and loose EPS. The combined treatment of maltodextrin with tobramycin collapsed only the loose EPS and did not alter the adhesion of both bound and loose EPS to Si3N4. In addition, the combined treatment was not as effective in collapsing the EPS molecules as when tobramycin was applied alone. Finally, the effects of treatments were dose-dependent. Altogether, our findings suggest that a sequential treatment could be effective in treating A. baumannii biofilms, in which a hyperosmotic agent is used first to collapse the EPS and limit the diffusion of nutrients into the biofilm, followed by the use of an antibiotic to kill the bacterial cells that escape from the biofilm because of starvation.
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Affiliation(s)
- Muhammedin Deliorman
- Division of Engineering, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | | | - Emily K. Davenport
- Gene and Linda Voiland School of Chemical Engineering and Bioengineering, Washington State University, 99164 Pullman, Washington, United States
| | - Boel A. Fransson
- Department of Veterinary Clinical Sciences, Washington State University, 99164 Pullman, Washington, United States
| | - Douglas R. Call
- Paul G. Allen School for Global Animal Health, Washington State University, 99164 Pullman, Washington, United States
| | - Haluk Beyenal
- Gene and Linda Voiland School of Chemical Engineering and Bioengineering, Washington State University, 99164 Pullman, Washington, United States
| | - Nehal I. Abu-Lail
- Department of Biomedical Engineering, University of Texas at San Antonio, 78249 San Antonio, Texas, United States
- Corresponding Author:. Phone: +1 210 458 8131
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30
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Impact of metabolite accumulation on the structure, viability and development of succinic acid–producing biofilms of Actinobacillus succinogenes. Appl Microbiol Biotechnol 2019; 103:6205-6215. [DOI: 10.1007/s00253-019-09888-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 04/30/2019] [Accepted: 05/03/2019] [Indexed: 10/26/2022]
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31
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Circular pellicles formed by Pseudomonas alkylphenolica KL28 are a sophisticated architecture principally designed by matrix substance. J Microbiol 2018; 56:790-797. [PMID: 30353464 DOI: 10.1007/s12275-018-8252-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2018] [Revised: 07/23/2018] [Accepted: 07/26/2018] [Indexed: 10/28/2022]
Abstract
The colonization of liquid surfaces as floating biofilms or pellicles is a bacterial adaptation to optimally occupy the airliquid (A-L) niche. In aerobic heterotrophs, pellicle formation is beneficial for the utilization of O2 and nonpolar organic compounds. Pseudomonas alkylphenolica KL28, an alkylphenol degrader, forms flat circular pellicles that are 0.3-0.5 mm in diameter. In this study, we first monitored the pellicle developmental patterns of multicellular organization from the initial settlement stage. The pellicles developed by clonal growth and mutants for flagella and pilus formation established normal pellicles. In contrast, the mutants of an epm gene cluster for biosynthesis of alginate-like polymer were incompetent in cell alignment for initial two-dimensional (2D) pellicle growth, suggesting the role of the Epm polymer as a structural scaffold for pellicle biofilms. Microscopic observation revealed that the initial 2D growth transited to multilayers by an accumulated self-produced extracellular polymeric substance that may exert a constraint force. Electron microscopy and confocal laser scanning microscopy revealed that the fully matured pellicle structures were densly packed with matrix-encased cells displaying distinct arrangements. The cells on the surface of the pellicle were relatively flat, and those inside were longitudinally cross-packed. The extracellular polysaccharide stained by Congo red was denser on the pellicle rim and a thin film was observed in the open spaces, indicative of its role in pellicle flotation. Our results demonstrate that P. alkylphenolica KL28 coordinately dictates the cell arrangements of pellicle biofilms by the controlled growth of constituent cells that accumulate extracellular polymeric substances.
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32
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Chandraserkharan Meenu P, Sreelekshmy BR, Basheer R, Sadasivan SM, Vijayakumari Ramakrishnan RM, Shibli SMA. Development of a High-Performance Mediatorless Microbial Fuel Cell Comprising a Catalytic Steel Anode. ACS APPLIED BIO MATERIALS 2018; 1:1124-1133. [DOI: 10.1021/acsabm.8b00337] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
| | | | - Rubina Basheer
- Department of Biotechnology, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala 695 581, India
| | - Suma Malini Sadasivan
- Department of Chemistry, University of Kerala, Thiruvananthapuram, Kerala 695 581, India
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33
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Aggarwal M, Hussaini MY, De La Fuente L, Navarrete F, Cogan NG. A framework for model analysis across multiple experiment regimes: Investigating effects of zinc on Xylella fastidiosa as a case study. J Theor Biol 2018; 457:88-100. [PMID: 30138631 DOI: 10.1016/j.jtbi.2018.08.028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Revised: 07/14/2018] [Accepted: 08/18/2018] [Indexed: 12/13/2022]
Abstract
Mathematical models are ubiquitous in analyzing dynamical biological systems. However, it might not be possible to explicitly account for the various sources of uncertainties in the model and the data if there is limited experimental data and information about the biological processes. The presence of uncertainty introduces problems with identifiability of the parameters of the model and determining appropriate regions to explore with respect to sensitivity and estimates of parameter values. Since the model analysis is likely dependent on the numerical estimates of the parameters, parameter identifiability should be addressed beforehand to capture biologically relevant parameter space. Here, we propose a framework which uses data from different experiment regimes to identify a region in the parameter space over which subsequent mathematical analysis can be conducted. Along with building confidence in the parameter estimates, it provides us with variations in the parameters due to changes in the experimental conditions. To determine significance of these variations, we conduct global sensitivity analysis, allowing us to make testable hypothesis for effects of changes in the experimental conditions on the biological system. As a case study, we develop a model for growth dynamics and biofilm formation of a bacterial plant pathogen, and use our framework to identify possible effects of zinc on the bacterial populations in different metabolic states. The framework reveals underlying issues with parameter identifiability and identifies a suitable region in the parameter space, sensitivity analysis over which informs us about the parameters that might be affected by addition of zinc. Moreover, these parameters prove to be identifiable in this region.
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Affiliation(s)
- Manu Aggarwal
- Department of Mathematics, Florida State University, Tallahassee, Florida, USA.
| | - M Y Hussaini
- Department of Mathematics, Florida State University, Tallahassee, Florida, USA
| | - Leonardo De La Fuente
- Department of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, USA
| | - Fernando Navarrete
- Department of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, USA
| | - N G Cogan
- Department of Mathematics, Florida State University, Tallahassee, Florida, USA
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34
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Tan L, Zhao F, Han Q, Zhao A, Malakar PK, Liu H, Pan Y, Zhao Y. High Correlation Between Structure Development and Chemical Variation During Biofilm Formation by Vibrio parahaemolyticus. Front Microbiol 2018; 9:1881. [PMID: 30154782 PMCID: PMC6102384 DOI: 10.3389/fmicb.2018.01881] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Accepted: 07/26/2018] [Indexed: 01/10/2023] Open
Abstract
The complex three-dimensional structure of biofilms is supported by extracellular polymeric substances (EPSs) and additional insight on chemical variations in EPS and biofilm structure development will inform strategies for control of biofilms. Vibrio parahaemolyticus VPS36 biofilm development was studied using confocal laser scanning microscopy (CLSM) and Raman spectroscopy (RM). The structural parameters of the biofilm (biovolume, mean thickness, and porosity) were characterized by CLSM and the results showed that VPS36 biofilm formed dense structures after 48 h incubation. There were concurrent variations in carbohydrates and nucleic acids contents in the EPS as evidenced by RM. The Raman intensities of the chemical component in EPS, measured using Pearson's correlation coefficient, were positively correlated with biovolume and mean thickness, and negatively correlated with porosity. The Raman intensity for carbohydrates correlated closely with mean thickness (p-value < 0.01) and the Raman intensity for nucleic acid correlated closely with porosity (p-value < 0.01). Additional evidence for these correlations were confirmed using scanning electron microscopic (SEM) and crystal violet staining.
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Affiliation(s)
- Ling Tan
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Fei Zhao
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Qiao Han
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Aijing Zhao
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Pradeep K. Malakar
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
| | - Haiquan Liu
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation, Ministry of Agriculture, Shanghai, China
- Shanghai Engineering Research Center of Aquatic-Product Processing and Preservation, Shanghai, China
- Engineering Research Center of Food Thermal-Processing Technology, Shanghai Ocean University, Shanghai, China
| | - Yingjie Pan
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation, Ministry of Agriculture, Shanghai, China
- Shanghai Engineering Research Center of Aquatic-Product Processing and Preservation, Shanghai, China
| | - Yong Zhao
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, China
- Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage and Preservation, Ministry of Agriculture, Shanghai, China
- Shanghai Engineering Research Center of Aquatic-Product Processing and Preservation, Shanghai, China
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35
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Conrad JC, Poling-Skutvik R. Confined Flow: Consequences and Implications for Bacteria and Biofilms. Annu Rev Chem Biomol Eng 2018; 9:175-200. [DOI: 10.1146/annurev-chembioeng-060817-084006] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Bacteria overwhelmingly live in geometrically confined habitats that feature small pores or cavities, narrow channels, or nearby interfaces. Fluid flows through these confined habitats are ubiquitous in both natural and artificial environments colonized by bacteria. Moreover, these flows occur on time and length scales comparable to those associated with motility of bacteria and with the formation and growth of biofilms, which are surface-associated communities that house the vast majority of bacteria to protect them from host and environmental stresses. This review describes the emerging understanding of how flow near surfaces and within channels and pores alters physical processes that control how bacteria disperse, attach to surfaces, and form biofilms. This understanding will inform the development and deployment of technologies for drug delivery, water treatment, and antifouling coatings and guide the structuring of bacterial consortia for production of chemicals and pharmaceuticals.
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Affiliation(s)
- Jacinta C. Conrad
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas 77204, USA
| | - Ryan Poling-Skutvik
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas 77204, USA
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36
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Mokwatlo SC, Nicol W. Structure and cell viability analysis of Actinobacillus succinogenes biofilms as biocatalysts for succinic acid production. Biochem Eng J 2017. [DOI: 10.1016/j.bej.2017.09.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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37
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Stiffness signatures along early stages of Xylella fastidiosa biofilm formation. Colloids Surf B Biointerfaces 2017; 159:174-182. [DOI: 10.1016/j.colsurfb.2017.07.075] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 07/19/2017] [Accepted: 07/26/2017] [Indexed: 01/05/2023]
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38
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Chatterjee M, D'Morris S, Paul V, Warrier S, Vasudevan AK, Vanuopadath M, Nair SS, Paul-Prasanth B, Mohan CG, Biswas R. Mechanistic understanding of Phenyllactic acid mediated inhibition of quorum sensing and biofilm development in Pseudomonas aeruginosa. Appl Microbiol Biotechnol 2017; 101:8223-8236. [PMID: 28983655 DOI: 10.1007/s00253-017-8546-4] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 09/14/2017] [Accepted: 09/18/2017] [Indexed: 11/30/2022]
Abstract
Pseudomonas aeruginosa depends on its quorum sensing (QS) system for its virulence factors' production and biofilm formation. Biofilms of P. aeruginosa on the surface of indwelling catheters are often resistant to antibiotic therapy. Alternative approaches that employ QS inhibitors alone or in combination with antibiotics are being developed to tackle P. aeruginosa infections. Here, we have studied the mechanism of action of 3-Phenyllactic acid (PLA), a QS inhibitory compound produced by Lactobacillus species, against P. aeruginosa PAO1. Our study revealed that PLA inhibited the expression of virulence factors such as pyocyanin, protease, and rhamnolipids that are involved in the biofilm formation of P. aeruginosa PAO1. Swarming motility, another important criterion for biofilm formation of P. aeruginosa PAO1, was also inhibited by PLA. Gene expression, mass spectrometric, functional complementation assays, and in silico data indicated that the quorum quenching and biofilm inhibitory activities of PLA are attributed to its ability to interact with P. aeruginosa QS receptors. PLA antagonistically binds to QS receptors RhlR and PqsR with a higher affinity than its cognate ligands N-butyryl-L-homoserine lactone (C4-HSL) and 2-heptyl-3,4-dihydroxyquinoline (PQS; Pseudomonas quinolone signal). Using an in vivo intraperitoneal catheter-associated medaka fish infection model, we proved that PLA inhibited the initial attachment of P. aeruginosa PAO1 on implanted catheter tubes. Our in vitro and in vivo results revealed the potential of PLA as anti-biofilm compound against P. aeruginosa.
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Affiliation(s)
- Maitrayee Chatterjee
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - Sharon D'Morris
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - Vinod Paul
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - Sruthi Warrier
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - Anil Kumar Vasudevan
- Department of Microbiology, Amrita Institute of Medical Sciences and Research Centre, Amrita University, Cochin, Kerala, 682041, India
| | | | | | - Bindhu Paul-Prasanth
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - C Gopi Mohan
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India
| | - Raja Biswas
- Centre for Nanosciences and Molecular Medicine, Amrita University, Cochin, Kerala, 682041, India.
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39
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Tiwari V, Tiwari D, Patel V, Tiwari M. Effect of secondary metabolite of Actinidia deliciosa on the biofilm and extra-cellular matrix components of Acinetobacter baumannii. Microb Pathog 2017; 110:345-351. [DOI: 10.1016/j.micpath.2017.07.013] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Revised: 06/20/2017] [Accepted: 07/10/2017] [Indexed: 12/31/2022]
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40
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Sjollema J, van der Mei HC, Hall CL, Peterson BW, de Vries J, Song L, Jong EDD, Busscher HJ, Swartjes JJTM. Detachment and successive re-attachment of multiple, reversibly-binding tethers result in irreversible bacterial adhesion to surfaces. Sci Rep 2017; 7:4369. [PMID: 28663565 PMCID: PMC5491521 DOI: 10.1038/s41598-017-04703-8] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 05/08/2017] [Indexed: 01/15/2023] Open
Abstract
Bacterial adhesion to surfaces occurs ubiquitously and is initially reversible, though becoming more irreversible within minutes after first contact with a surface. We here demonstrate for eight bacterial strains comprising four species, that bacteria adhere irreversibly to surfaces through multiple, reversibly-binding tethers that detach and successively re-attach, but not collectively detach to cause detachment of an entire bacterium. Arguments build on combining analyses of confined Brownian-motion of bacteria adhering to glass and their AFM force-distance curves and include the following observations: (1) force-distance curves showed detachment events indicative of multiple binding tethers, (2) vibration amplitudes of adhering bacteria parallel to a surface decreased with increasing adhesion-forces acting perpendicular to the surface, (3) nanoscopic displacements of bacteria with relatively long autocorrelation times up to several seconds, in absence of microscopic displacement, (4) increases in Mean-Squared-Displacement over prolonged time periods according to tα with 0 < α ≪ 1, indicative of confined displacement. Analysis of simulated position-maps of adhering particles using a new, in silico model confirmed that adhesion to surfaces is irreversible through detachment and successive re-attachment of reversibly-binding tethers. This makes bacterial adhesion mechanistically comparable with the irreversible adsorption of high-molecular-weight proteins to surfaces, mediated by multiple, reversibly-binding molecular segments.
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Affiliation(s)
- Jelmer Sjollema
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Henny C van der Mei
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
| | - Connie L Hall
- Department of Biomedical Engineering, The College of New Jersey, Armstong Hall, Room 181, P. O. Box 7718, The College of New Jersey, Ewing, NJ, 08628, USA
| | - Brandon W Peterson
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Joop de Vries
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Lei Song
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Ed D de Jong
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Henk J Busscher
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Jan J T M Swartjes
- University of Groningen and University Medical Center Groningen, Department of Biomedical Engineering, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands
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41
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Mattana S, Alunni Cardinali M, Caponi S, Casagrande Pierantoni D, Corte L, Roscini L, Cardinali G, Fioretto D. High-contrast Brillouin and Raman micro-spectroscopy for simultaneous mechanical and chemical investigation of microbial biofilms. Biophys Chem 2017; 229:123-129. [PMID: 28684254 DOI: 10.1016/j.bpc.2017.06.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Revised: 06/21/2017] [Accepted: 06/21/2017] [Indexed: 12/18/2022]
Abstract
Mechanical mapping with chemical specificity of biological samples is now made possible by joint micro-Brillouin and micro-Raman measurements. In this work, thanks to the unprecedented contrast of a new tandem Fabry-Perot interferometer, we demonstrate simultaneous detection of Brillouin and Raman spectra from different Candida biofilms. Our proof-of-concept study reveals the potential of this label-free joint micro-spectroscopy technique in challenging microbiological issues. In particular, heterogeneous chemo-mechanical maps of Candida biofilms are obtained, without the need for staining or touching the sample. The correlative Raman and Brillouin investigation evidences the role of both extracellular polymeric substances and of hydration water in inducing a marked local softening of the biofilm.
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Affiliation(s)
- S Mattana
- Dipartimento di Fisica e Geologia, Università di Perugia, Via Pascoli, I-06123 Perugia, Italy.
| | - M Alunni Cardinali
- Dipartimento di Fisica e Geologia, Università di Perugia, Via Pascoli, I-06123 Perugia, Italy
| | - S Caponi
- IOM-CNR c/o Dipartimento di Fisica e Geologia, Università di Perugia, Via Pascoli, I-06123 Perugia, Italy
| | - D Casagrande Pierantoni
- Department of Pharmaceutical Sciences-Microbiology, University of Perugia, Borgo 20 Giugno 74, 06121 Perugia, Italy
| | - L Corte
- Department of Pharmaceutical Sciences-Microbiology, University of Perugia, Borgo 20 Giugno 74, 06121 Perugia, Italy
| | - L Roscini
- Department of Pharmaceutical Sciences-Microbiology, University of Perugia, Borgo 20 Giugno 74, 06121 Perugia, Italy
| | - G Cardinali
- Department of Pharmaceutical Sciences-Microbiology, University of Perugia, Borgo 20 Giugno 74, 06121 Perugia, Italy; CEMIN, Centre of Excellence on Nanostructured Innovative Materials, University of Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
| | - D Fioretto
- Dipartimento di Fisica e Geologia, Università di Perugia, Via Pascoli, I-06123 Perugia, Italy; CEMIN, Centre of Excellence on Nanostructured Innovative Materials, University of Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
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42
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“Living” dynamics of filamentous bacteria on an adherent surface under hydrodynamic exposure. Biointerphases 2017; 12:02C410. [DOI: 10.1116/1.4983150] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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43
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Velmourougane K, Prasanna R, Singh SB, Kumar R, Saha S. Sequence of inoculation influences the nature of extracellular polymeric substances and biofilm formation in Azotobacter chroococcum and Trichoderma viride. FEMS Microbiol Ecol 2017; 93:3814244. [DOI: 10.1093/femsec/fix066] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Accepted: 05/10/2017] [Indexed: 11/13/2022] Open
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44
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Velmourougane K, Prasanna R, Saxena AK. Agriculturally important microbial biofilms: Present status and future prospects. J Basic Microbiol 2017; 57:548-573. [PMID: 28407275 DOI: 10.1002/jobm.201700046] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Revised: 03/17/2017] [Accepted: 03/19/2017] [Indexed: 11/07/2022]
Abstract
Microbial biofilms are a fascinating subject, due to their significant roles in the environment, industry, and health. Advances in biochemical and molecular techniques have helped in enhancing our understanding of biofilm structure and development. In the past, research on biofilms primarily focussed on health and industrial sectors; however, lately, biofilms in agriculture are gaining attention due to their immense potential in crop production, protection, and improvement. Biofilms play an important role in colonization of surfaces - soil, roots, or shoots of plants and enable proliferation in the desired niche, besides enhancing soil fertility. Although reports are available on microbial biofilms in general; scanty information is published on biofilm formation by agriculturally important microorganisms (bacteria, fungi, bacterial-fungal) and their interactions in the ecosystem. Better understanding of agriculturally important bacterial-fungal communities and their interactions can have several implications on climate change, soil quality, plant nutrition, plant protection, bioremediation, etc. Understanding the factors and genes involved in biofilm formation will help to develop more effective strategies for sustainable and environment-friendly agriculture. The present review brings together fundamental aspects of biofilms, in relation to their formation, regulatory mechanisms, genes involved, and their application in different fields, with special emphasis on agriculturally important microbial biofilms.
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Affiliation(s)
| | - Radha Prasanna
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Anil Kumar Saxena
- ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau Nath Bhanjan, Uttar Pradesh, India
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45
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Raman microspectroscopy, surface-enhanced Raman scattering microspectroscopy, and stable-isotope Raman microspectroscopy for biofilm characterization. Anal Bioanal Chem 2017; 409:4353-4375. [DOI: 10.1007/s00216-017-0303-0] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Revised: 01/31/2017] [Accepted: 03/08/2017] [Indexed: 12/27/2022]
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46
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Khoerunnisa, Mazrad ZA, In I, Park SY. pH-switchable bacteria detection using zwitterionic fluorescent polymer. Biosens Bioelectron 2017; 90:394-402. [DOI: 10.1016/j.bios.2016.12.013] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Revised: 12/02/2016] [Accepted: 12/06/2016] [Indexed: 12/31/2022]
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47
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Hernandez-Montelongo J, Lucchesi E, Nascimento V, França C, Gonzalez I, Macedo W, Machado D, Lancellotti M, Moraes A, Beppu M, Cotta M. Antibacterial and non-cytotoxic ultra-thin polyethylenimine film. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2017; 71:718-724. [DOI: 10.1016/j.msec.2016.10.064] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2016] [Revised: 09/28/2016] [Accepted: 10/24/2016] [Indexed: 10/20/2022]
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48
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Influence of Nutrient Availability and Quorum Sensing on the Formation of Metabolically Inactive Microcolonies Within Structurally Heterogeneous Bacterial Biofilms: An Individual-Based 3D Cellular Automata Model. Bull Math Biol 2017; 79:594-618. [PMID: 28127665 DOI: 10.1007/s11538-017-0246-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 01/13/2017] [Indexed: 10/20/2022]
Abstract
The resistance of bacterial biofilms to antibiotic treatment has been attributed to the emergence of structurally heterogeneous microenvironments containing metabolically inactive cell populations. In this study, we use a three-dimensional individual-based cellular automata model to investigate the influence of nutrient availability and quorum sensing on microbial heterogeneity in growing biofilms. Mature biofilms exhibited at least three structurally distinct strata: a high-volume, homogeneous region sandwiched between two compact sections of high heterogeneity. Cell death occurred preferentially in layers in close proximity to the substratum, resulting in increased heterogeneity in this section of the biofilm; the thickness and heterogeneity of this lowermost layer increased with time, ultimately leading to sloughing. The model predicted the formation of metabolically dormant cellular microniches embedded within faster-growing cell clusters. Biofilms utilizing quorum sensing were more heterogeneous compared to their non-quorum sensing counterparts, and resisted sloughing, featuring a cell-devoid layer of EPS atop the substratum upon which the remainder of the biofilm developed. Overall, our study provides a computational framework to analyze metabolic diversity and heterogeneity of biofilm-associated microorganisms and may pave the way toward gaining further insights into the biophysical mechanisms of antibiotic resistance.
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49
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Dragoš A, Kovács ÁT. The Peculiar Functions of the Bacterial Extracellular Matrix. Trends Microbiol 2017; 25:257-266. [PMID: 28089324 DOI: 10.1016/j.tim.2016.12.010] [Citation(s) in RCA: 129] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Revised: 12/02/2016] [Accepted: 12/15/2016] [Indexed: 11/26/2022]
Abstract
A biofilm is a common life form where bacterial cells crowd together surrounded by an extracellular matrix (ECM). Traditionally, the ECM is considered as a structural material that glues and shields the biofilm cells. Here we describe alternative functions of the ECM, highlighting how it benefits microbes beyond the biofilms. Next to protecting free-living cells, the ECM participates in signaling, migration, and genetic exchange either being freely shared with other species or being exclusive to siblings. Considering the structural and recently discovered functions of the ECM, we also attempt to revise its role in sociomicrobiology. In the light of recent findings, the canonical view on ECM as a passive structural material of biofilms should be revisited.
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Affiliation(s)
- Anna Dragoš
- Terrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Neugasse 23, 07743 Jena, Germany
| | - Ákos T Kovács
- Terrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Neugasse 23, 07743 Jena, Germany.
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50
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Mendes JS, Santiago AS, Toledo MAS, Horta MAC, de Souza AA, Tasic L, de Souza AP. In vitro Determination of Extracellular Proteins from Xylella fastidiosa. Front Microbiol 2016; 7:2090. [PMID: 28082960 PMCID: PMC5183587 DOI: 10.3389/fmicb.2016.02090] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 12/09/2016] [Indexed: 12/20/2022] Open
Abstract
The phytopathogen Xylella fastidiosa causes economic losses in important agricultural crops. Xylem vessel occlusion caused by biofilm formation is the major mechanism underlying the pathogenicity of distinct strains of X. fastidiosa. Here, we provide a detailed in vitro characterization of the extracellular proteins of X. fastidiosa. Based on the results, we performed a comparison with a strain J1a12, which cannot induce citrus variegated chlorosis symptoms when inoculated into citrus plants. We then extend this approach to analyze the extracellular proteins of X. fastidiosa in media supplemented with calcium. We verified increases in extracellular proteins concomitant with the days of growth and, consequently, biofilm development (3-30 days). Outer membrane vesicles carrying toxins were identified beginning at 10 days of growth in the 9a5c strain. In addition, a decrease in extracellular proteins in media supplemented with calcium was observed in both strains. Using mass spectrometry, 71 different proteins were identified during 30 days of X. fastidiosa biofilm development, including proteases, quorum-sensing proteins, biofilm formation proteins, hypothetical proteins, phage-related proteins, chaperones, toxins, antitoxins, and extracellular vesicle membrane components.
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Affiliation(s)
- Juliano S. Mendes
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de CampinasCampinas, Brazil
| | - André S. Santiago
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de CampinasCampinas, Brazil
| | - Marcelo A. S. Toledo
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de CampinasCampinas, Brazil
| | - Maria A. C. Horta
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de CampinasCampinas, Brazil
| | | | - Ljubica Tasic
- Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de CampinasCampinas, Brazil
| | - Anete P. de Souza
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de CampinasCampinas, Brazil
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de CampinasCampinas, Brazil
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