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Lin Z, Li F, Krug PJ, Schmidt EW. The polyketide to fatty acid transition in the evolution of animal lipid metabolism. Nat Commun 2024; 15:236. [PMID: 38172109 PMCID: PMC10764717 DOI: 10.1038/s41467-023-44497-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 12/15/2023] [Indexed: 01/05/2024] Open
Abstract
Animals synthesize simple lipids using a distinct fatty acid synthase (FAS) related to the type I polyketide synthase (PKS) enzymes that produce complex specialized metabolites. The evolutionary origin of the animal FAS and its relationship to the diversity of PKSs remain unclear despite the critical role of lipid synthesis in cellular metabolism. Recently, an animal FAS-like PKS (AFPK) was identified in sacoglossan molluscs. Here, we explore the phylogenetic distribution of AFPKs and other PKS and FAS enzymes across the tree of life. We found AFPKs widely distributed in arthropods and molluscs (>6300 newly described AFPK sequences). The AFPKs form a clade with the animal FAS, providing an evolutionary link bridging the type I PKSs and the animal FAS. We found molluscan AFPK diversification correlated with shell loss, suggesting AFPKs provide a chemical defense. Arthropods have few or no PKSs, but our results indicate AFPKs contributed to their ecological and evolutionary success by facilitating branched hydrocarbon and pheromone biosynthesis. Although animal metabolism is well studied, surprising new metabolic enzyme classes such as AFPKs await discovery.
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Affiliation(s)
- Zhenjian Lin
- Department of Medicinal Chemistry, University of Utah, Salt Lake City, UT, 84112, USA
| | - Feng Li
- Department of Medicinal Chemistry, University of Utah, Salt Lake City, UT, 84112, USA
| | - Patrick J Krug
- Department of Biological Sciences, California State University, Los Angeles, CA, 90032, USA
| | - Eric W Schmidt
- Department of Medicinal Chemistry, University of Utah, Salt Lake City, UT, 84112, USA.
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2
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Ferrari M, Hautmann M. Gastropods underwent a major taxonomic turnover during the end-Triassic marine mass extinction event. PLoS One 2022; 17:e0276329. [PMID: 36322518 PMCID: PMC9629647 DOI: 10.1371/journal.pone.0276329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 10/04/2022] [Indexed: 01/24/2023] Open
Abstract
Based on an exhaustive database of gastropod genera and subgenera during the Triassic-Jurassic transition, origination and extinction percentages and resulting diversity changes are calculated, with a particular focus on the end-Triassic mass extinction event. We show that gastropods suffered a loss of 56% of genera and subgenera during this event, which was higher than the average of marine life (46.8%). Among molluscs, gastropods were more strongly affected than bivalves (43.4%) but less than ammonoids, which were nearly annihilated. However, there were also pronounced differences among gastropod subclasses. The most strongly affected subclass was the Neritimorphia, which lost 72.7% of their Rhaetian genera; on the other extreme, the Heterobranchia remained nearly unaffected (11% loss). We analysed this extinction pattern with respect to larval development, palaeobiogeography, shell size, and anatomy and found that putative feeding of the pelagic larval stage, adaptation to tropical-temperate water temperatures, and flexibility of the mantle attachment were among the factors that might explain extinction resilience of heterobranchs during the end-Triassic crisis. Among molluscs, extinction magnitude roughly correlates with locomotion activity and thus metabolic rates. We suggest three potential kill mechanisms that could account for these observations: global warming, ocean acidification, and extinction of marine plankton. The end-Triassic extinction of gastropods therefore fits to proposed extinction scenarios for this event, which invoke the magmatic activity of the Central Atlantic Magmatic Province as the ultimate cause of death. With respect to gastropods, the effect of the end-Triassic mass extinction was comparable to that of the end-Permian mass extinction. Notably, Heterobranchia was relatively little affected by both events; the extinction resilience of this subclass during times of global environmental changes was therefore possibly a key aspect of their subsequent evolutionary success.
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Affiliation(s)
- Mariel Ferrari
- Instituto Patagónico de Geología y Paleontología, IPGP (CCT CONICET-CENPAT), Puerto Madryn, Provincia de Chubut, Argentina
| | - Michael Hautmann
- Paläontologisches Institut und Museum, Universität Zürich, Zürich, Switzerland
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3
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Chen Z, Doğan Ö, Guiglielmoni N, Guichard A, Schrödl M. Pulmonate slug evolution is reflected in the de novo genome of Arion vulgaris Moquin-Tandon, 1855. Sci Rep 2022; 12:14226. [PMID: 35987814 PMCID: PMC9392753 DOI: 10.1038/s41598-022-18099-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Accepted: 08/05/2022] [Indexed: 11/09/2022] Open
Abstract
AbstractStylommatophoran pulmonate land slugs and snails successfully completed the water-to-land transition from an aquatic ancestor and flourished on land. Of the 30,000 estimated species, very few genomes have so far been published. Here, we assembled and characterized a chromosome-level genome of the “Spanish” slug, Arion vulgaris Moquin-Tandon, 1855, a notorious pest land slug in Europe. Using this reference genome, we conclude that a whole-genome duplication event occurred approximately 93–109 Mya at the base of Stylommatophora and might have promoted land invasion and adaptive radiation. Comparative genomic analyses reveal that genes related to the development of kidney, blood vessels, muscle, and nervous systems had expanded in the last common ancestor of land pulmonates, likely an evolutionary response to the terrestrial challenges of gravity and water loss. Analyses of A. vulgaris gene families and positively selected genes show the slug has evolved a stronger ability to counteract the greater threats of external damage, radiation, and water loss lacking a protective shell. Furthermore, a recent burst of long interspersed elements in the genome of A. vulgaris might affect gene regulation and contribute to rapid phenotype changes in A. vulgaris, which might be conducive to its rapid adaptation and invasiveness.
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4
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Mizukami I, Fourreau CJL, Matsuo S, Reimer JD. Diversity and distribution of air-breathing sea slug genus Peronia Fleming, 1822 (Gastropoda: Onchidiidae) in southern Japanese waters. PeerJ 2022; 10:e13720. [PMID: 35873908 PMCID: PMC9306565 DOI: 10.7717/peerj.13720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 06/22/2022] [Indexed: 01/21/2023] Open
Abstract
Species of the genus Peronia Fleming, 1822, are air-breathing onchidiid sea slugs that inhabit intertidal reef flats of temperate to tropical zones. In the Ryukyu Islands of southern subtropical Japan, Peronia species are a traditional food source for local people. To date, there have been three species recorded around Okinawajima Island; P. verruculata and P. peronii, along with recently described P. okinawensis, which was described as possibly endemic to Okinawajima Island. This study aimed to map the distribution ranges of these three Peronia species within the Ryukyu Islands using molecular analyses in order to understand the specific distribution of each species. Since Peronia species are generally indistinguishable by gross external morphology, a DNA barcoding approach was employed to identify specimens. The molecular data showed that there are four species present in the Ryukyu Islands. P. verruculata (unit #1 sensu Dayrat et al., 2020) was dominant at almost all locations, while P. peronii was present in much lower numbers than P. verruculata, but found across a relatively wide range in the Ryukyu Islands. We newly record P. okinawensis and P. setoensis from Amami Oshima Island and from several places around Okinawajima Island, and also identified high levels of genetic variation within P. setoensis. Peronia okinawensis and P. setoensis have been thought to be endemic to Okinawajima Island and to Honshu, mainland Japan, respectively. However, as both species were observed around Okinawajima and Amami Oshima islands, other islands of the Ryukyus are also likely to harbor these species, and their distribution ranges are wider than previously thought. Based on the results from molecular analyses, we provide general descriptions of each species. Sizes of specimens were consistently smaller for P. setoensis and relatively larger for P. peronii specimens. On the other hand, P. verruculata and P. okinawensis had similar size ranges, but P. okinawensis had comparatively much more distinct papillae. This study revealed that the Ryukyu Islands are the only region currently known with four sympatric Peronia species, and this work provides a basis for future research on these Peronia species throughout the northwest Pacific Ocean, representing the first step in more effective management of the local Peronia fisheries in the Ryukyu Islands.
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Affiliation(s)
- Iori Mizukami
- Molecular Invertebrate of Systematics and Ecology (MISE) Lab, Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - Chloé Julie Loïs Fourreau
- Molecular Invertebrate of Systematics and Ecology (MISE) Lab, Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - Sakine Matsuo
- Molecular Invertebrate of Systematics and Ecology (MISE) Lab, Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - James Davis Reimer
- Molecular Invertebrate of Systematics and Ecology (MISE) Lab, Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, Japan,Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan
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5
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Chen Z, Schrödl M. How many single-copy orthologous genes from whole genomes reveal deep gastropod relationships? PeerJ 2022; 10:e13285. [PMID: 35497189 PMCID: PMC9048639 DOI: 10.7717/peerj.13285] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 03/28/2022] [Indexed: 01/13/2023] Open
Abstract
The Gastropoda contains 80% of existing mollusks and is the most diverse animal class second only to the Insecta. However, the deep phylogeny of gastropods has been controversial for a long time. Especially the position of Patellogastropoda is a major uncertainty. Morphology and some mitochondria studies concluded that Patellogastropoda is likely to be sister to all other gastropods (Orthogastropoda hypothesis), while transcriptomic and other mitogenomic studies indicated that Patellogastropoda and Vetigastropoda are sister taxa (Psilogastropoda). With the release of high-quality genomes, orthologous genes can be better identified and serve as powerful candidates for phylogenetic analysis. The question is, given the current limitations on the taxon sampling side, how many markers are needed to provide robust results. Here, we identified single-copy orthologous genes (SOGs) from 14 gastropods species with whole genomes available which cover five main gastropod subclasses. We generated different datasets from 395 to 1610 SOGs by allowing species missing in different levels. We constructed gene trees of each SOG, and inferred species trees from different collections of gene trees. We found as the number of SOGs increased, the inferred topology changed from Patellogastropoda being sister to all other gastropods to Patellogastropoda being sister to Vetigastropoda + Neomphalina (Psilogastropoda s.l.), with considerable support. Our study thus rejects the Orthogastropoda concept showing that the selection of the representative species and use of sufficient informative sites greatly influence the analysis of deep gastropod phylogeny.
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Affiliation(s)
- Zeyuan Chen
- Mollusca, SNSB-Bavarian State Collection of Zoology, Munich, Bavaria, Germany,Department Biology II, Ludwig-Maximilians-Universität München, Munich, Bavaria, Germany
| | - Michael Schrödl
- Mollusca, SNSB-Bavarian State Collection of Zoology, Munich, Bavaria, Germany,Department Biology II, Ludwig-Maximilians-Universität München, Munich, Bavaria, Germany,GeoBio-Center LMU, Munich, Bavaria, Germany
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6
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Goto R, Takano T, Seike K, Yamashita M, Paulay G, Rodgers KS, Hunter CL, Tongkerd P, Sato S, Hong JS, Endo K. Stasis and diversity in living fossils: species delimitation and evolution of lingulid brachiopods. Mol Phylogenet Evol 2022; 175:107460. [DOI: 10.1016/j.ympev.2022.107460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 02/22/2022] [Accepted: 02/25/2022] [Indexed: 10/18/2022]
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The first phylogenetic and species delimitation study of the nudibranch genus Gymnodoris reveals high species diversity (Gastropoda: Nudibranchia). Mol Phylogenet Evol 2022; 171:107470. [DOI: 10.1016/j.ympev.2022.107470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 12/23/2021] [Accepted: 03/21/2022] [Indexed: 11/30/2022]
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8
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Chaban EM, Ekimova IA, Schepetov DM, Chernyshev AV. The new genus Aglaona: the first abyssal aglajid (Heterobranchia: Cephalaspidea: Aglajidae) with a description of two new species from the north-western Pacific Ocean. Zool J Linn Soc 2022. [DOI: 10.1093/zoolinnean/zlab115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
In this paper we describe the new genus Aglaona, the first abyssal genus of the family Aglajidae, comprising two new species: Aglaona rudmani sp. nov. from the Sea of Okhotsk (inhabiting a depth of 3206 m) and Aglaona valdesi sp. nov. from the Pacific slope of the Kuril Islands (at a depth of 3374–3580 m). For species descriptions and inference of relationships, we have followed an integrative approach, including molecular phylogenetic analyses based on four markers (COI, 16S, H3 and 28S) and a morphological analysis based on traditional anatomical dissections and scanning electron microscopy. The new genus is characterized by a well-developed radula with marginal teeth (2:1:0:1:2) and an internal bulloid shell with a wing-like parietal callus. External and internal morphology of Aglaonagen. nov. species is similar to that of the philinoid genus Laona (family Laonidae). Phylogenetic analyses support the inclusion of the new genus in the family Aglajidae, but its sister-relationships are unresolved. Our results suggest that Aglaonagen. nov. possesses several plesiomorphic characters, and that the reduction of shell and radula in Aglajidae occurred in parallel in different lineages.
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Affiliation(s)
- Elena M Chaban
- Zoological Institute, Russian Academy of Sciences, Universitetskaya emb. 1, St. Petersburg, Russia
| | - Irina A Ekimova
- Lomonosov Moscow State University, Leninskie gory 1-12, Moscow, Russia
| | | | - Alexei V Chernyshev
- A. V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia
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Ekimova I, Valdés Á, Stanovova M, Mikhlina A, Antokhina T, Neretina T, Chichvarkhina O, Schepetov D. Connected across the ocean: taxonomy and biogeography of deep-water Nudibranchia from the Northwest Pacific reveal trans-Pacific links and two undescribed species. ORG DIVERS EVOL 2021. [DOI: 10.1007/s13127-021-00526-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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10
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Schäfer GG, Grebe LJ, Schinkel R, Lieb B. The Evolution of Hemocyanin Genes in Caenogastropoda: Gene Duplications and Intron Accumulation in Highly Diverse Gastropods. J Mol Evol 2021; 89:639-655. [PMID: 34757470 PMCID: PMC8599328 DOI: 10.1007/s00239-021-10036-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 10/15/2021] [Indexed: 11/30/2022]
Abstract
Hemocyanin is the oxygen transport protein of most molluscs and represents an important physiological factor that has to be well-adapted to their environments because of the strong influences of abiotic factors on its oxygen affinity. Multiple independent gene duplications and intron gains have been reported for hemocyanin genes of Tectipleura (Heterobranchia) and the caenogastropod species Pomacea canaliculata, which contrast with the uniform gene architectures of hemocyanins in Vetigastropoda. The goal of this study was to analyze hemocyanin gene evolution within the diverse group of Caenogastropoda in more detail. Our findings reveal multiple gene duplications and intron gains and imply that these represent general features of Apogastropoda hemocyanins. Whereas hemocyanin exon–intron structures are identical within different Tectipleura lineages, they differ strongly within Caenogastropoda among phylogenetic groups as well as between paralogous hemocyanin genes of the same species. Thus, intron accumulation took place more gradually within Caenogastropoda but finally led to a similar consequence, namely, a multitude of introns. Since both phenomena occurred independently within Heterobranchia and Caenogastropoda, the results support the hypothesis that introns may contribute to adaptive radiation by offering new opportunities for genetic variability (multiple paralogs that may evolve differently) and regulation (multiple introns). Our study indicates that adaptation of hemocyanin genes may be one of several factors that contributed to the evolution of the large diversity of Apogastropoda. While questions remain, this hypothesis is presented as a starting point for the further study of hemocyanin genes and possible correlations between hemocyanin diversity and adaptive radiation.
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Affiliation(s)
- Gabriela Giannina Schäfer
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany
| | - Lukas Jörg Grebe
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany
| | - Robin Schinkel
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany
| | - Bernhard Lieb
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany.
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11
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Brenzinger B, Schrödl M, Kano Y. Origin and significance of two pairs of head tentacles in the radiation of euthyneuran sea slugs and land snails. Sci Rep 2021; 11:21016. [PMID: 34697382 PMCID: PMC8545979 DOI: 10.1038/s41598-021-99172-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 08/31/2021] [Indexed: 11/09/2022] Open
Abstract
The gastropod infraclass Euthyneura comprises at least 30,000 species of snails and slugs, including nudibranch sea slugs, sea hares and garden snails, that flourish in various environments on earth. A unique morphological feature of Euthyneura is the presence of two pairs of sensory head tentacles with different shapes and functions: the anterior labial tentacles and the posterior rhinophores or eyestalks. Here we combine molecular phylogenetic and microanatomical evidence that suggests the two pairs of head tentacles have originated by splitting of the original single tentacle pair (with two parallel nerve cords in each tentacle) as seen in many other gastropods. Minute deep-sea snails of Tjaernoeia and Parvaplustrum, which in our phylogeny belonged to the euthyneurans’ sister group (new infraclass Mesoneura), have tentacles that are split along much of their lengths but associated nerves and epidermal sense organs are not as specialized as in Euthyneura. We suggest that further elaboration of cephalic sense organs in Euthyneura closely coincided with their ecological radiation and drastic modification of body plans. The monotypic family Parvaplustridae nov., superfamily Tjaernoeioidea nov. (Tjaernoeiidae + Parvaplustridae), and new major clade Tetratentaculata nov. (Mesoneura nov. + Euthyneura) are also proposed based on their phylogenetic relationships and shared morphological traits.
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Affiliation(s)
- Bastian Brenzinger
- SNSB-Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, Munich, Germany. .,Department of Marine Ecosystems Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8564, Japan.
| | - Michael Schrödl
- SNSB-Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, Munich, Germany.,Department Biology II, BioZentrum, Ludwig-Maximilians-Universität, Großhadernerstr. 2, 82152, Planegg-Martinsried, Germany.,SNSB-Bavarian State Collection of Paleontology and Geology, GeoBioCenter LMU, Richard-Wagner-Str. 10, 80333, Munich, Germany
| | - Yasunori Kano
- Department of Marine Ecosystems Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8564, Japan.
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12
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Ramos-Silva P, Wall-Palmer D, Marlétaz F, Marin F, Peijnenburg KTCA. Evolution and biomineralization of pteropod shells. J Struct Biol 2021; 213:107779. [PMID: 34474158 DOI: 10.1016/j.jsb.2021.107779] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 08/06/2021] [Accepted: 08/08/2021] [Indexed: 01/19/2023]
Abstract
Shelled pteropods, known as sea butterflies, are a group of small gastropods that spend their entire lives swimming and drifting in the open ocean. They build thin shells of aragonite, a metastable polymorph of calcium carbonate. Pteropod shells have been shown to experience dissolution and reduced thickness with a decrease in pH and therefore represent valuable bioindicators to monitor the impacts of ocean acidification. Over the past decades, several studies have highlighted the striking diversity of shell microstructures in pteropods, with exceptional mechanical properties, but their evolution and future in acidified waters remains uncertain. Here, we revisit the body-of-work on pteropod biomineralization, focusing on shell microstructures and their evolution. The evolutionary history of pteropods was recently resolved, and thus it is timely to examine their shell microstructures in such context. We analyse new images of shells from fossils and recent species providing a comprehensive overview of their structural diversity. Pteropod shells are made of the crossed lamellar and prismatic microstructures common in molluscs, but also of curved nanofibers which are proposed to form a helical three-dimensional structure. Our analyses suggest that the curved fibres emerged before the split between coiled and uncoiled pteropods and that they form incomplete to multiple helical turns. The curved fibres are seen as an important trait in the adaptation to a planktonic lifestyle, giving maximum strength and flexibility to the pteropod thin and lightweight shells. Finally, we also elucidate on the candidate biomineralization genes underpinning the shell diversity in these important indicators of ocean health.
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Affiliation(s)
- Paula Ramos-Silva
- Plankton Diversity and Evolution, Naturalis Biodiversity Center, the Netherlands.
| | - Deborah Wall-Palmer
- Plankton Diversity and Evolution, Naturalis Biodiversity Center, the Netherlands
| | - Ferdinand Marlétaz
- Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, United Kingdom
| | - Frédéric Marin
- University of Burgundy-Franche-Comté, Laboratoire Biogéosciences UMR CNRS 6282, France
| | - Katja T C A Peijnenburg
- Plankton Diversity and Evolution, Naturalis Biodiversity Center, the Netherlands; Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, the Netherlands
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13
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Schäfer GG, Pedrini-Martha V, Jackson DJ, Dallinger R, Lieb B. The evolution of hemocyanin genes in Tectipleura: a multitude of conserved introns in highly diverse gastropods. BMC Ecol Evol 2021; 21:36. [PMID: 33663373 PMCID: PMC7931591 DOI: 10.1186/s12862-021-01763-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 02/08/2021] [Indexed: 02/07/2023] Open
Abstract
Background Hemocyanin is the oxygen transporter of most molluscs. Since the oxygen affinity of hemocyanin is strongly temperature-dependent, this essential protein needs to be well-adapted to the environment. In Tectipleura, a very diverse group of gastropods with > 27,000 species living in all kinds of habitats, several hemocyanin genes have already been analyzed. Multiple independent duplications of this gene have been identified and may represent potential adaptations to different environments and lifestyles. The aim of this study is to further explore the evolution of these genes by analyzing their exon–intron architectures. Results We have reconstructed the gene architectures of ten hemocyanin genes from four Tectipleura species: Aplysia californica, Lymnaea stagnalis, Cornu aspersum and Helix pomatia. Their hemocyanin genes each contain 53 introns, significantly more than in the hemocyanin genes of Cephalopoda (9–11), Vetigastropoda (15) and Caenogastropoda (28–33). The gene structures of Tectipleura hemocyanins are identical in terms of intron number and location, with the exception of one out of two hemocyanin genes of L. stagnalis that comprises one additional intron. We found that gene structures that differ between molluscan lineages most probably evolved more recently through independent intron gains. Conclusions The strict conservation of the large number of introns in Tectipleura hemocyanin genes over 200 million years suggests the influence of a selective pressure on this gene structure. While we could not identify conserved sequence motifs within these introns, it may be simply the great number of introns that offers increased possibilities of gene regulation relative to hemocyanin genes with less introns and thus may have facilitated habitat shifts and speciation events. This hypothesis is supported by the relatively high number of introns within the hemocyanin genes of Pomacea canaliculata that has evolved independently of the Tectipleura. Pomacea canaliculata belongs to the Caenogastropoda, the sister group of Heterobranchia (that encompass Tectipleura) which is also very diverse and comprises species living in different habitats. Our findings provide a hint to some of the molecular mechanisms that may have supported the spectacular radiation of one of Metazoa’s most species rich groups.
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Affiliation(s)
- Gabriela Giannina Schäfer
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany.
| | - Veronika Pedrini-Martha
- Institute of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria
| | - Daniel John Jackson
- Department of Geobiology, Georg-August-University of Göttingen, Goldschmidtstr. 3, 37077, Göttingen, Germany
| | - Reinhard Dallinger
- Institute of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria
| | - Bernhard Lieb
- Institute of Molecular Physiology, Johannes Gutenberg-University of Mainz, Johann-Joachim-Becher-Weg 7, 55128, Mainz, Germany
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14
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Varney RM, Brenzinger B, Malaquias MAE, Meyer CP, Schrödl M, Kocot KM. Assessment of mitochondrial genomes for heterobranch gastropod phylogenetics. BMC Ecol Evol 2021; 21:6. [PMID: 33514315 PMCID: PMC7853304 DOI: 10.1186/s12862-020-01728-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 11/26/2020] [Indexed: 01/07/2023] Open
Abstract
Background Heterobranchia is a diverse clade of marine, freshwater, and terrestrial gastropod molluscs. It includes such disparate taxa as nudibranchs, sea hares, bubble snails, pulmonate land snails and slugs, and a number of (mostly small-bodied) poorly known snails and slugs collectively referred to as the “lower heterobranchs”. Evolutionary relationships within Heterobranchia have been challenging to resolve and the group has been subject to frequent and significant taxonomic revision. Mitochondrial (mt) genomes can be a useful molecular marker for phylogenetics but, to date, sequences have been available for only a relatively small subset of Heterobranchia. Results To assess the utility of mitochondrial genomes for resolving evolutionary relationships within this clade, eleven new mt genomes were sequenced including representatives of several groups of “lower heterobranchs”. Maximum likelihood analyses of concatenated matrices of the thirteen protein coding genes found weak support for most higher-level relationships even after several taxa with extremely high rates of evolution were excluded. Bayesian inference with the CAT + GTR model resulted in a reconstruction that is much more consistent with the current understanding of heterobranch phylogeny. Notably, this analysis recovered Valvatoidea and Orbitestelloidea in a polytomy with a clade including all other heterobranchs, highlighting these taxa as important to understanding early heterobranch evolution. Also, dramatic gene rearrangements were detected within and between multiple clades. However, a single gene order is conserved across the majority of heterobranch clades. Conclusions Analysis of mitochondrial genomes in a Bayesian framework with the site heterogeneous CAT + GTR model resulted in a topology largely consistent with the current understanding of heterobranch phylogeny. However, mitochondrial genomes appear to be too variable to serve as good phylogenetic markers for robustly resolving a number of deeper splits within this clade.
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Affiliation(s)
- Rebecca M Varney
- Department of Biological Sciences, The University of Alabama, Campus Box 870344, Tuscaloosa, AL, 35487, USA
| | - Bastian Brenzinger
- SNSB-Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, München, Germany
| | | | - Christopher P Meyer
- National Museum of Natural History, Smithsonian Institution, 10th St. & Constitution Ave. NW, Washington, D.C., 20560, USA
| | - Michael Schrödl
- SNSB-Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, München, Germany.,BioGeoCenter LMU (Ludwig Maximillion University Munich), University of Munich, Biozentrum, Großhaderner Str. 2, 82152, Planegg-Martinsried, Germany
| | - Kevin M Kocot
- Department of Biological Sciences, The University of Alabama, Campus Box 870344, Tuscaloosa, AL, 35487, USA. .,Alabama Museum of Natural History, Campus Box 870344, Tuscaloosa, AL, 35487, USA.
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15
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Knutson VL, Brenzinger B, Schrödl M, Wilson NG, Giribet G. Most Cephalaspidea have a shell, but transcriptomes can provide them with a backbone (Gastropoda: Heterobranchia). Mol Phylogenet Evol 2020; 153:106943. [DOI: 10.1016/j.ympev.2020.106943] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 08/21/2020] [Indexed: 01/14/2023]
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16
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Moles J, Giribet G. A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia). Mol Phylogenet Evol 2020; 155:106996. [PMID: 33148425 DOI: 10.1016/j.ympev.2020.106996] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 10/20/2020] [Accepted: 10/20/2020] [Indexed: 10/23/2022]
Abstract
Molluscs are the second most diverse animal phylum and heterobranch gastropods present ~ 44,000 species. These comprise fascinating creatures with huge morphological and ecological disparity. Such great diversity comes with even larger phylogenetic uncertainty and many taxa have been largely neglected in molecular assessments. Genomic tools have provided resolution to deep cladogenic events but generating large numbers of transcriptomes/genomes is expensive and usually requires fresh material. Here we leverage a target enrichment approach to design and synthesize a probe set based on available genomes and transcriptomes across Heterobranchia. Our probe set contains 57,606 70mer baits and targets a total of 2,259 ultra-conserved elements (UCEs). Post-sequencing capture efficiency was tested against 31 marine heterobranchs from major groups, including Acochlidia, Acteonoidea, Aplysiida, Cephalaspidea, Pleurobranchida, Pteropoda, Runcinida, Sacoglossa, and Umbraculida. The combined Trinity and Velvet assemblies recovered up to 2,211 UCEs in Tectipleura, up to 1,978 in Nudipleura, and up to 1,927 in Acteonoidea, the latter two being the most distantly related taxa to our core study group. Total alignment length was 525,599 bp and contained 52% informative sites and 21% missing data. Maximum-likelihood and Bayesian inference approaches recovered the monophyly of all orders tested as well as the larger clades Nudipleura, Panpulmonata, and Euopisthobranchia. The successful enrichment of diversely preserved material and DNA concentrations demonstrate the polyvalent nature of UCEs, and the universality of the probe set designed. We believe this probe set will enable multiple, interesting lines of research, that will benefit from an inexpensive and largely informative tool that will, additionally, benefit from the access to museum collections to gather genomic data.
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Affiliation(s)
- Juan Moles
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.
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17
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Doğan Ö, Schrödl M, Chen Z. The complete mitogenome of Arion vulgaris Moquin-Tandon, 1855 (Gastropoda: Stylommatophora): mitochondrial genome architecture, evolution and phylogenetic considerations within Stylommatophora. PeerJ 2020; 8:e8603. [PMID: 32117634 PMCID: PMC7039129 DOI: 10.7717/peerj.8603] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 01/19/2020] [Indexed: 11/27/2022] Open
Abstract
Stylommatophora is one of the most speciose orders of Gastropoda, including terrestrial snails and slugs, some of which are economically important as human food, agricultural pests, vectors of parasites or due to invasiveness. Despite their great diversity and relevance, the internal phylogeny of Stylommatophora has been debated. To date, only 34 stylommatophoran mitogenomes were sequenced. Here, the complete mitogenome of an invasive pest slug, Arion vulgaris Moquin-Tandon, 1855 (Stylommatophora: Arionidae), was sequenced using next generation sequencing, analysed and compared with other stylommatophorans. The mitogenome of A. vulgaris measures 14,547 bp and contains 13 protein-coding, two rRNA, 22 tRNA genes, and one control region, with an A + T content of 70.20%. All protein coding genes (PCGs) are initiated with ATN codons except for COX1, ND5 and ATP8 and all are ended with TAR or T-stop codons. All tRNAs were folded into a clover-leaf secondary structure except for trnC and trnS1 (AGN). Phylogenetic analyses confirmed the position of A. vulgaris within the superfamily Arionoidea, recovered a sister group relationship between Arionoidea and Orthalicoidea, and supported monophyly of all currently recognized superfamilies within Stylommatophora except for the superfamily Helicoidea. Initial diversification time of the Stylommatophora was estimated as 138.55 million years ago corresponding to Early Cretaceous. The divergence time of A. vulgaris and Arion rufus (Linnaeus, 1758) was estimated as 15.24 million years ago corresponding to one of Earth's most recent, global warming events, the Mid-Miocene Climatic Optimum. Furthermore, selection analyses were performed to investigate the role of different selective forces shaping stylommatophoran mitogenomes. Although purifying selection is the predominant selective force shaping stylommatophoran mitogenomes, six genes (ATP8, COX1, COX3, ND3, ND4 and ND6) detected by the branch-specific aBSREL approach and three genes (ATP8, CYTB and ND4L) detected by codon-based BEB, FUBAR and MEME approaches were exposed to diversifying selection. The positively selected substitutions at the mitochondrial PCGs of stylommatophoran species seems to be adaptive to environmental conditions and affecting mitochondrial ATP production or protection from reactive oxygen species effects. Comparative analysis of stylommatophoran mitogenome rearrangements using MLGO revealed conservatism in Stylommatophora; exceptions refer to potential apomorphies for several clades including rearranged orders of trnW-trnY and of trnE-trnQ-rrnS-trnM-trnL2-ATP8-trnN-ATP6-trnR clusters for the genus Arion. Generally, tRNA genes tend to be rearranged and tandem duplication random loss, transitions and inversions are the most basic mechanisms shaping stylommatophoran mitogenomes.
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Affiliation(s)
- Özgül Doğan
- Department of Molecular Biology and Genetics, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
- SNSB-Bavarian State Collection of Zoology, Munich, Germany
| | - Michael Schrödl
- SNSB-Bavarian State Collection of Zoology, Munich, Germany
- Department Biology II, Ludwig-Maximilians-Universität, Munich, Germany
- GeoBio-Center LMU, Munich, Germany
| | - Zeyuan Chen
- SNSB-Bavarian State Collection of Zoology, Munich, Germany
- Department Biology II, Ludwig-Maximilians-Universität, Munich, Germany
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18
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Martynov A, Lundin K, Picton B, Fletcher K, Malmberg K, Korshunova T. Multiple paedomorphic lineages of soft-substrate burrowing invertebrates: parallels in the origin of Xenocratena and Xenoturbella. PLoS One 2020; 15:e0227173. [PMID: 31940379 PMCID: PMC6961895 DOI: 10.1371/journal.pone.0227173] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 12/12/2019] [Indexed: 01/21/2023] Open
Abstract
Paedomorphosis is an important evolutionary force. It has previously been suggested that a soft-substrate sediment-dwelling (infaunal) environment facilitates paedomorphic evolution in marine invertebrates. However, until recently this proposal was never rigorously tested with robust phylogeny and broad taxon selection. Here, for the first time, we present a molecular phylogeny for a majority of the 21 families of one of the largest nudibranch subgroups (Aeolidacea) and show that the externally highly simplified vermiform nudibranch family, Pseudovermidae, with clearly defined paedomorphic traits and inhabiting a soft-substrata environment, is a sister group to the complex nudibranch family, Cumanotidae. We also report the rediscovery of one of the most enigmatic nudibranchs-Xenocratena suecica-on the Swedish and Norwegian coasts 70 years after it was first found. Xenocratena was described from the same location and environment in the Swedish Gullmar fjord as one of the most enigmatic vermiform organisms, Xenoturbella bocki, which represents either an original simple bilaterian body plan or secondary simplification of a more complex organisation. Our results show that Xenocratena suecica reveals an onset of parallel paedomorphic evolution so we have proposed the new family, Xenocratenidae fam. n., to accommodate the molecular and morphological disparities we discovered. The paedomorphic origin of another aeolidacean family, Embletoniidae, is also demonstrated for the first time. Thus, by presenting three independent lineages from non-closely related aeolidacean families, Xenocratenidae fam. n., Cumanotidae and Embletoniidae, we confirm with phylogenetic data that a soft-substrata burrowing-related environment strongly favours paedomorphic evolution. We suggest criteria to distinguish ancestral and derived characters in the context of modifications of ontogenetic cycles. Applying an evolutionary model of the soft substrate-driven multiple paedomorphic origin of several families of nudibranch molluscs we propose that it is plausible to extend this model to other marine invertebrates and suggest that the ancestral organisation of the enigmatic metazoan, Xenoturbella, might correspond to the larval part of a complex ancestral bilaterian ontogenetic cycle with sedentary/semi-sedentary adult stages and planula-like larval stages.
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Affiliation(s)
| | - Kennet Lundin
- Gothenburg Natural History Museum, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | - Bernard Picton
- National Museums Northern Ireland, Holywood, Northern Ireland, United Kingdom
- Queen’s University, Belfast, Northern Ireland, United Kingdom
| | - Karin Fletcher
- Milltech Marine, Port Orchard, Washington, United States of America
| | - Klas Malmberg
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Aquatilis, Gothenburg, Sweden
| | - Tatiana Korshunova
- Zoological Museum, Moscow State University, Moscow, Russia
- Koltzov Institute of Developmental Biology RAS, Moscow, Russia
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19
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Structure and function of the digestive system in molluscs. Cell Tissue Res 2019; 377:475-503. [DOI: 10.1007/s00441-019-03085-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 07/26/2019] [Indexed: 02/06/2023]
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20
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Schäfer GG, Pedrini-Martha V, Schnegg R, Dallinger R, Jackson DJ, Lieb B. Hemocyanin genes as indicators of habitat shifts in Panpulmonata? Mol Phylogenet Evol 2018; 130:99-103. [PMID: 30326285 DOI: 10.1016/j.ympev.2018.10.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Revised: 10/10/2018] [Accepted: 10/10/2018] [Indexed: 01/11/2023]
Abstract
Hemocyanin is the primary respiratory protein for the majority of the Mollusca and therefore directly interfaces with the physiological requirements of each species and the environments to which they are adapted. Hemocyanin is therefore likely to have been evolutionarily imprinted by significant habitat shifts. In the gastropod clade Panpulmonata (>30,000 species) major realm transitions have occurred multiple times independently and may have contributed to the diversification of this group. Yet, little is known about the adaptive changes linked to these habitat shifts. In order to gain deeper insight into the evolution of panpulmonate hemocyanins and to infer possible impacts associated with those scenarios, we have assembled and analysed hemocyanin isoforms from 4 panpulmonate species: (i) Helix pomatia, (ii) Cantareus aspersus (both Helicidae, Stylommatophora), (iii) Arion vulgaris (Arionidae, Stylommatophora) and (iv) Lymnaea stagnalis (Lymnaeidae, Hygrophila). Additionally, we describe a new hemocyanin isoform within the genome of the euopisthobranch Aplysia californica. Using these newly acquired hemocyanin data, we performed a phylogenetic analysis that reveals independent duplication events of hemocyanin within lineages that correlate with significant habitat shifts.
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Affiliation(s)
- Gabriela Giannina Schäfer
- Johannes Gutenberg-University of Mainz, Institute of Molecular Physiology, Johann-Joachim-Becher-Weg 7, D-55128 Mainz, Germany
| | - Veronika Pedrini-Martha
- Institute of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstraße 25, A-6020 Innsbruck, Austria
| | - Raimund Schnegg
- Institute of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstraße 25, A-6020 Innsbruck, Austria
| | - Reinhard Dallinger
- Institute of Zoology and Center of Molecular Biosciences, University of Innsbruck, Technikerstraße 25, A-6020 Innsbruck, Austria
| | - Daniel John Jackson
- Georg-August University of Göttingen, Department of Geobiology, Goldschmidtstr. 3, 37077 Göttingen, Germany
| | - Bernhard Lieb
- Johannes Gutenberg-University of Mainz, Institute of Molecular Physiology, Johann-Joachim-Becher-Weg 7, D-55128 Mainz, Germany.
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21
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Korshunova T, Lundin K, Malmberg K, Picton B, Martynov A. First true brackish-water nudibranch mollusc provides new insights for phylogeny and biogeography and reveals paedomorphosis-driven evolution. PLoS One 2018; 13:e0192177. [PMID: 29538398 PMCID: PMC5851531 DOI: 10.1371/journal.pone.0192177] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Accepted: 01/16/2018] [Indexed: 11/18/2022] Open
Abstract
A unique example of brackish water fjord-related diversification of a new nudibranch genus and species Bohuslania matsmichaeli gen. n., sp. n. is presented. There are only few previously known brackish-water opisthobranchs and B. matsmichaeli gen. n., sp. n. is the first ever described brackish-water nudibranch with such an extremely limited known geographical range and apparently strict adherence to salinity levels lower than 20 per mille. Up to date the new taxon has been found only in a very restricted area in the Idefjord, bordering Sweden and Norway, but not in any other apparently suitable localities along the Swedish and Norwegian coasts. We also show in this study for the first time the molecular phylogenetic sister relationship between the newly discovered genus Bohuslania and the genus Cuthona. This supports the validity of the family Cuthonidae, which was re-established recently. Furthermore, it contributes to the understanding of the evolutionary patterns and classification of the whole group Nudibranchia. Molecular and morphological data indicate that brackish water speciation was triggered by paedomorphic evolution among aeolidacean nudibranchs at least two times independently. Thus, the present discovery of this new nudibranch genus contributes to several biological fields, including integration of molecular and morphological data as well as phylogenetic and biogeographical patterns.
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Affiliation(s)
- Tatiana Korshunova
- Koltzov Institute of Developmental Biology, Moscow, Russia
- Zoological Museum of the Moscow State University, Moscow, Russia
| | - Kennet Lundin
- Gothenburg Natural History museum, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | | | - Bernard Picton
- National Museums Northern Ireland, Cultra, United Kingdom
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22
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Bouchet P, Rocroi JP, Hausdorf B, Kaim A, Kano Y, Nützel A, Parkhaev P, Schrödl M, Strong EE. Revised Classification, Nomenclator and Typification of Gastropod and Monoplacophoran Families. MALACOLOGIA 2017. [DOI: 10.4002/040.061.0201] [Citation(s) in RCA: 303] [Impact Index Per Article: 43.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- Philippe Bouchet
- Institut de Systématique, Evolution, Biodiversité ISYEB — UMR7205 — CNRS, MNHN, UPMC, EPHE Muséum National d'Histoire Naturelle Sorbonne Universités, 55 Rue Buffon, F-75231 Paris, France;
| | - Jean-Pierre Rocroi
- Institut de Systématique, Evolution, Biodiversité ISYEB — UMR7205 — CNRS, MNHN, UPMC, EPHE Muséum National d'Histoire Naturelle Sorbonne Universités, 55 Rue Buffon, F-75231 Paris, France;
| | - Bernhard Hausdorf
- Zoological Museum, Center of Natural History, Universität Hamburg, Germany
| | - Andrzej Kaim
- Institute of Paleobiology, Polish Academy of Sciences, Warszawa, Poland
| | - Yasunori Kano
- Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan
| | - Alexander Nützel
- Bavarian State Collection of Palaeontology and Geology, Faculty of Earth Sciences and GeoBio-Center LMU, München, Germany
| | - Pavel Parkhaev
- Borissiak Paleontological Institute, Russian Academy of Sciences, Moscow, Russia
| | - Michael Schrödl
- Bavarian State Collection of Zoology, Faculty of Biology and GeoBio-Center LMU, München, Germany
| | - Ellen E. Strong
- National Museum of Natural History, Smithsonian Institution, Washington D.C., U.S.A
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Korshunova T, Martynov A, Bakken T, Evertsen J, Fletcher K, Mudianta IW, Saito H, Lundin K, Michael Schrödl, Picton B. Polyphyly of the traditional family Flabellinidae affects a major group of Nudibranchia: aeolidacean taxonomic reassessment with descriptions of several new families, genera, and species (Mollusca, Gastropoda). Zookeys 2017; 717:1-139. [PMID: 29391848 PMCID: PMC5784208 DOI: 10.3897/zookeys.717.21885] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 11/08/2017] [Indexed: 12/29/2022] Open
Abstract
The Flabellinidae, a heterogeneous assembly of supposedly plesiomorphic to very derived sea slug groups, have not yet been addressed by integrative studies. Here novel material of rarely seen Arctic taxa as well as North Atlantic, North and South Pacific, and tropical Indo-West Pacific flabellinid species is investigated morpho-anatomically and with multi-locus markers (partial COI, 16S rDNA, 28S rDNA and H3) which were generated and analysed in a comprehensive aeolid taxon sampling. It was found that the current family Flabellinidae is polyphyletic and its phylogeny and taxonomic patterns cannot be understood without considering members from all the Aeolidacean families and, based on a robust phylogenetic hypothesis, morpho-anatomical evolution of aeolids is more complex than suspected in earlier works and requires reclassification of the taxon. Morphological diversity of Flabellinidae is corroborated by molecular divergence rates and supports establishing three new families (Apataidae fam. n., Flabellinopsidae fam. n., Samlidae fam. n.), 16 new genera, 13 new species, and two new subspecies among the former Flabellinidae. Two families, namely Coryphellidae and Paracoryphellidae, are restored and traditional Flabellinidae is considerably restricted. The distinctness of the recently described family Unidentiidae is confirmed by both morphological and molecular data. Several species complexes among all ex-"Flabellinidae" lineages are recognised using both morphological and molecular data. The present study shows that Facelinidae and Aeolidiidae, together with traditional "Tergipedidae", deeply divide traditional "Flabellinidae." Diagnoses for all aeolidacean families are therefore provided and additionally two new non-flabellinid families (Abronicidae fam. n. and Murmaniidae fam. n.) within traditional tergipedids are established to accommodate molecular and morphological disparity. To address relationships and disparity, we propose a new family system for aeolids. Here the aeolidacean species are classified into at least 102 genera and 24 families. Operational rules for integration of morphological and molecular data for taxonomy are suggested.
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Affiliation(s)
- Tatiana Korshunova
- Koltzov Institute of Developmental Biology, RAS, 26 Vavilova Str., 119334 Moscow, Russia
- Zoological Museum, Moscow State University, Bolshaya Nikitskaya Str. 6, 125009 Moscow, Russia
| | - Alexander Martynov
- Zoological Museum, Moscow State University, Bolshaya Nikitskaya Str. 6, 125009 Moscow, Russia
| | - Torkild Bakken
- NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway
| | - Jussi Evertsen
- NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway
| | | | | | - Hiroshi Saito
- National Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Japan
| | - Kennet Lundin
- Gothenburg Natural History Museum, Box 7283, S-40235, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Box 461, S-40530, Gothenburg, Sweden
| | - Michael Schrödl
- Zoologische Staatssammlung München, Münchhausenstr. 21, D-81247 München, Germany
| | - Bernard Picton
- National Museums Northern Ireland, Holywood, Northern Ireland, United Kingdom
- Queen’s University, Belfast, Northern Ireland, United Kingdom
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Martynov A, Hasegawa K, Korshunova T. The Japanese Red Data book marine mollusk Japonacteon nipponensis and a Japonacteon population from Russia belong to the same species: Molecular evidence and recommendations for conservation. Glob Ecol Conserv 2017. [DOI: 10.1016/j.gecco.2016.12.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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25
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Australian Tropical Marine Micromolluscs: An Overwhelming Bias. DIVERSITY-BASEL 2016. [DOI: 10.3390/d8030017] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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