1
|
Lester RE, Macqueen A, Armstrong EK, Dodemaide DT, Dwyer GK, Mock TS, Payne S, Smith M, Storen M, Webb L. Can freshwater plants and algae act as an effective feed supplement to reduce methane emissions from ruminant livestock? THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 914:169296. [PMID: 38104811 DOI: 10.1016/j.scitotenv.2023.169296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 12/08/2023] [Accepted: 12/09/2023] [Indexed: 12/19/2023]
Abstract
Methane production by livestock is a substantial component of greenhouse gas emissions worldwide. The marine red algae, Asparagopsis taxiformis, has been identified as a possible supplement in livestock feeds due to its potent inhibition of methane production but currently is unable to be produced at scale. Finding additional taxa that inhibit methane production is therefore desirable. Here we provide foundational evidence of methanogenesis-inhibiting properties in Australian freshwater plants and algae, reviewing candidate species and testing species' chemical composition and efficacy in vitro. Candidate plant species and naturally-occurring algal mixes were collected and assessed for ability to reduce methane in batch testing and characterised for biochemical composition, lipids and fatty acids, minerals and DNA. We identified three algal mixes and one plant (Montia australasica) with potential to reduce methane yield in in vitro batch assay trials. All three algal mixes contained Spirogyra, although additional testing would be needed to confirm this alga was responsible for the observed activity. For the two samples that underwent multiple dose testing, Algal mix 1 (predominantly Spirogyra maxima) and M. australasica, there seems to be an optimum dose but sources, harvesting and storage conditions potentially determine their methanogenesis-inhibiting activity. Based on their compositions, fatty acids are likely to be acting to reduce methane in Algal mix 1 while M. australasica likely contains substantial amounts of the flavonoids apigenin and kaempferol, which are associated with methane reduction. Based on their mineral composition, the samples tested would be safe for livestock consumption at an inclusion rate of 20%. Thus, we identified multiple Australian species that have potential to be used as a feed supplement to reduce methane yield in livestock which may be suitable for individual farmers to grow and feed, reducing complexities of supply associated with marine alternatives and suggesting avenues for investigation for similar species elsewhere.
Collapse
Affiliation(s)
- Rebecca E Lester
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia.
| | - Ashley Macqueen
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - Emily K Armstrong
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - David T Dodemaide
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - Georgia K Dwyer
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - Thomas S Mock
- Nutrition and Seafood Laboratory, School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Stephanie Payne
- School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Michael Smith
- Centre for Regional and Rural Futures, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - Michaela Storen
- School of Life and Environmental Sciences, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| | - Lawrence Webb
- School of Life and Environmental Sciences, Deakin University, Locked Bag 20000, Geelong, Victoria 3220, Australia
| |
Collapse
|
2
|
Pérez G, Krause SMB, Bodelier PLE, Meima-Franke M, Pitombo L, Irisarri P. Interactions between Cyanobacteria and Methane Processing Microbes Mitigate Methane Emissions from Rice Soils. Microorganisms 2023; 11:2830. [PMID: 38137974 PMCID: PMC10745823 DOI: 10.3390/microorganisms11122830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/16/2023] [Accepted: 11/18/2023] [Indexed: 12/24/2023] Open
Abstract
Cyanobacteria play a relevant role in rice soils due to their contribution to soil fertility through nitrogen (N2) fixation and as a promising strategy to mitigate methane (CH4) emissions from these systems. However, information is still limited regarding the mechanisms of cyanobacterial modulation of CH4 cycling in rice soils. Here, we focused on the response of methane cycling microbial communities to inoculation with cyanobacteria in rice soils. We performed a microcosm study comprising rice soil inoculated with either of two cyanobacterial isolates (Calothrix sp. and Nostoc sp.) obtained from a rice paddy. Our results demonstrate that cyanobacterial inoculation reduced CH4 emissions by 20 times. Yet, the effect on CH4 cycling microbes differed for the cyanobacterial strains. Type Ia methanotrophs were stimulated by Calothrix sp. in the surface layer, while Nostoc sp. had the opposite effect. The overall pmoA transcripts of Type Ib methanotrophs were stimulated by Nostoc. Methanogens were not affected in the surface layer, while their abundance was reduced in the sub surface layer by the presence of Nostoc sp. Our results indicate that mitigation of methane emission from rice soils based on cyanobacterial inoculants depends on the proper pairing of cyanobacteria-methanotrophs and their respective traits.
Collapse
Affiliation(s)
- Germán Pérez
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands or (G.P.); (S.M.B.K.); (M.M.-F.)
- Laboratory of Microbiology, Department of Plant Biology, Agronomy Faculty, University of the Republic, Montevideo 12900, Uruguay;
| | - Sascha M. B. Krause
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands or (G.P.); (S.M.B.K.); (M.M.-F.)
- School of Ecology and Environmental Sciences, East China Normal University, Shanghai 200062, China
| | - Paul L. E. Bodelier
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands or (G.P.); (S.M.B.K.); (M.M.-F.)
| | - Marion Meima-Franke
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands or (G.P.); (S.M.B.K.); (M.M.-F.)
| | - Leonardo Pitombo
- Department of Environmental Sciences, Federal University of São Carlos (UFSCar), São Paulo 18052-780, Brazil;
| | - Pilar Irisarri
- Laboratory of Microbiology, Department of Plant Biology, Agronomy Faculty, University of the Republic, Montevideo 12900, Uruguay;
| |
Collapse
|
3
|
Yan Q, Fang H, Wang D, Xiao X, Deng T, Li X, Wei F, Liu J, Lin C. Transfer and transformation characteristics of Zn and Cd in soil-rotation plant (Brassica napus L and Oryza sativa L) system and its influencing factors. Sci Rep 2023; 13:7393. [PMID: 37149722 PMCID: PMC10164187 DOI: 10.1038/s41598-023-34377-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 04/28/2023] [Indexed: 05/08/2023] Open
Abstract
Rice-rape rotation is a widely practiced cropping system in China. However, changes in soil properties and management could change the bioavailability of Cd, In order to explore the occurrence state, transportation and transformation characteristics of heavy metals Cd and Zn in rice-rape rotation system in Guizhou karst area with high background value of Cd. In the karst rice-rape rotation area, the physical and chemical properties of soil, chemical specifications and activities of Cd and Zn at different soil depths and during various crop growth stages, and the bioaccumulation of Cd and Zn in different tissues of rice and rape were studied by field experiment and laboratory analysis. The bioaccumulation of Cd and Zn and the effects of physical and chemical soil properties on the activities and bioavailabilities of Cd and Zn during rice-rape rotation were explored. The findings revealed that soil particle size, composition, pH, redox potential, soil organic matter, and Cd and Zn contents varied dramatically, especially in deep soils. The physical and chemical properties of the deep and surface soils were significantly related to the bioaccumulation of Cd and Zn. Cd and Zn are activated during crop rotation. Cd was easier to be enriched in rice, while Zn was easier to be enriched in rape. The correlation between Cd and Zn contents in Brassica campestris L and their enrichment abilities were not significant, but that in Oryza sativa L were significant. During rice-rape rotation, the chemical speciations and activities of Cd and Zn changed with the changes of soil properties and waterlogging environment. This study had important basic guiding significance for the evaluation, prevention and control of heavy metal pollution, and improving soil quality in different rotation systems in karst areas, and was conducive to promoting the safe production of rape and rice.
Collapse
Affiliation(s)
- Qiuxiao Yan
- Key Laboratory of Chemistry for Natural Products, Guizhou Medical University, Guiyang, China
- Natural Products Research Center of Guizhou Province, Guiyang, China
- College of Forestry, Guizhou University, Guiyang, China
| | - Hui Fang
- Beautiful Village Construction Center of Quzhou City, Quzhou, Zhejiang, China
| | - Daoping Wang
- Key Laboratory of Chemistry for Natural Products, Guizhou Medical University, Guiyang, China.
- Natural Products Research Center of Guizhou Province, Guiyang, China.
| | - Xuefeng Xiao
- College of Forestry, Guizhou University, Guiyang, China
| | - Tingfei Deng
- Key Laboratory of Chemistry for Natural Products, Guizhou Medical University, Guiyang, China
- Natural Products Research Center of Guizhou Province, Guiyang, China
| | - Xiangying Li
- Institute of New Rural Development, Guizhou University, Guiyang, China
| | - Fuxiao Wei
- Key Laboratory of Chemistry for Natural Products, Guizhou Medical University, Guiyang, China
- Natural Products Research Center of Guizhou Province, Guiyang, China
| | - Jiming Liu
- College of Forestry, Guizhou University, Guiyang, China.
| | - Changhu Lin
- Department of Labor Health and Environmental Hygiene, School of Public Health, Guizhou Medical University, Guiyang, China
| |
Collapse
|
4
|
Management Strategies to Mitigate N2O Emissions in Agriculture. Life (Basel) 2022; 12:life12030439. [PMID: 35330190 PMCID: PMC8949344 DOI: 10.3390/life12030439] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 03/03/2022] [Accepted: 03/07/2022] [Indexed: 12/25/2022] Open
Abstract
The concentration of greenhouse gases (GHGs) in the atmosphere has been increasing since the beginning of the industrial revolution. Nitrous oxide (N2O) is one of the mightiest GHGs, and agriculture is one of the main sources of N2O emissions. In this paper, we reviewed the mechanisms triggering N2O emissions and the role of agricultural practices in their mitigation. The amount of N2O produced from the soil through the combined processes of nitrification and denitrification is profoundly influenced by temperature, moisture, carbon, nitrogen and oxygen contents. These factors can be manipulated to a significant extent through field management practices, influencing N2O emission. The relationships between N2O occurrence and factors regulating it are an important premise for devising mitigation strategies. Here, we evaluated various options in the literature and found that N2O emissions can be effectively reduced by intervening on time and through the method of N supply (30–40%, with peaks up to 80%), tillage and irrigation practices (both in non-univocal way), use of amendments, such as biochar and lime (up to 80%), use of slow-release fertilizers and/or nitrification inhibitors (up to 50%), plant treatment with arbuscular mycorrhizal fungi (up to 75%), appropriate crop rotations and schemes (up to 50%), and integrated nutrient management (in a non-univocal way). In conclusion, acting on N supply (fertilizer type, dose, time, method, etc.) is the most straightforward way to achieve significant N2O reductions without compromising crop yields. However, tuning the rest of crop management (tillage, irrigation, rotation, etc.) to principles of good agricultural practices is also advisable, as it can fetch significant N2O abatement vs. the risk of unexpected rise, which can be incurred by unwary management.
Collapse
|
5
|
Malyan SK, Bhatia A, Tomer R, Harit RC, Jain N, Bhowmik A, Kaushik R. Mitigation of yield-scaled greenhouse gas emissions from irrigated rice through Azolla, Blue-green algae, and plant growth-promoting bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:51425-51439. [PMID: 33987722 DOI: 10.1007/s11356-021-14210-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 04/27/2021] [Indexed: 06/12/2023]
Abstract
Irrigated transplanted flooded rice is a major source of methane (CH4) emission. We carried out experiments for 2 years in irrigated flooded rice to study if interventions like methane-utilizing bacteria, Blue-green algae (BGA), and Azolla could mitigate the emission of CH4 and nitrous oxide (N2O) and lower the yield-scaled global warming potential (GWP). The experiment included nine treatments: T1 (120 kg N ha-1 urea), T2 (90 kg N ha-1 urea + 30 kg N ha-1 fresh Azolla), T3 (90 kg N ha-1 urea + 30 kg N ha-1 Blue-green algae (BGA), T4 (60 kg N ha-1 urea + 30 kg N ha-1 BGA + 30 kg N ha-1 Azolla, T5 (120 kg N ha-1 urea + Hyphomicrobium facile MaAL69), T6 (120 kg N ha-1 by urea + Burkholderia vietnamiensis AAAr40), T7 (120 kg N ha-1 by urea + Methylobacteruim oryzae MNL7), T8 (120 kg N ha-1 urea + combination of Burkholderia AAAr40, Hyphomicrobium facile MaAL69, Methylobacteruim oryzae MNL7), and T9 (no N fertilizer). Maximum decrease in cumulative CH4 emission was observed with the application of Methylobacteruim oryzae MNL7 in T7 (19.9%), followed by Azolla + BGA in T4 (13.2%) as compared to T1 control. N2O emissions were not significantly affected by the application of CH4-oxidizing bacteria. However, significantly lower (P<0.01) cumulative N2O emissions was observed in T4 (40.7%) among the fertilized treatments. Highest yields were observed in Azolla treatment T2 with 25% less urea N application. The reduction in yield-scaled GWP was at par in T4 (Azolla and BGA) and T7 (Methylobacteruim oryzae MNL7) treatments and reduced by 27.4% and 15.2% in T4 and T7, respectively, as compared to the T1 (control). K-means clustering analysis showed that the application of Methylobacteruim oryzae MNL7, Azolla, and Azolla + BGA can be an effective mitigation option to reduce the global warming potential while increasing the yield.
Collapse
Affiliation(s)
- Sandeep K Malyan
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Arti Bhatia
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Ritu Tomer
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Ramesh Chand Harit
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Niveta Jain
- Centre for Environment Science and Climate Resilient Agriculture, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Arpan Bhowmik
- Division of Design of Experiments, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, 110012, India
| | - Rajeev Kaushik
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| |
Collapse
|
6
|
Yang G, Ji H, Liu H, Feng Y, Zhang Y, Chen L, Guo Z. Nitrogen fertilizer reduction in combination with Azolla cover for reducing ammonia volatilization and improving nitrogen use efficiency of rice. PeerJ 2021; 9:e11077. [PMID: 33777536 PMCID: PMC7986579 DOI: 10.7717/peerj.11077] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 02/17/2021] [Indexed: 11/21/2022] Open
Abstract
Background Excessive nitrogen (N) application rate with low N use efficiency (NUE) caused a considerable amount of N losses, especially ammonia volatilization (AV). Proper N fertilizer reduction (RN) could significantly reduce AV. However, continuous RN led to a nutrient deficiency in the soil and therefore negatively impacted the NUE and rice yield. Paddy Azolla, a good green manure, is considered as a promising measure to decrease AV and improve NUE and grain yield of rice. However, there is limited information on the integrated effects of RN and Azolla cover on the AV, NUE, and rice yield, especially in the highly fertilized rice-growing systems. Methods The experiment was conducted including eight treatments: the control (without N fertilizer and Azolla cover), Azolla cover without N fertilizer (A), farmer’s N application rate (FN), FN + Azolla cover (FNA), 15% RN from FN (RN15), RN15 + Azolla cover (RN15A). 30% RN from FN (RN30), RN30 + Azolla cover (RN30A). The integrated effects of N fertilizer reduction and Azolla cover on AV, NUE, and rice grain was evaluated. Results RN15A and RN30A substantially reduced total AV by 50.3 and 66.9% compared with FN, respectively, primarily due to the lower surface water ammonia concentrations and pH. RN improved the efficiency of Azolla cover on reducing AV, with 4.1–9.9% higher than for FN. Compared with the FN, RN15A and RN30A enhanced apparent N recovery efficiency (ANRE) by 46.5 and 39.1%, which might be responsible for the lower NH3 emission and the increased total N uptake / total chemical N applied. Furthermore, RN15A and RN30A reduced yield-scaled volatilization by 52.3 and 64.3% than for FN, respectively. Thus, combining 15–30% RN with Azolla cover may be a way to reduce AV and improve ANRE without decreasing rice grain yield.
Collapse
Affiliation(s)
- Guoying Yang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.,Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing, Jiangsu, China
| | - Hongting Ji
- Nanjing Institute of Agricultural Sciences in Jiangsu Hilly Area, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China
| | - Hongjiang Liu
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.,Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing, Jiangsu, China
| | - Yanfang Feng
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China
| | - Yuefang Zhang
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.,Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing, Jiangsu, China
| | - Liugen Chen
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.,Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing, Jiangsu, China
| | - Zhi Guo
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, China.,Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing, Jiangsu, China
| |
Collapse
|
7
|
Wu H, Hao B, Cai Y, Liu G, Xing W. Effects of submerged vegetation on sediment nitrogen-cycling bacterial communities in Honghu Lake (China). THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 755:142541. [PMID: 33039889 DOI: 10.1016/j.scitotenv.2020.142541] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 09/09/2020] [Accepted: 09/19/2020] [Indexed: 06/11/2023]
Abstract
Sediment nitrogen (N) cycling is an important biological removal process for N permanently and driven by N-cycling microbial community. There is a growing interest in interactions between submerged vegetation (SV) and sediment N-cycling bacterial community, because of the close link between rooted aquatic plants and the sediment microbes. However, the effects of SV on the sediment N-cycling bacterial community are still controversial. Furthermore, the discrimination of direct and indirect effects of SV on the N-cycling bacterial community remains unclear. Here, we investigated the biomass and species richness of SV and determined the corresponding environment factors (water quality and sediment properties) in Honghu Lake (China). We also used functional genes as markers to unveil the bacterial diversity and community composition and abundance in lake sediments. Our results showed that biomass and species richness of SV affected the composition, diversity and abundance of sediment N-cycling bacterial communities through improving lake water quality and sediment properties. With the increasing richness and abundance of SV, the diversity of most N-cycling bacterial assemblages including nitrifying, denitrifying and DNRA bacteria decreased, while the abundance increased. However, the anammox bacterial assemblage in sediments showed inverse trends. Sediment carbon vs. nitrogen (C:N) ratio negatively affected the abundance of amoA and nirS + nirK + nosZ bacterial assemblages. Additionally, due to the presence of SV, positive interactions among N-cycling bacterial assemblages were found, such as amoA and nrfA bacterial assemblages. Overall, our findings confirmed the significant effects of SV on the N-cycling bacterial community structure and abundance. Moreover, the direct effects of SV on the N-cycling bacterial community and the indirect effects through altering the sediment C were clarified in our study. Our results casted a new light on the negative effects of high C:N ratio. From the study, we made a conclusion that the better SV develops, the greater nitrogen removal occurs in lake sediments.
Collapse
Affiliation(s)
- Haoping Wu
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China; CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Beibei Hao
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China; CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Yanpeng Cai
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Guihua Liu
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Wei Xing
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China.
| |
Collapse
|
8
|
Liew FJ, Schilling JS. High-efficiency methane capture by living fungi and dried fungal hyphae (necromass). JOURNAL OF ENVIRONMENTAL QUALITY 2020; 49:1467-1476. [PMID: 33118202 DOI: 10.1002/jeq2.20136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 06/19/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
Abstract
Fungi can hasten microbial degradation of hydrophobic compounds by enhancing capture and dissolution into biofilms. For methane (CH4 ) released from natural soils and agricultural systems, prokaryotes are ultimately responsible for oxidation and degradation; however, in many cases Henry's law of gas dissolution, not oxidation, is rate-limiting. Given that fungi can improve capture and bioremediation of other hydrophobic compounds (e.g., toluene), we tested fungi for CH4 capture. We used a batch system of CH4 -flooded vials to screen candidate fungi. We found 79% removal efficiency by Ganoderma lucidum relative to activated carbon. In a follow-up, we found comparable efficiency in other Ganoderma species (G. applanatum, G. meredithae). However, these efficiency gains by Ganoderma species could not be sustained when inoculated wood substrates were placed in "live" soils. Substrates colonized naturally, without preinoculations, performed similarly to those deployed with (native) test strains, likely because inoculated fungi were outcompeted and displaced by native colonizers. Instead of rescreening using more combative fungi, we tested an alternative way to present fungi with high single-strain efficiencies for filtration: in dried form as dead biomass (necromass). In dried biomass trials, dried G. lucidum biomass performed better than when testing living biomass, again with the highest strain-specific removal efficiencies (84% of activated carbon). These results demonstrate the potential for G. lucidum, commonly used in biomaterial production, in a variety of indoor and outdoor biofiltration scenarios. It also implies an overlooked, potentially large role for fungi and their soil necromass in capturing and reducing CH4 emissions from soils in nature.
Collapse
Affiliation(s)
- Feng Jin Liew
- Dep. of Bioproducts and Biosystems Engineering, Univ. of Minnesota, 2004 Folwell Ave, Saint Paul, MN, 55108, USA
| | - Jonathan S Schilling
- Dep. of Plant and Microbial Biology, Univ. of Minnesota, 1500 Gortner Ave., Saint Paul, MN, 55108, USA
| |
Collapse
|
9
|
Biogeochemical Processes of C and N in the Soil of Mangrove Forest Ecosystems. FORESTS 2020. [DOI: 10.3390/f11050492] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The mangrove forest provides various ecosystem services in tropical and subtropical regions. Many of these services are driven by the biogeochemical cycles of C and N, and soil is the major reservoir for these chemical elements. These cycles may be influenced by the changing climate. The high plant biomass in mangrove forests makes these forests an important sink for blue C storage. However, anaerobic soil conditions may also turn mangrove forests into an environmentally detrimental producer of greenhouse gases (such as CH4 and N2O), especially as air temperatures increase. In addition, the changing environmental factors associated with climate change may also influence the N cycles and change the patterns of N2 fixation, dissimilatory nitrate reduction to ammonium, and denitrification processes. This review summarizes the biogeochemical processes of C and N cycles in mangrove forest soils based on recently published studies, and how these processes may respond to climate change, with the aim of predicting the impacts of climate change on the mangrove forest ecosystem.
Collapse
|
10
|
An Exploration of Common Greenhouse Gas Emissions by the Cyanobiont of the Azolla-Nostoc Symbiosis and Clues as to Nod Factors in Cyanobacteria. PLANTS 2019; 8:plants8120587. [PMID: 31835592 PMCID: PMC6963936 DOI: 10.3390/plants8120587] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 11/30/2019] [Accepted: 12/04/2019] [Indexed: 11/17/2022]
Abstract
Azolla is a genus of aquatic ferns that engages in a unique symbiosis with a cyanobiont that is resistant to cultivation. Azolla spp. are earmarked as a possible candidate to mitigate greenhouse gases, in particular, carbon dioxide. That opinion is underlined here in this paper to show the broader impact of Azolla spp. on greenhouse gas mitigation by revealing the enzyme catalogue in the Nostoc cyanobiont to be a poor contributor to climate change. First, regarding carbon assimilation, it was inferred that the carboxylation activity of the Rubisco enzyme of Azolla plants is able to quench carbon dioxide on par with other C3 plants and fellow aquatic free-floating macrophytes, with the cyanobiont contributing on average ~18% of the carboxylation load. Additionally, the author demonstrates here, using bioinformatics and past literature, that the Nostoc cyanobiont of Azolla does not contain nitric oxide reductase, a key enzyme that emanates nitrous oxide. In fact, all Nostoc species, both symbiotic and nonsymbiotic, are deficient in nitric oxide reductases. Furthermore, the Azolla cyanobiont is negative for methanogenic enzymes that use coenzyme conjugates to emit methane. With the absence of nitrous oxide and methane release, and the potential ability to convert ambient nitrous oxide into nitrogen gas, it is safe to say that the Azolla cyanobiont has a myriad of features that are poor contributors to climate change, which on top of carbon dioxide quenching by the Calvin cycle in Azolla plants, makes it an efficient holistic candidate to be developed as a force for climate change mitigation, especially in irrigated urea-fed rice fields. The author also shows that Nostoc cyanobionts are theoretically capable of Nod factor synthesis, similar to Rhizobia and some Frankia species, which is a new horizon to explore in the future.
Collapse
|
11
|
Imchen M, Kumavath R, Vaz ABM, Góes-Neto A, Barh D, Ghosh P, Kozyrovska N, Podolich O, Azevedo V. 16S rRNA Gene Amplicon Based Metagenomic Signatures of Rhizobiome Community in Rice Field During Various Growth Stages. Front Microbiol 2019; 10:2103. [PMID: 31616390 PMCID: PMC6764247 DOI: 10.3389/fmicb.2019.02103] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Accepted: 08/26/2019] [Indexed: 11/21/2022] Open
Abstract
Rice is a major staple food across the globe. Its growth and productivity is highly dependent on the rhizobiome where crosstalk takes place between plant and the microbial community. Such interactions lead to selective enrichment of plant beneficial microbes which ultimately defines the crop health and productivity. In this study, rhizobiome modulation is documented throughout the development of rice plant. Based on 16S rRNA gene affiliation at genus level, abundance, and diversity of plant growth promoting bacteria increased during the growth stages. The observed α diversity and rhizobiome complexity increased significantly (p < 0.05) during plantation. PCoA indicates that different geographical locations shared similar rhizobiome diversity but exerted differential enrichment (p < 0.001). Diversity of enriched genera represented a sigmoid curve and subsequently declined after harvest. A major proportion of dominant enriched genera (p < 0.05, abundance > 0.1%), based on 16S rRNA gene, were plant growth promoting bacteria that produces siderophore, indole-3-acetic acid, aminocyclopropane-1-carboxylic acid, and antimicrobials. Hydrogenotrophic methanogens dominated throughout cultivation. Type I methanotrophs (n = 12) had higher diversity than type II methanotrophs (n = 6). However, the later had significantly higher abundance (p = 0.003). Strong enrichment pattern was also observed in type I methanotrophs being enriched during water logged stages. Ammonia oxidizing Archaea were several folds more abundant than ammonia oxidizing bacteria. K-strategists Nitrosospira and Nitrospira dominated ammonia and nitrite oxidizing bacteria, respectively. The study clarifies the modulation of rhizobiome according to the rice developmental stages, thereby opening up the possibilities of bio-fertilizer treatment based on each cultivation stages.
Collapse
Affiliation(s)
- Madangchanok Imchen
- Department of Genomic Sciences, School of Biological Sciences, Central University of Kerala, Kasaragod, India
| | - Ranjith Kumavath
- Department of Genomic Sciences, School of Biological Sciences, Central University of Kerala, Kasaragod, India
| | - Aline B M Vaz
- Molecular and Computational Biology of Fungi Laboratory, Department of Microbiology, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Aristóteles Góes-Neto
- Molecular and Computational Biology of Fungi Laboratory, Department of Microbiology, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Debmalya Barh
- Molecular and Computational Biology of Fungi Laboratory, Department of Microbiology, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil.,Centre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Purba Medinipur, India
| | - Preetam Ghosh
- Department of Computer Sciences, Virginia Commonwealth University, Richmond, VA, United States
| | - Natalia Kozyrovska
- Institute of Molecular Biology and Genetics, National Academy of Sciences, Kyiv, Ukraine
| | - Olga Podolich
- Institute of Molecular Biology and Genetics, National Academy of Sciences, Kyiv, Ukraine
| | - Vasco Azevedo
- Laboratório de Genética Celular e Molecular, Departamento de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| |
Collapse
|
12
|
Brouwer P, Schluepmann H, Nierop KGJ, Elderson J, Bijl PK, van der Meer I, de Visser W, Reichart G, Smeekens S, van der Werf A. Growing Azolla to produce sustainable protein feed: the effect of differing species and CO 2 concentrations on biomass productivity and chemical composition. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2018; 98:4759-4768. [PMID: 29573358 PMCID: PMC6099237 DOI: 10.1002/jsfa.9016] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2017] [Revised: 02/07/2018] [Accepted: 03/13/2018] [Indexed: 05/18/2023]
Abstract
BACKGROUND Since available arable land is limited and nitrogen fertilizers pollute the environment, cropping systems ought to be developed that do not rely on them. Here we investigate the rapidly growing, N2 -fixing Azolla/Nostoc symbiosis for its potential productivity and chemical composition to determine its potential as protein feed. RESULTS In a small production system, cultures of Azolla pinnata and Azolla filiculoides were continuously harvested for over 100 days, yielding an average productivity of 90.0-97.2 kg dry weight (DW) ha-1 d-1 . Under ambient CO2 levels, N2 fixation by the fern's cyanobacterial symbionts accounted for all nitrogen in the biomass. Proteins made up 176-208 g kg-1 DW (4.9 × total nitrogen), depending on species and CO2 treatment, and contained more essential amino acids than protein from soybean. Elevated atmospheric CO2 concentrations (800 ppm) significantly boosted biomass production by 36-47%, without decreasing protein content. Choice of species and CO2 concentrations further affected the biomass content of lipids (79-100 g kg-1 DW) and (poly)phenols (21-69 g kg-1 DW). CONCLUSIONS By continuous harvesting, high protein yields can be obtained from Azolla cultures, without the need for nitrogen fertilization. High levels of (poly)phenols likely contribute to limitations in the inclusion rate of Azolla in animal diets and need further investigation. © 2018 The Authors. Journal of the Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
Collapse
Affiliation(s)
- Paul Brouwer
- Molecular Plant Physiology, Institute of Environmental BiologyUtrecht UniversityUtrechtThe Netherlands
- Department of Earth Sciences, Faculty of GeosciencesUtrecht UniversityUtrechtThe Netherlands
| | - Henriette Schluepmann
- Molecular Plant Physiology, Institute of Environmental BiologyUtrecht UniversityUtrechtThe Netherlands
| | - Klaas GJ Nierop
- Department of Earth Sciences, Faculty of GeosciencesUtrecht UniversityUtrechtThe Netherlands
| | - Janneke Elderson
- BioscienceWageningen University & ResearchWageningenThe Netherlands
| | - Peter K Bijl
- Department of Earth Sciences, Faculty of GeosciencesUtrecht UniversityUtrechtThe Netherlands
- LPP FoundationUtrechtThe Netherlands
| | | | - Willem de Visser
- BioscienceWageningen University & ResearchWageningenThe Netherlands
| | - Gert‐Jan Reichart
- Department of Earth Sciences, Faculty of GeosciencesUtrecht UniversityUtrechtThe Netherlands
- Royal Netherlands Institute for Sea Research (NIOZ)Den BurgThe Netherlands
| | - Sjef Smeekens
- Molecular Plant Physiology, Institute of Environmental BiologyUtrecht UniversityUtrechtThe Netherlands
| | - Adrie van der Werf
- Agrosystems ResearchWageningen University & ResearchWageningenThe Netherlands
| |
Collapse
|