Hypercarbons in polyhedral structures

Small Ring Molecules Comprising 3-6 Boron Atoms: An Account on Synthesis, Structure, and Orbital Engineering

ConspectusUnlike carbon, boron does not usually form ring compounds due to its electron-deficiency-driven affinity toward polyhedral geometries. The polyhedral boranes having closo-, nido-, arachno-, or hypho-shapes can be structurally and electronically correlated using various electron counting rules developed by Wade, Mingos, and one of us. However, in the last few decades, boron chemistry progressed significantly toward ring systems. In this regard, three of our research groups have made significant contributions to the development of boron ring molecules through different synthetic approaches. While the Ghosh group generally starts from transition metal (TM) stabilized boron species, the Himmel group typically starts from electron-deficient TM-free boron ring compounds. On the other hand, the Jemmis group studies boron rings and their analogous structures computationally and develops electron counting rules to describe them. Over the past few years, through different synthetic approaches, several boron ring molecules have been prepared by our research groups and others. Recently, the Ghosh group has reported the synthesis of an almost planar B6-ring that is stabilized by a TM template. Similarly, the B3-, B4-, and B5-rings have also been stabilized in the coordination spheres of early and late TMs. The recent work of Himmel has uncovered some remarkable diversity in the structures and bonding of B3 and B4 rings, along with their redox reactions. The well-known hydrocarbon analogues of these borane rings, i.e., two-dimensional aromatic compounds [C3H3]+, [C5H5]-, [C6H6], etc., are governed by Hückel's (4n + 2) π-electron rule. However, planar or nearly planar borane rings are not seriously thought of as achievable targets. One of the reasons for this is the influence of the Rudolph diagram in the thought process of chemists that the nido- and arachno-structures generated from closo-polyhedral boranes must also be three-dimensional (3D) fragments. However, this is not the only possibility. Flat arachno- and nido-boranes reminiscent of their organic counterparts follow from an equivalent of the Rudolph diagram. Therefore, this Account is very much necessary for the boron community, in particular, to design and synthesize 3-6 membered boron rings or beyond. This Account aims to highlight significant ongoing experimental and theoretical results in this area from our groups, in addition to relevant works from other groups wherever appropriate. This will also bring into focus various ways in which the flat Bn-systems can be stabilized, such as the utilization of TM or main group caps, utilization of various Lewis bases, edge-condensation of small rings, control over the electron count, and orbital engineering.

Pro-oxidant response and accelerated ferroptosis caused by synergetic Au(I) release in hypercarbon-centered gold(I) cluster prodrugs

Medicinal applications of gold complexes have recently attracted attention due to their innovative antitumor mechanisms. In this work, two hypercoordinated carbon-centered gold clusters PAA4 and PAA5 are quantitatively synthesized by an intramolecular 6-exo-dig cyclization of polymetalated precursors. The on-bench and in vitro experimental studies demonstrate that the characteristic hypercarbon-tetragold(I) multi-center bonding in PAA4 and PAA5 not only guarantees their stability under common physiological conditions, but also facilitates a glutathione (GSH)-triggered prompt and synergetic release of active Au(I) ions in the GSH-overexpressed and acidic microenvironment of human bladder cancer EJ cells. The instantly massive release of coordination unsaturated Au(I) ions causes the efficient inhibition of thioredoxin reductases and then induces a rapid pro-oxidant response, consequently causing the occurrence of accelerated ferroptosis of EJ cells. As a result, these hypercarbon-centered gold(I) cluster prodrugs show high cytotoxicity to bladder cancer cell lines and thus exhibit a significant inhibition effect towards bladder tumors in vivo. Correlation of the synergetic domino dissociation of carbon-polymetal multi-center bonding in metal clusters with the accelerated ferroptosis of cancer cells provides a strategy for metallo-prodrugs and opens a broader prospect for the biological application of metal cluster compounds.

On the Aromaticity and 13C-NMR Pattern of Pentagonal-Pyramidal Hexamethylbenzene Dication [C6(CH3)6]2+: A {C5(CH3)5}−–{CCH3}3+ Aggregate

The experimentally characterized hexamethylbenzene dication C6(CH3)62+ shows a pentagonal-pyramidal structure involving a carbon-capped five-membered ring. The structural characterization of this hypercoordination (or hypervalency) gives rise if the aromatic behavior remains in the resulting pentagon ring. Here, we investigated the induced magnetic field of C6(CH3)62+ to gain a deeper understanding of the resulting non-classical structural situation in a representative pentagonal-pyramidal structure. Our results support the view of a C5(CH3)5−/CCH33+ structure, depicting a π-aromatic pentamethylcyclopentadienyl anion with a 6π-electron kernel, with a capped carbon which does not decrease the characteristic shielding cone property of the aromatic ring. Hence, carbon-capped rings are suggested to retain the aromatic behavior from the former aromatic ring. We expect that the analysis of both the overall magnetic response and NMR chemical shifts may be informative to unravel the characteristic patterns in the formation of hypervalent carbon atoms involving non-classical chemical environments.

Overlap of Radial Dangling Orbitals Controls the Relative Stabilities of Polyhedral B nH n- x Isomers ( n = 5-12, x = 0 to n - 1)

The removal of H atoms from polyhedral boranes results in the formation of dangling radial orbitals with one electron each. If there is a requirement of electrons for skeletal bonding to meet the Wade's rule, these are provided from the exohedral orbitals. Additional electrons occupy a linear combination of the dangling orbitals. Stabilization of these molecular orbitals depends on their overlap. The lateral (sideways) overlap of dangling orbitals decreases with the decreasing cluster size from 12 to 5 boron atoms as the orbitals become more and more splayed out. Thus, as the number of dangling orbitals increases, the destabilization of their combinations increases at a higher rate for smaller polyhedral boranes, leading to flat structures with the removal of a fewer number of hydrogens. Though exohedral orbitals form better overlap in larger polyhedral clusters, the increase of electrons with the removal of H atoms results in occupancy of antibonding skeletal orbitals (beyond Wade's rules) and leads to flat structures. The reverse happens when hydrogens are added to a flat cluster. Substitution of BH by Si does not change structural patterns.

Half- and mixed-sandwich metallacarboranes for potential applications in medicine

Today, medicinal chemistry is still clearly dominated by organic chemistry, and commercially available boron-based drugs are rare. In contrast to hydrocarbons, boranes prefer the formation of polyhedral clusters via delocalized 3c2e bonds, such as polyhedral dicarba-closo-dodecaborane(12) (closo-C2B10H12). These clusters have remarkable biological stability, and the three isomers, 1,2- (ortho), 1,7- (meta), and 1,12-dicarba-closo-dodecaborane(12) (para), have attracted much interest due to their unique structural features. Furthermore, anionic nido clusters ([7,8-C2B9H11]2−), derived from the neutral icosahedral closo cluster 1,2-dicarba-closo-dodecaborane(12) by deboronation followed by deprotonation are suitable ligands for transition metals and offer the possibility to form metallacarboranes, for example via coordination through the upper pentagonal face of the cluster. The isolobal analogy between the cyclopentadienyl(–1) ligand (Cp−) and [C2B9H11]2− clusters (dicarbollide anion, Cb2−) is the motivation in using Cb2− as ligand for coordination to a metal center to design compounds for various applications. This review focuses on potential applications of half- and mixed-sandwich-type transition metal complexes in medicine.

A systematic examination of classical and multi-center bonding in heteroborane clusters

A systematic revision of bonding types on a broad series of heteroboranes covering closo, nido, arachno and hypho architectures with incorporated tetrel, pnictogen or chalcogen heterovertices.

Double C-H bond activation of acetylene by atomic boron in forming aromatic cyclic-HBC2BH in solid neon

The organo-boron species formed from the reactions of boron atoms with acetylene in solid neon are investigated using matrix isolation infrared spectroscopy with isotopic substitutions as well as quantum chemical calculations. Besides the previously reported single C-H bond activation species, a cyclic-HBC2BH diboron species is formed via double C-H bond activation of acetylene. It is characterized to have a closed-shell singlet ground state with planar D2h symmetry. Bonding analysis indicates that it is a doubly aromatic species involving two delocalized σ electrons and two delocalized π electrons. This finding reveals the very first example of double C-H bond activation of acetylene in forming new organo-boron compounds.

Global structure of C2B4H4: hypercloso or not

Through an extensive isomeric search utilizing a “skeleton-ligand” cluster-growth strategy, the global minimum of C₂B₄H₄ is found to adopt a ribbon-like structure (01) rather than the previously reported hypercloso structure (04).

Hypercoordinate β-carbon in Grubbs and Schrock olefin metathesis metallacycles

From the analysis of structural, bond order, electron density and ¹³C NMR data of a large variety of ruthenacyclobutanes and tungstenacyclobutanes, we show that the C_β of the metallacycle is pentacoordinate.

Some novel molecular frameworks involving representative elements

Several new molecular frameworks with interesting structures, based on clusters of main group elements have been studied at different levels of theory with various basis sets. Conceptual density functional theory based reactivity descriptors and nucleus independent chemical shift provide important insights into their bonding, reactivity, stability and aromaticity.

A Theoretical Study on the Mechanism of Boron Metathesis

The mechanism of the boron metathesis reaction of the transition-metal-aminoborylene complex Cp(CO)(2)FeBN(CH(3))(2+) (8) with EX, where EX = H(3)PO (9ap), H(3)AsO (9bp), H(3)PS (9aq), H(3)AsS (9bq), CH(3)CHCH(2) (9cr), (NH(2))(2)CCH(2) (9dr), H(2)CO (9ep), and (NH(2))(2)CO (9dp) is investigated at the B3LYP/LANL2DZ level. The analysis of bonding and charge distribution shows that the Fe-borylene complex (8) is a Fischer-type carbene analogue. The attack of the olefin takes place at the metal end of the M=C bond of the metal-carbene complex in olefin metathesis and proceeds via [2 + 2] cycloaddition, while in boron metathesis, the initial attack of the substrates takes place at the positively charged B atom of the Fe-borylene complex and forms the preferred acyclic intermediate. The energetics of boron metathesis is comparable to that of the olefin metathesis. Substrates that are polar and a have low-lying sigma* molecular orbital (weak sigma bond) prefer the boron metathesis reaction. The relative stability of the metathesis products is controlled by the strength of the Fe-E and B-X bonds of the products 13 and 14, respectively. We have also investigated the possibility of a beta-hydride-transfer reaction in the Fe-borylene complex.

Electronic structure and bonding studies on triple-decker sandwich complexes with a P6middle ring

DFT and hybrid HF-DFT studies of structure and bonding of CpMP6MCp triple-decker sandwich complexes, ranging from 18-28 valence electrons (VE) with M=Sc, Y, Ti, Zr, Hf, V, Nb, Ta, Cr, Mo, and W, show that the middle P6 ring complexes adopt symmetric planar (28 valence electron count [VEC]), asymmetric planar (26 VEC), and puckered (24 VEC) geometries. According to the mno Rule, 50 skeletal electrons are needed for these triple-decker cluster frameworks. For 28 VEC, this corresponds to 10 electrons more than the 50 electrons of the mno Rule if all VE of the metal are included. These additional electrons control the distortion of a P6 middle ring and other finer structural details. Completely filled 2a* and 2b* orbitals in 28 VE complexes lead to a planar symmetrical P6 middle ring, while the occupancy in either 2a* or 2b* alone explains the in-plane distortions (asymmetric) in 26 VE complexes. In comparison with 28 VE complexes, the puckering of P6 middle ring in 24 VE complexes is due to the greater stabilization of 5a and the extra stabilization of the +4 oxidation state of Ti. The quintet state of 22 VE complexes is planar as 2a* and 2b* are half filled. Similar geometrical and bonding patterns of CpScP6ScCp and C2P3H2ScC3P3H3ScC2P3H2 support the carbon-phosphorus analogy further. The 18 VE systems, CpScC3B3H6ScCp+ and CpScP3B3H3ScCp+, have the 50 skeletal electrons as stipulated by the mno Rule. Corresponding anions have 52 skeletal electrons (20 VE); the middle rings here are distorted in the plane.