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Liu D, Di B, Peng Z, Yin C, Zhu H, Wen X, Chen Q, Zhu J, Wu K. Surface-mediated ordering of pristine Salen molecules on coinage metals. Inorg Chem Front 2021. [DOI: 10.1039/d0qi00874e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The conformational isomers of Salen molecules and their self-assembled structures on coinage metal surfaces.
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Affiliation(s)
- Dan Liu
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Bin Di
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Zhantao Peng
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Cen Yin
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Hao Zhu
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Xiaojie Wen
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Qiwei Chen
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
| | - Junfa Zhu
- National Synchrotron Radiation Laboratory
- University of Science and Technology of China
- Hefei 230029
- China
| | - Kai Wu
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
- China
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2
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Maiti BK, Govil N, Kundu T, Moura JJG. Designed Metal-ATCUN Derivatives: Redox- and Non-redox-Based Applications Relevant for Chemistry, Biology, and Medicine. iScience 2020; 23:101792. [PMID: 33294799 PMCID: PMC7701195 DOI: 10.1016/j.isci.2020.101792] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023] Open
Abstract
The designed “ATCUN” motif (amino-terminal copper and nickel binding site) is a replica of naturally occurring ATCUN site found in many proteins/peptides, and an attractive platform for multiple applications, which include nucleases, proteases, spectroscopic probes, imaging, and small molecule activation. ATCUN motifs are engineered at periphery by conjugation to recombinant proteins, peptides, fluorophores, or recognition domains through chemically or genetically, fulfilling the needs of various biological relevance and a wide range of practical usages. This chemistry has witnessed significant growth over the last few decades and several interesting ATCUN derivatives have been described. The redox role of the ATCUN moieties is also an important aspect to be considered. The redox potential of designed M-ATCUN derivatives is modulated by judicious choice of amino acid (including stereochemistry, charge, and position) that ultimately leads to the catalytic efficiency. In this context, a wide range of M-ATCUN derivatives have been designed purposefully for various redox- and non-redox-based applications, including spectroscopic probes, target-based catalytic metallodrugs, inhibition of amyloid-β toxicity, and telomere shortening, enzyme inactivation, biomolecules stitching or modification, next-generation antibiotic, and small molecule activation.
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Affiliation(s)
- Biplab K Maiti
- National Institute of Technology Sikkim, Ravangla Campus, Barfung Block, Ravangla Sub Division, South Sikkim 737139, India
| | - Nidhi Govil
- National Institute of Technology Sikkim, Ravangla Campus, Barfung Block, Ravangla Sub Division, South Sikkim 737139, India
| | - Taraknath Kundu
- National Institute of Technology Sikkim, Ravangla Campus, Barfung Block, Ravangla Sub Division, South Sikkim 737139, India
| | - José J G Moura
- LAQV-REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Campus de Caparica, 2829-516 Caparica, Portugal
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3
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Erxleben A. Transition metal salen complexes in bioinorganic and medicinal chemistry. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2017.06.060] [Citation(s) in RCA: 91] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Hernández-Gil J, Ferrer S, Castiñeiras A, Lloret F. A Unique Discrete Tetranuclear Cu′–Cu(N-N)2Cu–Cu′ Copper(II) Complex, Built from a μ3-1,2,4-Triazolato-μ-carboxylato Ligand, as an Effective DNA Cleavage Agent. Inorg Chem 2012; 51:9809-19. [DOI: 10.1021/ic301168k] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Javier Hernández-Gil
- Departament de Química
Inorgànica, Universitat de València, Vicent Andrés Estellés s/n, 46100-Burjassot, Valencia,
Spain
| | - Sacramento Ferrer
- Departament de Química
Inorgànica, Universitat de València, Vicent Andrés Estellés s/n, 46100-Burjassot, Valencia,
Spain
| | - Alfonso Castiñeiras
- Departamento
de
Química Inorgánica, Universidad de Santiago de Compostela, Campus Universitario Sur,
E-15782 Santiago de Compostela, Spain
| | - Francesc Lloret
- Institut de Ciència
Molecular, Universitat de València, Catedràtic José Beltrán 2, 46980-Paterna,
Valencia, Spain
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Chakrabarty R, Mukherjee PS, Stang PJ. Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles. Chem Rev 2011; 111:6810-918. [PMID: 21863792 PMCID: PMC3212633 DOI: 10.1021/cr200077m] [Citation(s) in RCA: 2277] [Impact Index Per Article: 175.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Rajesh Chakrabarty
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Partha Sarathi Mukherjee
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India
| | - Peter J Stang
- Department of Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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Rabindra Reddy P, Shilpa A. Synthesis, Characterization, and DNA-Binding and -Cleavage Properties of Dinuclear CuIISalophen/Salen Complexes. Chem Biodivers 2011; 8:1245-65. [DOI: 10.1002/cbdv.201000153] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Aiba Y, Sumaoka J, Komiyama M. Artificial DNA cutters for DNA manipulation and genome engineering. Chem Soc Rev 2011; 40:5657-68. [PMID: 21566825 DOI: 10.1039/c1cs15039a] [Citation(s) in RCA: 121] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
This tutorial review provides recent developments in artificial cutters for site-selective scission of DNA with the focus on chemistry-based DNA cutters. They are useful tools for molecular biology and biotechnology, since their site-selectivity of scission is much higher than that of naturally occurring restriction enzymes and also their scission site is freely chosen. In order to prepare these cutters, a DNA-cutting molecule is combined with a sequence-recognizing molecule in a covalent or non-covalent way. At targeted sites in single-stranded and double-stranded DNAs, the scission occurs via either oxidative cleavage of nucleotides or hydrolysis of phosphodiester linkages. Among many successful examples, an artificial restriction DNA cutter, prepared from Ce(iv)/EDTA and pseudo-complementary peptide nucleic acid, hydrolyzed double-stranded DNA at the target site. The scission site and scission specificity are determined simply in terms of the Watson-Crick rule so that even the whole genome of human beings was selectively cut at one predetermined site. Consistently, homologous recombination in human cells was successfully promoted by this tool. For the purpose of comparison, protein-based DNA cutters (e.g., zinc finger nucleases) are also briefly described. The potential applications of these cutters and their future aspects are discussed.
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Affiliation(s)
- Yuichiro Aiba
- Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904, Japan
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Deuss PJ, den Heeten R, Laan W, Kamer PCJ. Bioinspired Catalyst Design and Artificial Metalloenzymes. Chemistry 2011; 17:4680-98. [DOI: 10.1002/chem.201003646] [Citation(s) in RCA: 166] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Silverman SK. DNA as a versatile chemical component for catalysis, encoding, and stereocontrol. Angew Chem Int Ed Engl 2011; 49:7180-201. [PMID: 20669202 DOI: 10.1002/anie.200906345] [Citation(s) in RCA: 201] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
DNA (deoxyribonucleic acid) is the genetic material common to all of Earth's organisms. Our biological understanding of DNA is extensive and well-exploited. In recent years, chemists have begun to develop DNA for nonbiological applications in catalysis, encoding, and stereochemical control. This Review summarizes key advances in these three exciting research areas, each of which takes advantage of a different subset of DNA's useful chemical properties.
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Affiliation(s)
- Scott K Silverman
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801, USA.
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Trujillo A, Justaud F, Toupet L, Cador O, Carrillo D, Manzur C, Hamon JR. New copper(ii)-centered complexes with organometallic donor–acceptor substituted unsymmetrical Schiff base ligands. NEW J CHEM 2011. [DOI: 10.1039/c0nj01018a] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Silverman SK. DNA - eine vielseitige chemische Verbindung für die Katalyse, zur Kodierung und zur Stereokontrolle. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200906345] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Abstract
The unique chiral structure of DNA has been a source of inspiration for the development of a new class of bio-inspired catalysts. The novel concept of DNA-based asymmetric catalysis, which was introduced only five years ago, has been applied successfully in a variety of catalytic enantioselective reactions. In this tutorial review, the ideas behind this novel concept will be introduced, an overview of the catalytic chemistry available to date will be given and the role of DNA in catalysis will be discussed. Finally, an overview of new developments of potential interest for DNA-based asymmetric catalysis will be provided.
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Affiliation(s)
- Arnold J Boersma
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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Reddy P, Manjula P, Chakraborty T, Samanta R. A 1 : 2 Copper(II)-Tripeptide Complex for DNA Binding and Cleavage Agent under Physiological Conditions. Chem Biodivers 2009; 6:764-73. [DOI: 10.1002/cbdv.200800079] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Li K, Zhang J, Zhang ZW, Xiang YZ, Lin HH, Yu XQ. Immobilization cyclen copper (II) on merrifield resin: Efficient oxidative cleavage of plasmid DNA. J Appl Polym Sci 2009. [DOI: 10.1002/app.29266] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Kleij AW. New templating strategies with salen scaffolds (Salen=N,N'-bis(salicylidene)ethylenediamine dianion). Chemistry 2008; 14:10520-9. [PMID: 18803190 DOI: 10.1002/chem.200801149] [Citation(s) in RCA: 122] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Templated approaches towards selective organic synthesis is a common feature in nature in which nucleic acid templated synthesis plays a crucial role in various fundamental biological processes. The key feature that allows control over the amazing selectivity found in natural processes is evidently the effective molarity of the reaction partners that is mediated by the macromolecular templation event. An ongoing challenge within many chemical sciences is to exploit similar templating principles and make use of synthetic systems that are designed for specific chemical conversions. Here, we describe the recent developments that involve (metallo)salen scaffolds that are used for diverse templating events (salen=N,N'-bis(salicylidene)ethylenediamine dianion).
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Affiliation(s)
- Arjan W Kleij
- Institute of Chemical Research of Catalonia (ICIQ), Av. Països Catalans 16, 43007 Tarragona, Spain.
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Arslan P, Ihara T, Mukae M, Jyo A. The effect of local structural disruption on the yield of photochemical ligation between anthracene-oligonucleotide conjugates. ANAL SCI 2008; 24:173-6. [PMID: 18187868 DOI: 10.2116/analsci.24.173] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The techniques of chemical ligation have attracted great attention as an alternative to enzymatic joining of DNA ends. Here we introduce the photoligation of anthracene-modified ODN conjugates through anthracene cyclodimer formation. The effect of the positions and the kinds of single base mismatch on the template was evaluated using eight templates with one-base displacements. We found out that the yield of the ligation was affected by mispairing in a position-dependent manner. Such results would be attributed to the disruption of the local structure at the ligation site.
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Affiliation(s)
- Pelin Arslan
- Department of Applied Chemistry and Biochemistry, Graduate School of Science and Technology, Kumamoto University, 2-39-1 Kurokami, Kumamoto 860-8555, Japan
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Li K, Zhang J, Zhang JJ, Zhang ZW, Zhuang ZJ, Xiao D, Lin HH, Yu XQ. Ferrocene-bridging dinuclear cyclen copper(II) complexes as high efficient artificial nucleases: design, synthesis and interaction with DNA. Appl Organomet Chem 2008. [DOI: 10.1002/aoc.1384] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Dijk EW, Feringa BL, Roelfes G. DNA in Metal Catalysis. TOP ORGANOMETAL CHEM 2008. [DOI: 10.1007/3418_2008_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Affiliation(s)
- Adam P Silverman
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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Abstract
Recent developments show encouraging results for the use of DNA as a construction material for nanometer-sized objects. Today, however, DNA-based molecular nanoarchitectures are constructed with mainly unmodified or at best end-modified oligonucleotides, thus shifting the development of functionalized DNA structures into the limelight. One of most recent developments in this direction is the substitution of the canonical Watson-Crick base pairs by metal complexes. In this way "metal-base pairs" are created, which could potentially impart magnetic or conductive properties to DNA-based nanostructures. This review summarizes research which started almost 45 years ago with the investigation of how metal ions interact with unmodified DNA and which recently culminated in the development of artificial ligand-like nucleobases so far able to coordinate up to ten metal ions inside a single DNA duplex in a programmable fashion.
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Affiliation(s)
- Guido H Clever
- Department of Chemistry and Biochemistry, Ludwig Maximilians University Munich, Butenandtstrasse 5-13, Haus F, 81377 Munich, Germany
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