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Kim J, Stockton AM, Jensen EC, Mathies RA. Pneumatically actuated microvalve circuits for programmable automation of chemical and biochemical analysis. LAB ON A CHIP 2016; 16:812-9. [PMID: 26864083 DOI: 10.1039/c5lc01397f] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Programmable microfluidic platforms (PMPs) are enabling significant advances in the utility of microfluidics for chemical and biochemical analysis. Traditional microfluidic devices are analogous to application-specific devices--a new device is needed to implement each new chemical or biochemical assay. PMPs are analogous to digital electronic processors--all that is needed to implement a new assay is a change in the order of operations conducted by the device. In this review, we introduce PMPs based on normally-closed microvalves. We discuss recent applications of PMPs in diverse fields including genetic analysis, antibody-based biomarker analysis, and chemical analysis in planetary exploration. Prospects, challenges, and future concepts for this emerging technology will also be presented.
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Affiliation(s)
- Jungkyu Kim
- Department of Mechanical Engineering, Texas Tech University, Lubbock, TX, USA
| | - Amanda M Stockton
- Department of Chemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | | | - Richard A Mathies
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
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2
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Van Dorst B, Brivio M, Van Der Sar E, Blom M, Reuvekamp S, Tanzi S, Groenhuis R, Adojutelegan A, Lous EJ, Frederix F, Stuyver LJ. Integration of an optical CMOS sensor with a microfluidic channel allows a sensitive readout for biological assays in point-of-care tests. Biosens Bioelectron 2015; 78:126-131. [PMID: 26599482 DOI: 10.1016/j.bios.2015.11.027] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 10/23/2015] [Accepted: 11/10/2015] [Indexed: 11/28/2022]
Abstract
In this manuscript, a microfluidic detection module, which allows a sensitive readout of biological assays in point-of-care (POC) tests, is presented. The proposed detection module consists of a microfluidic flow cell with an integrated Complementary Metal-Oxide-Semiconductor (CMOS)-based single photon counting optical sensor. Due to the integrated sensor-based readout, the detection module could be implemented as the core technology in stand-alone POC tests, for use in mobile or rural settings. The performance of the detection module was demonstrated in three assays: a peptide, a protein and an antibody detection assay. The antibody detection assay with readout in the detection module proved to be 7-fold more sensitive that the traditional colorimetric plate-based ELISA. The protein and peptide assay showed a lower limit of detection (LLOD) of 200 fM and 460 fM respectively. Results demonstrate that the sensitivity of the immunoassays is comparable with lab-based immunoassays and at least equal or better than current mainstream POC devices. This sensitive readout holds the potential to develop POC tests, which are able to detect low concentrations of biomarkers. This will broaden the diagnostic capabilities at the clinician's office and at patient's home, where currently only the less sensitive lateral flow and dipstick POC tests are implemented.
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Affiliation(s)
| | | | | | - Marko Blom
- Micronit Microfluidics, Twente, The Netherlands
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3
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Willis PA, Creamer JS, Mora MF. Implementation of microchip electrophoresis instrumentation for future spaceflight missions. Anal Bioanal Chem 2015; 407:6939-63. [PMID: 26253225 DOI: 10.1007/s00216-015-8903-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 06/30/2015] [Accepted: 07/03/2015] [Indexed: 11/27/2022]
Abstract
We present a comprehensive discussion of the role that microchip electrophoresis (ME) instrumentation could play in future NASA missions of exploration, as well as the current barriers that must be overcome to make this type of chemical investigation possible. We describe how ME would be able to fill fundamental gaps in our knowledge of the potential for past, present, or future life beyond Earth. Despite the great promise of ME for ultrasensitive portable chemical analysis, to date, it has never been used on a robotic mission of exploration to another world. We provide a current snapshot of the technology readiness level (TRL) of ME instrumentation, where the TRL is the NASA systems engineering metric used to evaluate the maturity of technology, and its fitness for implementation on missions. We explain how the NASA flight implementation process would apply specifically to ME instrumentation, and outline the scientific and technology development issues that must be addressed for ME analyses to be performed successfully on another world. We also outline research demonstrations that could be accomplished by independent researchers to help advance the TRL of ME instrumentation for future exploration missions. The overall approach described here for system development could be readily applied to a wide range of other instrumentation development efforts having broad societal and commercial impact.
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Affiliation(s)
- Peter A Willis
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA,
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4
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Pang Y, Kim H, Liu Z, Stone HA. A soft microchannel decreases polydispersity of droplet generation. LAB ON A CHIP 2014; 14:4029-34. [PMID: 25144377 DOI: 10.1039/c4lc00871e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
We study the effect of softness of the microchannel on the process of droplet generation in two-phase flows in a T-junction microchannel. One side of the microchannel has a flexible thin PDMS layer, which vibrates naturally while droplets are generated; the deformation frequency coincides with the frequency of droplet formation. Furthermore, we compare the polydispersity of water-in-oil droplets formed with a microchannel with one soft wall with those formed in a conventional rigid microchannel. We show that deformation of the soft wall reduces the polydispersity in the droplet size.
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Affiliation(s)
- Yan Pang
- College of Mechanical Engineering & Applied Electronics Technology, Beijing University of Technology, Beijing, China
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5
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da Costa ET, Mora MF, Willis PA, do Lago CL, Jiao H, Garcia CD. Getting started with open-hardware: development and control of microfluidic devices. Electrophoresis 2014; 35:2370-7. [PMID: 24823494 PMCID: PMC4176689 DOI: 10.1002/elps.201400128] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Revised: 05/07/2014] [Accepted: 05/07/2014] [Indexed: 12/20/2022]
Abstract
Understanding basic concepts of electronics and computer programming allows researchers to get the most out of the equipment found in their laboratories. Although a number of platforms have been specifically designed for the general public and are supported by a vast array of on-line tutorials, this subject is not normally included in university chemistry curricula. Aiming to provide the basic concepts of hardware and software, this article is focused on the design and use of a simple module to control a series of PDMS-based valves. The module is based on a low-cost microprocessor (Teensy) and open-source software (Arduino). The microvalves were fabricated using thin sheets of PDMS and patterned using CO2 laser engraving, providing a simple and efficient way to fabricate devices without the traditional photolithographic process or facilities. Synchronization of valve control enabled the development of two simple devices to perform injection (1.6 ± 0.4 μL/stroke) and mixing of different solutions. Furthermore, a practical demonstration of the utility of this system for microscale chemical sample handling and analysis was achieved performing an on-chip acid-base titration, followed by conductivity detection with an open-source low-cost detection system. Overall, the system provided a very reproducible (98%) platform to perform fluid delivery at the microfluidic scale.
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Affiliation(s)
- Eric Tavares da Costa
- Department of Chemistry, The University of Texas at San Antonio
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo
| | - Maria F. Mora
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena CA, USA
| | - Peter A. Willis
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena CA, USA
| | - Claudimir L. do Lago
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo
| | - Hong Jiao
- HJ Science & Technology, 2929 Seventh Street, Suite 120, Berkeley, CA 94710 Berkeley, CA, USA
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6
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Rogers CI, Oxborrow JB, Anderson RR, Tsai LF, Nordin GP, Woolley AT. Microfluidic Valves Made From Polymerized Polyethylene Glycol Diacrylate. SENSORS AND ACTUATORS. B, CHEMICAL 2014; 191:10.1016/j.snb.2013.10.008. [PMID: 24357897 PMCID: PMC3864702 DOI: 10.1016/j.snb.2013.10.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Pneumatically actuated, non-elastomeric membrane valves fabricated from polymerized polyethylene glycol diacrylate (poly-PEGDA) have been characterized for temporal response, valve closure, and long-term durability. A ~100 ms valve opening time and a ~20 ms closure time offer valve operation as fast as 8 Hz with potential for further improvement. Comparison of circular and rectangular valve geometries indicates that the surface area for membrane interaction in the valve region is important for valve performance. After initial fabrication, the fluid pressure required to open a closed circular valve is ~50 kPa higher than the control pressure holding the valve closed. However, after ~1000 actuations to reconfigure polymer chains and increase elasticity in the membrane, the fluid pressure required to open a valve becomes the same as the control pressure holding the valve closed. After these initial conditioning actuations, poly-PEGDA valves show considerable robustness with no change in effective operation after 115,000 actuations. Such valves constructed from non-adsorptive poly-PEGDA could also find use as pumps, for application in small volume assays interfaced with biosensors or impedance detection, for example.
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Affiliation(s)
- Chad I. Rogers
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602
| | - Joseph B. Oxborrow
- Department of Electrical and Computer Engineering, Brigham Young University, Provo, Utah 84602
| | - Ryan R. Anderson
- Department of Electrical and Computer Engineering, Brigham Young University, Provo, Utah 84602
| | - Long-Fang Tsai
- Department of Electrical and Computer Engineering, Brigham Young University, Provo, Utah 84602
| | - Gregory P. Nordin
- Department of Electrical and Computer Engineering, Brigham Young University, Provo, Utah 84602
| | - Adam T. Woolley
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602
- To whom correspondence should be addressed. Phone: 801-422-1701.
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7
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Yang F, Zhang Y, Rafeah S, Ji H, Xie S, Ning Y, Zhang GJ. Accelerated DNA recombination on a functionalized microfluidic chip. RSC Adv 2014. [DOI: 10.1039/c4ra02076f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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8
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Gu P, Nishida T, Fan ZH. The use of polyurethane as an elastomer in thermoplastic microfluidic devices and the study of its creep properties. Electrophoresis 2013; 35:289-97. [PMID: 23868507 DOI: 10.1002/elps.201300160] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Revised: 06/04/2013] [Accepted: 06/05/2013] [Indexed: 01/04/2023]
Abstract
We report using polyurethane (PU) as an elastomer in microvalves integrated with thermoplastic microfluidic devices. Elastomer-based microvalves have been used in a number of applications and the elastomer often used is PDMS. Although it is a convenient material for prototyping, PDMS has been recognized to possess shortcomings such as solvent incompatibility and unfavorable manufacturability. We investigated the use of PU as an elastomer to address the challenges. A reliable method was developed to bond hybrid materials such as PU and cyclic olefin copolymer. The film thickness from 3.5 to 24.5 μm was studied to identify an appropriate thickness of PU films for desirable elasticity in microvalves. We integrated PU with thermally actuated, elastomer-based microvalves in thermoplastic devices. Valve actuations were demonstrated, and the relationship between the valve actuation time and heater power was studied. We compared PU with PDMS in terms of their microvalve performance. Valves with PDMS failed to function after two weeks since the thermal-sensitive solution evaporated through porous PDMS membrane, whereas the same valve with PU functioned properly after eight months. In addition, we evaluated the creep and creep recovery of PU, which is a common phenomenon of viscoelastic materials and is related to the long-term elastic property of PU after prolonged use.
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Affiliation(s)
- Pan Gu
- Interdisciplinary Microsystems Group, Department of Mechanical and Aerospace Engineering, University of Florida, Gainesville, FL, USA
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9
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Jensen EC, Stockton AM, Chiesl TN, Kim J, Bera A, Mathies RA. Digitally programmable microfluidic automaton for multiscale combinatorial mixing and sample processing. LAB ON A CHIP 2013; 13:288-96. [PMID: 23172232 PMCID: PMC3568922 DOI: 10.1039/c2lc40861a] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
A digitally programmable microfluidic Automaton consisting of a 2-dimensional array of pneumatically actuated microvalves is programmed to perform new multiscale mixing and sample processing operations. Large (μL-scale) volume processing operations are enabled by precise metering of multiple reagents within individual nL-scale valves followed by serial repetitive transfer to programmed locations in the array. A novel process exploiting new combining valve concepts is developed for continuous rapid and complete mixing of reagents in less than 800 ms. Mixing, transfer, storage, and rinsing operations are implemented combinatorially to achieve complex assay automation protocols. The practical utility of this technology is demonstrated by performing automated serial dilution for quantitative analysis as well as the first demonstration of on-chip fluorescent derivatization of biomarker targets (carboxylic acids) for microchip capillary electrophoresis on the Mars Organic Analyzer. A language is developed to describe how unit operations are combined to form a microfluidic program. Finally, this technology is used to develop a novel microfluidic 6-sample processor for combinatorial mixing of large sets (>2(6) unique combinations) of reagents. The digitally programmable microfluidic Automaton is a versatile programmable sample processor for a wide range of process volumes, for multiple samples, and for different types of analyses.
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Affiliation(s)
- Erik C. Jensen
- Biophysics Graduate Group, University of California, Berkeley, CA, USA
| | | | - Thomas N. Chiesl
- Department of Chemistry, University of California, Berkeley, CA, USA
| | - Jungkyu Kim
- Department of Chemistry, University of California, Berkeley, CA, USA
| | | | - Richard A. Mathies
- Biophysics Graduate Group, University of California, Berkeley, CA, USA
- Department of Chemistry, University of California, Berkeley, CA, USA
- ; Fax: +1 (510) 642-3599; Tel: +1 (510) 642-4192
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10
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Mora MF, Stockton AM, Willis PA. Microchip capillary electrophoresis instrumentation for in situ analysis in the search for extraterrestrial life. Electrophoresis 2012; 33:2624-38. [DOI: 10.1002/elps.201200102] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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11
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Araci IE, Quake SR. Microfluidic very large scale integration (mVLSI) with integrated micromechanical valves. LAB ON A CHIP 2012; 12:2803-6. [PMID: 22714259 DOI: 10.1039/c2lc40258k] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Microfluidic chips with a high density of control elements are required to improve device performance parameters, such as throughput, sensitivity and dynamic range. In order to realize robust and accessible high-density microfluidic chips, we have fabricated a monolithic PDMS valve architecture with three layers, replacing the commonly used two-layer design. The design is realized through multi-layer soft lithography techniques, making it low cost and easy to fabricate. By carefully determining the process conditions of PDMS, we have demonstrated that 8 × 8 and 6 × 6 μm(2) valve sizes can be operated at around 180 and 280 kPa differential pressure, respectively. We have shown that these valves can be fabricated at densities approaching 1 million valves per cm(2), substantially exceeding the current state of the art of microfluidic large-scale integration (mLSI) (thousands of valves per cm(2)). Because the density increase is greater than two orders of magnitude, we describe this technology as microfluidic very large scale integration (mVLSI), analogous to its electronic counterpart. We have captured and tracked fluorescent beads, and changed the electrical resistance of a fluidic channel by using these miniaturized valves in two different experiments, demonstrating that the valves are leakproof. We have also demonstrated that these valves can be addressed through multiplexing.
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Affiliation(s)
- Ismail Emre Araci
- Dept. of Bioengineering, Stanford University, and Howard Hughes Medical Institute, Stanford, CA 94305, USA.
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12
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Lee SH, van Noort D, Yang KA, Lee IH, Zhang BT, Park TH. Biomolecular theorem proving on a chip: a novel microfluidic solution to a classical logic problem. LAB ON A CHIP 2012; 12:1841-1848. [PMID: 22441410 DOI: 10.1039/c2lc20677c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Biomolecules inside a microfluidic system can be used to solve computational problems, such as theorem proving, which is an important class of logical reasoning problems. In this article, the Boolean variables (literals) were represented using single-stranded DNA molecules, and theorem proving was performed by the hybridization and ligation of these variables into a double-stranded "solution" DNA. Then, a novel sequential reaction mixing method in a microfluidic chip was designed to solve a theorem proving problem, where a reaction loop and three additional chambers were integrated and controlled by pneumatic valves. DNA hybridization, ligation, toehold-mediated DNA strand displacement, exonuclease I digestion, and fluorescence detection of the double-stranded DNA were sequentially performed using this platform. Depending on the computational result, detection of the correct answer was demonstrated based on the presence of a fluorescence signal. This result is the first demonstration that microfluidics can be used to facilitate DNA-based logical inference.
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Affiliation(s)
- Seung Hwan Lee
- School of Chemical and Biological Engineering, Bio-MAX Institute, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 151-744, Korea
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13
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Kim J, Jensen EC, Megens M, Boser B, Mathies RA. Integrated microfluidic bioprocessor for solid phase capture immunoassays. LAB ON A CHIP 2011; 11:3106-3112. [PMID: 21804972 DOI: 10.1039/c1lc20407f] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
A microfluidic device for solid-phase immunoassays based on microparticle labeling is developed using microvalve-control structures for automated sample processing. Programmable microvalve control in a multilayer structure provides automated sample delivery, adjustable hydrodynamic washing and compatibility with a wide range of substrates. Capture antibodies are derivatized on glass surfaces within the processor using an APTES patterning method, and magnetic microspheres conjugated with a secondary detection antibody are used as labels in a capture-sandwich format. In this microfluidic processor, washing force can be precisely controlled to remove the nonspecifically bound microparticles. Automated microfluidic immunoassays are demonstrated for mouse immunoglobulin (IgG) and human prostate specific antigen (PSA) with limits of detection of 1.8 and 3 pM, respectively. The sample processor architecture is easily parallelized for high-throughput analysis and easily interfaced with various assay substrates.
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Affiliation(s)
- Jungkyu Kim
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
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14
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Li Y, Jones W, Rasti F, Blaga I, Bogdan G, Eberhart D, Kobrin B, Lee D, Nielsen B, van Gelder E, Jovanovich S, Stern S. A flexible microfluidic processor for molecular biology: application to microarray sample preparation. LAB ON A CHIP 2011; 11:2541-2550. [PMID: 21691662 DOI: 10.1039/c1lc20244h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We describe a programmable microfluidic system with onboard pumps and valves that has the ability to process reaction volumes in the sub-microlitre to hundred microlitre range. The flexibility of the architecture is demonstrated with a commercial molecular biology protocol for mRNA amplification, implemented without significant modification. The performance of the microchip system is compared to conventional bench processing at each stage of the multistep protocol, and DNA microarrays are used to assess the quality and performance of bench- and microchip-amplified RNA. The results show that the microchip system reactions are similar to bench control reactions at each step, and that the microchip- and bench-derived amplified RNAs are virtually indistinguishable in differential microarray analyses.
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Affiliation(s)
- Yuan Li
- IntegenX, 5720 Stoneridge Drive, Pleasanton, CA 94588, USA
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15
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Jensen EC, Zeng Y, Kim J, Mathies RA. Microvalve Enabled Digital Microfluidic Systems for High Performance Biochemical and Genetic Analysis. ACTA ACUST UNITED AC 2010; 15:455-463. [PMID: 21218162 DOI: 10.1016/j.jala.2010.08.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Microfluidic devices offer unparalleled capability for digital microfluidic automation of sample processing and complex assay protocols in medical diagnostic and research applications. In our own work, monolithic membrane valves have enabled the creation of two platforms that precisely manipulate discrete, nanoliter-scale volumes of sample. The digital microfluidic Automaton uses two-dimensional microvalve arrays to combinatorially process nanoliter-scale sample volumes. This programmable system enables rapid integration of diverse assay protocols using a universal processing architecture. Microfabricated emulsion generator array (MEGA) devices integrate actively controlled 3-microvalve pumps to enable on-demand generation of uniform droplets for statistical encapsulation of microbeads and cells. A MEGA device containing 96 channels confers the capability of generating up to 3.4 × 10(6) nanoliter-volume droplets per hour for ultrahigh-throughput detection of rare mutations in a vast background of normal genotypes. These novel digital microfluidic platforms offer significant enhancements in throughput, sensitivity, and programmability for automated sample processing and analysis.
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Affiliation(s)
- Erik C Jensen
- Biophysics Graduate Group, University of California, Berkeley, CA 94720
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16
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Gu P, Liu K, Chen H, Nishida T, Fan ZH. Chemical-assisted bonding of thermoplastics/elastomer for fabricating microfluidic valves. Anal Chem 2010; 83:446-52. [PMID: 21121689 DOI: 10.1021/ac101999w] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Thermoplastics such as cyclic olefin copolymer (COC) and polymethylmethacrylate (PMMA) have been increasingly used in fabricating microfluidic devices. However, the state-of-the-art microvalve technology is a polydimethylsiloxane (PDMS)-based three-layer structure. In order to integrate such a valve with a thermoplastics-based microfluidic device, a bonding method for thermoplastics/PDMS must be developed. We report here a method to bond COC with PDMS through surface activation by corona discharge, surface modification using 3-(trimethoxysilyl)propyl methacrylate (TMSPMA), and thermal annealing. The method is also applicable to PMMA. The bonding strength between thermoplastics and PDMS was represented by the peeling force, which was measured using a method established by the International Organization for Standardization (ISO). The bonding strength measurement offered an objective and quantitative indicator for protocol optimization, as well as comparison with other PDMS-associated bonding methods. Using optimized bonding conditions, two valve arrays were fabricated in a COC/PDMS/COC device and cyclic operations of valve closing/opening were successfully demonstrated. The valve-containing devices withstood 100 psi (∼689 KPa) without delamination. Further, we integrated such valve arrays in a device for protein separation and demonstrated isoelectric focusing in the presence of valves.
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Affiliation(s)
- Pan Gu
- Interdisciplinary Microsystems Group, Department of Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611-6250, United States
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17
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Gijs MAM, Lacharme F, Lehmann U. Microfluidic applications of magnetic particles for biological analysis and catalysis. Chem Rev 2010; 110:1518-63. [PMID: 19961177 DOI: 10.1021/cr9001929] [Citation(s) in RCA: 372] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Martin A M Gijs
- Laboratory of Microsystems, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne EPFL, Switzerland.
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18
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Jensen EC, Bhat BP, Mathies RA. A digital microfluidic platform for the automation of quantitative biomolecular assays. LAB ON A CHIP 2010; 10:685-91. [PMID: 20221555 DOI: 10.1039/b920124f] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
A digital microfluidic platform for the automation of quantitative, multi-step biomolecular assays is developed and optimized. The platform consists of a 2-dimensional array of microvalves that can be programmed to perform reagent routing, mixing, rinsing, serial dilution, and many other operations using nanolitre scale volumes of sample. Discrete transfer of fluid between microvalves is characterized using gravimetric flow analysis and optimized to achieve maximum efficiency. Protocols for on-chip reagent mixing and serial dilution are optimized to achieve linearity over a 1000-fold dilution range. These optimized programs are used to develop a rapid, quantitative assay for hydrogen peroxide, a biomarker of oxidative stress. A sub-micromolar limit of detection is demonstrated with an 8.5 min program runtime, thus establishing this platform as an effective tool for the automation of multi-step bioassays. The programmability of this system enables rapid development of diverse assay protocols on a common chip format.
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Affiliation(s)
- Erik C Jensen
- Department of Biophysics, University of California at Berkeley, Berkeley, CA 94720, USA
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19
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Pitchaimani K, Sapp BC, Winter A, Gispanski A, Nishida T, Hugh Fan Z. Manufacturable plastic microfluidic valves using thermal actuation. LAB ON A CHIP 2009; 9:3082-7. [PMID: 19823723 DOI: 10.1039/b909742b] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
A low-cost, manufacturable, thermally actuated, plastic microfluidic valve has been developed. The valve contains an encapsulated, temperature-sensitive fluid, which expands, deflecting a thin elastomeric film into a fluidic channel to control fluid flow. The power input for thermal expansion of each microfluidic valve can be controlled using a printed circuit board (PCB)-based controller, which is suitable for mass production and large-scale integration. A plastic microfluidic device with such valves was fabricated using compression molding and thermal lamination. The operation of the valves was investigated by measuring a change in the microchannel's ionic conduction current mediated by the resistance variation corresponding to the deflection of the microvalve. Valve closing was also confirmed by the disappearance of fluorescence when a fluorescent solution was displaced in the valve region. Valve operation was characterized for heater power ranging from 36 mW to 80 mW. When the valve was actuating, the local channel temperature was 10 to 19 degrees C above the ambient temperature depending on the heater power used. Repetitive valve operations (up to 50 times) have been demonstrated with a flow resulting from a hydrostatic head. Valve operation was tested for a flow rate of 0.33-4.7 microL/min.
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Affiliation(s)
- Karthik Pitchaimani
- Interdisciplinary Microsystems Group, Department of Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611-6250, USA
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20
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Zhang W, Lin S, Wang C, Hu J, Li C, Zhuang Z, Zhou Y, Mathies RA, Yang CJ. PMMA/PDMS valves and pumps for disposable microfluidics. LAB ON A CHIP 2009; 9:3088-94. [PMID: 19823724 DOI: 10.1039/b907254c] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Poly(methyl methacrylate) (PMMA) is gaining in popularity in microfluidic devices because of its low cost, excellent optical transparency, attractive mechanical/chemical properties, and simple fabrication procedures. It has been used to fabricate micromixers, PCR reactors, CE and many other microdevices. Here we present the design, fabrication, characterization and application of pneumatic microvalves and micropumps based on PMMA. Valves and pumps are fabricated by sandwiching a PDMS membrane between PMMA fluidic channel and manifold wafers. Valve closing or opening can be controlled by adjusting the pressure in a displacement chamber on the pneumatic layer via a computer regulated solenoid. The valve provides up to 15.4 microL s(-1) at 60 kPa fluid pressure and seals reliably against forward fluid pressure as high as 60 kPa. A PMMA diaphragm pump can be assembled by simply connecting three valves in series. By varying valve volume or opening time, pumping rates ranging from nL to microL per second can be accurately achieved. The PMMA based valves and pumps were further tested in a disposable automatic nucleic acid extraction microchip to extract DNA from human whole blood. The DNA extraction efficiency was about 25% and the 260 nm/280 nm UV absorption ratio for extracted DNA was 1.72. Because of its advantages of inexpensive, facile fabrication, robust and easy integration, the PMMA valve and pump will find their wide application for fluidic manipulation in portable and disposable microfluidic devices.
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Affiliation(s)
- Wenhua Zhang
- Department of Chemical Biology, Key Laboratory of Analytical Sciences, College of Chemistry and Chemical Engineering, State Key Laboratory for Physical Chemistry of Solid Surface, and the Key Laboratory for Chemical Biology of Fujian Province, Xiamen University, Xiamen, 361005, China
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Zhang Y, Yu H, Qin J, Lin B. A microfluidic DNA computing processor for gene expression analysis and gene drug synthesis. BIOMICROFLUIDICS 2009; 3:44105. [PMID: 20216967 PMCID: PMC2835285 DOI: 10.1063/1.3259628] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2009] [Accepted: 10/17/2009] [Indexed: 05/08/2023]
Abstract
Boolean logic performs a logical operation on one or more logic input and produces a single logic output. Here, we describe a microfluidic DNA computing processor performing Boolean logic operations for gene expression analysis and gene drug synthesis. Multiple cancer-related genes were used as input molecules. Their expression levels were identified by interacting with the computing related DNA strands, which were designed according to the sequences of cancer-related genes and the suicide gene. When all the expressions of the cancer-related genes fit in with the diagnostic criteria, positive diagnosis would be confirmed and then a complete suicide gene (gene drug) could be synthesized as an output molecule. Microfluidic chip was employed as an effective platform to realize the computing process by integrating multistep biochemical reactions involving hybridization, displacement, denaturalization, and ligation. By combining the specific design of the computing related molecules and the integrated functions of the microfluidics, the microfluidic DNA computing processor is able to analyze the multiple gene expressions simultaneously and realize the corresponding gene drug synthesis with simplicity and fast speed, which demonstrates the potential of this platform for DNA computing in biomedical applications.
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Xie H, Li B, Qin J, Huang Z, Zhu Y, Lin B. A splicing model-based DNA-computing approach on microfluidic chip. Electrophoresis 2009; 30:3514-8. [DOI: 10.1002/elps.200900323] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Li S, Thorsen T, Xu Z, Fang ZP, Zhao J, Yoon SF. Microvalve thickness and topography measurements in microfluidic devices by white-light confocal microscopy. APPLIED OPTICS 2009; 48:5088-5094. [PMID: 19767923 DOI: 10.1364/ao.48.005088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
A microvalve is a key part in a multilayer microfluidic device to control the fluid flow, and its thickness directly determines its performance. In this paper, a three-dimensional measurement technology using a white-light confocal microscope is developed for measuring both the topography and thickness of microvalves. The impact of system parameters and sample parameters on measurement accuracy is discussed in detail, particularly for measurement with a dry objective. With this technique, the microvalve thicknesses before and after bonding were characterized with submicrometer measurement sensitivity and about 1 microm measurement accuracy.
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Affiliation(s)
- Shiguang Li
- Singapore-Masschusetts Institute of Technology Alliance, N3.2-01-36, 65 Nanyang Drive, Singapore 637460.
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Immunomagnetic bead-based cell concentration microdevice for dilute pathogen detection. Biomed Microdevices 2009; 10:909. [PMID: 18677651 DOI: 10.1007/s10544-008-9206-3] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
A cell concentration microdevice for immunomagnetic pathogen isolation from a dilute sample is presented. Cells are driven by integrated on-chip pumps through a fluidized bed of immobilized immunomagnetic beads. Off-chip polymerase chain reaction and capillary electrophoretic analysis are used to determine capture efficiencies of E. coli and to optimize the system. Beads are immobilized after each split in a bifurcated channel system to ensure a balanced distribution of beads in all the capture channels. The addition of a pumping flutter step to repeatedly drive sample through the bead bed was found to enhance capture. Capture efficiencies of 70% and a limit of detection of 2 cfu/microL were achieved; specific capture of E. coli at a concentration of 100 cfu/microL in a 100-fold background of S. aureus is shown. This capture/concentration system is an important step in overcoming the macro-to-micro interface challenge in the development of microdevices for pathogen detection.
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Sieben VJ, Debes-Marun CS, Pilarski LM, Backhouse CJ. An integrated microfluidic chip for chromosome enumeration using fluorescence in situ hybridization. LAB ON A CHIP 2008; 8:2151-6. [PMID: 19023479 DOI: 10.1039/b812443d] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Fluorescence in situ hybridization (FISH) is a powerful technique for probing the genetic content of individual cells at the chromosomal scale. Conventional FISH techniques provide a sensitive diagnostic tool for the detection of chromosomal alterations on a cell-by-cell basis; however, the cost-per-test in terms of reagent and highly qualified labour has prevented its wide-spread utilization in clinical settings. Here, we address the inefficient use of labour with the first integrated and automated on-chip FISH implementation, one that requires only minutes of setup time from the technician. Our microfluidic chip has lowered the reagent use by 20-fold, decreased the labour time by 10-fold, and substantially reduced the amount of support equipment needed. We believe this cost-effective platform will make sensitive FISH techniques more accessible for routine clinical usage.
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Affiliation(s)
- Vincent J Sieben
- Department of Electrical and Computer Engineering, 2nd Floor ECERF, University of Alberta, Edmonton, CanadaT6G 2V4
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Hua Z, Pal R, Srivannavit O, Burns MA, Gulari E. A light writable microfluidic "flash memory": optically addressed actuator array with latched operation for microfluidic applications. LAB ON A CHIP 2008; 8:488-491. [PMID: 18305870 DOI: 10.1039/b712983a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
This paper presents a novel optically addressed microactuator array (microfluidic "flash memory") with latched operation. Analogous to the address-data bus mediated memory address protocol in electronics, the microactuator array consists of individual phase-change based actuators addressed by localized heating through focused light patterns (address bus), which can be provided by a modified projector or high power laser pointer. A common pressure manifold (data bus) for the entire array is used to generate large deflections of the phase change actuators in the molten phase. The use of phase change material as the working media enables latched operation of the actuator array. After the initial light "writing" during which the phase is temporarily changed to molten, the actuated status is self-maintained by the solid phase of the actuator without power and pressure inputs. The microfluidic flash memory can be re-configured by a new light illumination pattern and common pressure signal. The proposed approach can achieve actuation of arbitrary units in a large-scale array without the need for complex external equipment such as solenoid valves and electrical modules, which leads to significantly simplified system implementation and compact system size. The proposed work therefore provides a flexible, energy-efficient, and low cost multiplexing solution for microfluidic applications based on physical displacements. As an example, the use of the latched microactuator array as "normally closed" or "normally open" microvalves is demonstrated. The phase-change wax is fully encapsulated and thus immune from contamination issues in fluidic environments.
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Affiliation(s)
- Zhishan Hua
- Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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Horsman KM, Bienvenue JM, Blasier KR, Landers JP. Forensic DNA Analysis on Microfluidic Devices: A Review. J Forensic Sci 2007; 52:784-99. [PMID: 17553097 DOI: 10.1111/j.1556-4029.2007.00468.x] [Citation(s) in RCA: 109] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The advent of microfluidic technology for genetic analysis has begun to impact forensic science. Recent advances in microfluidic separation of short-tandem-repeat (STR) fragments has provided unprecedented potential for improving speed and efficiency of DNA typing. In addition, the analytical processes associated with sample preparation--which include cell sorting, DNA extraction, DNA quantitation, and DNA amplification--can all be integrated with the STR separation in a seamless manner. The current state of these microfluidic methods as well as their advantages and potential shortcomings are detailed. Recent advances in microfluidic device technology, as they pertain to forensic DNA typing, are discussed with a focus on the forensic community.
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Affiliation(s)
- Katie M Horsman
- Department of Chemistry, University of Virginia, Charlottesville, VA 22904, USA
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Lim CT, Zhang Y. Novel dome-shaped structures for high-efficiency patterning of individual microbeads in a microfluidic device. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2007; 3:573-9. [PMID: 17351990 DOI: 10.1002/smll.200600435] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Affiliation(s)
- Chee Tiong Lim
- Division of Bioengineering, Faculty of Engineering, Blk, E3 A-04, National University of Singapore, 9 Engineering Drive 1, Singapore 117576, Singapore
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Cost GJ, Cozzarelli NR. Directed assembly of DNA molecules via simultaneous ligation and digestion. Biotechniques 2007; 42:84, 86-9. [PMID: 17269489 DOI: 10.2144/000112283] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
DNA ligation is a routine laboratory practice, yet the yield of the desired product is often very low due to competing off-pathway reactions. The sensitivity of subsequent manipulations (e.g., selection via bacterial transformation) often obviates the need for a high yield of correctly ligated products. However the ability to perform high-yield, preparative-scale DNA ligations would benefit a number of downstream applications ranging from standard molecular cloning to biophysics and DNA computing. We describe here a ligation technique that specifically converts off-pathway ligation products back into substrate. We term this second-chance strategy enzymatic ligation assisted by nucleases (ELAN) and demonstrate the ordered assembly of four DNA fragments via simultaneous ligation and digestion in the presence of eight restriction enzymes. Use of ELAN increased the yield of the desired product by more than 30-fold.
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Affiliation(s)
- Gregory J Cost
- Department of Molecular and Cell Biology, University of California-Berkeley, Berkeley, CA 94720, USA.
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Lim CT, Zhang Y. Bead-based microfluidic immunoassays: The next generation. Biosens Bioelectron 2007; 22:1197-204. [PMID: 16857357 DOI: 10.1016/j.bios.2006.06.005] [Citation(s) in RCA: 168] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2006] [Revised: 05/23/2006] [Accepted: 06/07/2006] [Indexed: 10/24/2022]
Abstract
Microfluidic devices possess many advantages like high throughput, short analysis time, small volume and high sensitivity that fulfill all the important criteria of an immunoassay used for clinical diagnoses, environmental analyses and biochemical studies. These devices can be made from a few different materials, with polymers presently emerging as the most popular choice. Other than being optically clear, non-toxic and cheap, polymers can also be easily fabricated with a variety of techniques. In addition, there are many polymer surface modification methods available to improve the efficiency of these devices. Unfortunately, current microfluidic immunoassays have limited multiplexing capability compared to flow cytometric assays. Flow cytometry employ the use of encoded microbeads in contrast with normal or paramagnetic microbeads applied in current microfluidic devices. The encoded microbead is the key in providing multiplexing capability to the assay by allowing multi-analyte analysis. Using several unique sets of code, different analytes can be detected in a single assay by tracing the identity of individual beads. The same principle could be applied to microfluidic immunoassays in order to retain all the advantages of a fluidic device and significantly improve multiplexing capability.
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Affiliation(s)
- C T Lim
- Division of Bioengineering, Faculty of Engineering, Blk, EA-03-12, National University of Singapore, 9 Engineering Drive 1, Singapore 117576, Singapore
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Affiliation(s)
- Tomoya TACHI
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University
| | - Noritada KAJI
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University
- MEXT Innovative Research Center for Preventive Medical Engineering, Nagoya University
| | - Manabu TOKESHI
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University
- MEXT Innovative Research Center for Preventive Medical Engineering, Nagoya University
| | - Yoshinobu BABA
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University
- MEXT Innovative Research Center for Preventive Medical Engineering, Nagoya University
- Plasma Nanotechnology Research Center, Nagoya University
- Health Technology Research Center National Institute of Advanced Industrial Science and Technology (AIST)
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Macdonald J, Li Y, Sutovic M, Lederman H, Pendri K, Lu W, Andrews BL, Stefanovic D, Stojanovic MN. Medium scale integration of molecular logic gates in an automaton. NANO LETTERS 2006; 6:2598-603. [PMID: 17090098 DOI: 10.1021/nl0620684] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The assembly of molecular automata that perform increasingly complex tasks, such as game playing, presents an unbiased test of molecular computation. We now report a second-generation deoxyribozyme-based automaton, MAYA-II, which plays a complete game of tic-tac-toe according to a perfect strategy. In silicon terminology, MAYA-II represents the first "medium-scale integrated molecular circuit", integrating 128 deoxyribozyme-based logic gates, 32 input DNA molecules, and 8 two-channel fluorescent outputs across 8 wells.
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Affiliation(s)
- Joanne Macdonald
- National Chemical Bonding Center: Center for Molecular Cybernetics, Division of Experimental Therapeutics, Department of Medicine, Columbia University, New York, New York 10032, USA.
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Grover WH, Ivester RHC, Jensen EC, Mathies RA. Development and multiplexed control of latching pneumatic valves using microfluidic logical structures. LAB ON A CHIP 2006; 6:623-31. [PMID: 16652177 DOI: 10.1039/b518362f] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Novel latching microfluidic valve structures are developed, characterized, and controlled independently using an on-chip pneumatic demultiplexer. These structures are based on pneumatic monolithic membrane valves and depend upon their normally-closed nature. Latching valves consisting of both three- and four-valve circuits are demonstrated. Vacuum or pressure pulses as short as 120 ms are adequate to hold these latching valves open or closed for several minutes. In addition, an on-chip demultiplexer is demonstrated that requires only n pneumatic inputs to control 2(n-1) independent latching valves. These structures can reduce the size, power consumption, and cost of microfluidic analysis devices by decreasing the number of off-chip controllers. Since these valve assemblies can form the standard logic gates familiar in electronic circuit design, they should be useful in developing complex pneumatic circuits.
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Affiliation(s)
- William H Grover
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
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