1
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Li J, Hou S, Xie C. Characterizing the photodissociation dynamics of HPCO in the S1 band. J Chem Phys 2025; 162:074308. [PMID: 39968826 DOI: 10.1063/5.0253457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 01/31/2025] [Indexed: 02/20/2025] Open
Abstract
A full-dimensional potential energy surface (PES) represented by the neural network method for the first excited state S1(1A″) of HPCO is reported for the first time. The PES was constructed based on more than 51 000 ab initio points, which were calculated at the multi-reference configuration interaction level with Davidson correction using the augmented correlation consistent polarized valence triple zeta basis set. Based on the newly constructed PES, quasi-classical trajectory calculations were carried out to study the photodissociation dynamics of HPCO at the total energy ranging from 4.0 to 5.6 eV. At low total energies, the HP + CO product is dominant, while the product H + PCO becomes increasingly favored at higher energies. Furthermore, the translational energy distributions of two products are found to be energy-dependent. Owing to the strongly repulsive PES along the HP + CO dissociation pathway, the translational energy distributions of HP + CO are dominated by relatively higher energies in contrast to H + PCO. The diatomic products HP and CO are found to possess the vibrational distributions decaying monotonically with the vibrational quantum number and relatively cold rotational state distributions, consistent with the strongly repulsive potentials toward the HP + CO channel. In addition, the vibrational distributions of HP and CO are found to be quite similar due to their close frequencies, while the rotational distributions of CO have a much more highly excited rotational degree of freedom owing to its rotational constant approximately four times smaller than that of HP.
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Affiliation(s)
- Jiayuan Li
- Institute of Modern Physics, Shaanxi Key Laboratory for Theoretical Physics Frontiers, Northwest University, Xi'an, Shaanxi 710127, China
| | - Siting Hou
- Institute of Modern Physics, Shaanxi Key Laboratory for Theoretical Physics Frontiers, Northwest University, Xi'an, Shaanxi 710127, China
| | - Changjian Xie
- Institute of Modern Physics, Shaanxi Key Laboratory for Theoretical Physics Frontiers, Northwest University, Xi'an, Shaanxi 710127, China
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2
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Qian W, Lu B, Tan G, Rauhut G, Grützmacher H, Zeng X. Vibrational spectrum and photochemistry of phosphaketene HPCO. Phys Chem Chem Phys 2021; 23:19237-19243. [PMID: 34524290 DOI: 10.1039/d1cp02860j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The vibrational spectra of the simplest phosphaketene HPCO and its isotopologue DPCO in solid Ar-matrices at 12.0 K have been analyzed with the aid of the computations at the CCSD(T)-F12a/cc-pVTZ-F12 level using configuration-selective vibrational configuration interaction (VCI). In addition to the four IR fundamentals, four overtone and ten combination bands have been unambiguously identified. Furthermore, the photochemistry of HPCO in the matrix has been investigated for the first time. Upon UV-light irradiation (365 or 266 nm), CO-elimination occurs by forming the parent phosphinidene HP that can be trapped by ˙NO to yield the elusive phosphinimine-N-oxyl radical HPNO˙. In contrast, an excimer laser (193 nm) irradiation of HPCO causes additional decomposition to H˙ and ˙PCO with concomitant formation of the long-sought phosphaethyne HOCP.
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Affiliation(s)
- Weiyu Qian
- Department of Chemistry, Fudan University, 200433 Shanghai, China.
| | - Bo Lu
- Department of Chemistry, Fudan University, 200433 Shanghai, China.
| | - Gengwen Tan
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, 215123 Suzhou, China.
| | - Guntram Rauhut
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, Stuttgart 70569, Germany
| | | | - Xiaoqing Zeng
- Department of Chemistry, Fudan University, 200433 Shanghai, China.
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3
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Chu X, Song C, Yang Y, Zeng X. Oxidation of a phosphinidene oxide: formation of a dioxaphosphirane oxide with oxygen scrambling. Chem Commun (Camb) 2018; 55:245-248. [PMID: 30534675 DOI: 10.1039/c8cc08945k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The oxidation of a prototypical phosphinidene oxide FP[double bond, length as m-dash]O has been studied in O2-doped Ar and N2 matrices at 10 K. Upon 266 nm laser irradiation, FP[double bond, length as m-dash]O combines with O2 and yields the cyclic peroxide, dioxaphosphirane oxide FP([double bond, length as m-dash]O)(O2). Unexpected oxygen scrambling occurs during the oxygenation as evidenced by the observation of a 1 : 2 mixture of FP([double bond, length as m-dash]16O)(18O18O) and FP([double bond, length as m-dash]18O)(16O18O) when 18O2 was used. Quantum chemical calculations suggest that the scrambling happens via the intermediacy of the low-lying triplet FPO3 by passing minimum energy crossing points (MECPs). In addition, inorganic dioxophosphorane FP([double bond, length as m-dash]O)2 has been also identified among the oxidation products of FP[double bond, length as m-dash]O.
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Affiliation(s)
- Xianxu Chu
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China.
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4
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Rey A, Espinosa Ferao A, Streubel R. Quantum Chemical Calculations on CHOP Derivatives-Spanning the Chemical Space of Phosphinidenes, Phosphaketenes, Oxaphosphirenes, and COP - Isomers. Molecules 2018; 23:E3341. [PMID: 30562997 PMCID: PMC6321265 DOI: 10.3390/molecules23123341] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Revised: 12/06/2018] [Accepted: 12/16/2018] [Indexed: 12/04/2022] Open
Abstract
After many decades of intense research in low-coordinate phosphorus chemistry, the advent of Na[OCP] brought new stimuli to the field of CHOP isomers and derivatives thereof. The present theoretical study at the CCSD(T)/def2-TZVPP level describes the chemical space of CHOP isomers in terms of structures and potential energy surfaces, using oxaphosphirene as the starting point, but also covering substituted derivatives and COP- isomers. Bonding properties of the P⁻C, P⁻O, and C⁻O bonds in all neutral and anionic isomeric species are discussed on the basis of theoretical calculations using various bond strengths descriptors such as WBI and MBO, but also the Lagrangian kinetic energy density per electron as well as relaxed force constants. Ring strain energies of the superstrained 1H-oxaphosphirene and its barely strained oxaphosphirane-3-ylidene isomer were comparatively evaluated with homodesmotic and hyperhomodesmotic reactions. Furthermore, first time calculation of the ring strain energy of an anionic ring is described for the case of oxaphosphirenide.
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Affiliation(s)
- Alicia Rey
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Arturo Espinosa Ferao
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Campus de Espinardo, 30100 Murcia, Spain.
| | - Rainer Streubel
- Institut of Inorganic Chemistry, Rheinischen Friedrich-Wilhelms-Universiy of Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany.
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5
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Affiliation(s)
- Jose M. Goicoechea
- Department of Chemistry University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA Großbritannien
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6
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Goicoechea JM, Grützmacher H. The Chemistry of the 2-Phosphaethynolate Anion. Angew Chem Int Ed Engl 2018; 57:16968-16994. [PMID: 29770548 DOI: 10.1002/anie.201803888] [Citation(s) in RCA: 122] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Indexed: 11/07/2022]
Abstract
In all likelihood the first synthesis of the phosphaethynolate anion, PCO- , was performed in 1894 when NaPH2 was reacted with CO in an attempt to make Na(CP) accompanied by elimination of water. This reaction was repeated 117 years later when it was discovered that Na(OCP) and H2 are the products of this remarkable transformation. Li(OCP) was synthesized and fully characterized in 1992 but this salt proved to be too unstable to allow for a detailed investigation of its chemistry. It was not until the heavier analogues of this lithium salt were isolated, Na(OCP) and K(OCP) (both of which are remarkably stable and can be even dissolved in water), that the chemistry of this new functional group could be explored. Here we review the chemistry of the 2-phosphaethynolate anion, a heavier phosphorus-containing analogue of the cyanate anion, and describe the wide breadth of chemical transformations for which it has been thus far employed. Its use as a ligand, in decarbonylative and deoxygenative processes, and as a building block for novel heterocycles is described. In the mere twenty-six years since Becker first reported the isolation of this remarkable anion, it has become a fascinating reagent for the synthesis of a vast library of, often unprecedented, molecules and compounds.
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Affiliation(s)
- Jose M Goicoechea
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Hansjörg Grützmacher
- Department of Chemistry and Applied Biology, ETH Zürich, 8093, Zürich, Switzerland
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7
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Chu X, Yang Y, Lu B, Wu Z, Qian W, Song C, Xu X, Abe M, Zeng X. Methoxyphosphinidene and Isomeric Methylphosphinidene Oxide. J Am Chem Soc 2018; 140:13604-13608. [PMID: 30301345 DOI: 10.1021/jacs.8b09201] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A rare oxyphosphinidene (Me-OP) has been generated in the triplet ground state through either photolysis (266 nm) or flash-vacuum pyrolysis (FVP, 700 °C) of methoxydiazidophosphine MeOP(N3)2. Upon ArF laser irradiation (193 nm), an unprecedented isomerization from Me-OP to the long-sought methylphosphinidene oxide (Me-PO) occurs in cryogenic Ne- and N2-matrices. Alternatively, the latter can be efficiently generated through photolysis (193 nm) or FVP (ca. 700 °C) of methylphosphoryl diazide MeP(O)(N3)2, in which the elusive nitrene intermediate MeP(O)(N3)N in the triplet ground state has been also observed by IR (with 15N-labeling) and EPR (| D/ hc| = 1.545 cm-1 and | E/ hc| = 0.003 95 cm-1) spectroscopy.
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Affiliation(s)
- Xianxu Chu
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Yang Yang
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Bo Lu
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Zhuang Wu
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Weiyu Qian
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Chao Song
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Xinfang Xu
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
| | - Manabu Abe
- Department of Chemistry, Graduate School of Science , Hiroshima University , 1-3-1 Kagamiyama , Higashihiroshima , Hiroshima 739-8526 , Japan
| | - Xiaoqing Zeng
- College of Chemistry, Chemical Engineering and Materials Science , Soochow University , Suzhou 215123 , China
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8
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Frigge R, Zhu C, Turner AM, Abplanalp MJ, Sun BJ, Huang YS, Chang AHH, Kaiser RI. Synthesis of the hitherto elusive formylphosphine (HCOPH 2) in the interstellar medium - a molecule with an exotic phosphorus peptide bond. Chem Commun (Camb) 2018; 54:10152-10155. [PMID: 30132473 PMCID: PMC6340706 DOI: 10.1039/c8cc04125c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The formylphosphine (HCOPH2) molecule was detected in the gas phase via isomer selective photoionization reflectron time-of-flight mass spectrometry (PI-ReTOF-MS). Synthesized in carbon monoxide (CO)-phosphine ices (PH3) exposed to ionizing radiation, the formation mechanism involves an initial phosphorus-hydrogen bond rupture in phosphine yielding the phosphino radical (PH2) along with atomic hydrogen, addition of the suprathermal hydrogen atom to carbon monoxide leading to the formyl radical (HCO), and recombination of both radicals to formylphosphine (HCOPH2). This molecule represents the isovalent counterpart of the ubiquitous interstellar formamide (HCONH2). This study provides a fundamental framework to explore the synthesis and stability of the simplest isovalent counterpart of interstellar formamide (HCONH2) and suggests that formylphosphine (HCOPH2) should be detectable in the interstellar medium eventually providing a missing link between phosphorus-bearing complex organic molecules detected in the interstellar medium and on comet 67P/Churyumov-Gerasimenko.
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Affiliation(s)
- Robert Frigge
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Cheng Zhu
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Andrew M. Turner
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Matthew J. Abplanalp
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
| | - Bing-Jian Sun
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan.
| | - Ya-Syuan Huang
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan.
| | - Agnes H. H. Chang
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan.
| | - Ralf I. Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
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9
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Wilson DWN, Hinz A, Goicoechea JM. An Isolable Phosphaethynolatoborane and Its Reactivity. Angew Chem Int Ed Engl 2018; 57:2188-2193. [DOI: 10.1002/anie.201712624] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2017] [Revised: 01/05/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Daniel W. N. Wilson
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
| | - Alexander Hinz
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
| | - Jose M. Goicoechea
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
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10
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Wilson DWN, Hinz A, Goicoechea JM. An Isolable Phosphaethynolatoborane and Its Reactivity. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201712624] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Daniel W. N. Wilson
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
| | - Alexander Hinz
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
| | - Jose M. Goicoechea
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
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11
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Hinz A, Labbow R, Rennick C, Schulz A, Goicoechea JM. HPCO-A Phosphorus-Containing Analogue of Isocyanic Acid. Angew Chem Int Ed Engl 2017; 56:3911-3915. [PMID: 28252258 PMCID: PMC5396272 DOI: 10.1002/anie.201700368] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Indexed: 11/20/2022]
Abstract
We describe the isolation and spectroscopic characterization of the heavier phosphorus-containing analogue of isocyanic acid (HPCO), and its isotopologue (DPCO). This fundamental small molecule, which has been postulated to exist in interstellar space, has thus far only been observed at low gas phase concentrations or in inert gas matrices. In this report we describe its synthesis, spectroscopic properties, and reactivity in solution.
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Affiliation(s)
- Alexander Hinz
- Department of ChemistryUniversity of OxfordChemistry Research Laboratory12 Mansfield RoadOxfordOX1 3TAUK
| | - René Labbow
- Institut für ChemieUniversität RostockAlbert-Einstein-Strasse 3a18059RostockGermany
| | - Chris Rennick
- National Physics LaboratoryHampton RoadTeddington, MiddlesexTW11 0LWUK
| | - Axel Schulz
- Institut für ChemieUniversität RostockAlbert-Einstein-Strasse 3a18059RostockGermany
| | - Jose M. Goicoechea
- Department of ChemistryUniversity of OxfordChemistry Research Laboratory12 Mansfield RoadOxfordOX1 3TAUK
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12
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Hinz A, Labbow R, Rennick C, Schulz A, Goicoechea JM. HPCO-A Phosphorus-Containing Analogue of Isocyanic Acid. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201700368] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Alexander Hinz
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
| | - René Labbow
- Institut für Chemie; Universität Rostock; Albert-Einstein-Strasse 3a 18059 Rostock Germany
| | - Chris Rennick
- National Physics Laboratory; Hampton Road Teddington, Middlesex TW11 0LW UK
| | - Axel Schulz
- Institut für Chemie; Universität Rostock; Albert-Einstein-Strasse 3a 18059 Rostock Germany
| | - Jose M. Goicoechea
- Department of Chemistry; University of Oxford; Chemistry Research Laboratory; 12 Mansfield Road Oxford OX1 3TA UK
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13
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Suter R, Mei Y, Baker M, Benkő Z, Li Z, Grützmacher H. 2,4,6‐Tri(hydroxy)‐1,3,5‐triphosphinine, P
3
C
3
(OH)
3
: The Phosphorus Analogue of Cyanuric Acid. Angew Chem Int Ed Engl 2016; 56:1356-1360. [DOI: 10.1002/anie.201610156] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2016] [Revised: 12/05/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Riccardo Suter
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Yanbo Mei
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Matthew Baker
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Zoltan Benkő
- Budapest University of Technology and Economics Szent Gellért tér 4 1111 Budapest Hungary
| | - Zhongshu Li
- Lehn Institute of Functional materials (LIFM) Sun Yat-Sen University 510275 Guangzhou China
| | - Hansjörg Grützmacher
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
- Lehn Institute of Functional materials (LIFM) Sun Yat-Sen University 510275 Guangzhou China
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14
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Suter R, Mei Y, Baker M, Benkő Z, Li Z, Grützmacher H. 2,4,6‐Tri(hydroxy)‐1,3,5‐triphosphinine, P
3
C
3
(OH)
3
: The Phosphorus Analogue of Cyanuric Acid. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201610156] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Riccardo Suter
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Yanbo Mei
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Matthew Baker
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
| | - Zoltan Benkő
- Budapest University of Technology and Economics Szent Gellért tér 4 1111 Budapest Hungary
| | - Zhongshu Li
- Lehn Institute of Functional materials (LIFM) Sun Yat-Sen University 510275 Guangzhou China
| | - Hansjörg Grützmacher
- Department of Chemistry and Applied Biosciences ETH Zurich 8093 Zurich Switzerland
- Lehn Institute of Functional materials (LIFM) Sun Yat-Sen University 510275 Guangzhou China
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15
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Viana RB, Guimarães AR, de Souza AR, da Silva ABF. Molecular properties of the PCO radical: heat of formation and the isomerization pathways. J Mol Model 2014; 20:2074. [PMID: 24504453 DOI: 10.1007/s00894-014-2074-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Accepted: 11/12/2013] [Indexed: 11/29/2022]
Abstract
The potential energy surface of [P,C,O] system in the ground state was investigated by quantum chemical methods. Four different isomers were characterized at the B3LYP/aug-cc-pVTZ: COP (i1), cPCO (i2), PCO (i3), and CPO (i4). The linear species i3 is the global minimum in the ground state surface, while i4 is a bent structure, and i2 is a cyclic isomer. In view to evaluate the bond nature of each isomer, a QTAIM and a NBO analyses were applied. The triangular species presents a ring critical point which confirms its cyclic structure instead of a T-shape one. The stability increases in the following order: i3 > i2 > i1 > i4. The energy gap between i3 and i2 ranges from 49.20 to 51.15 kcal mol(-1). The reaction barrier energies that converge into the direction of i3 showed values around 10 kcal mol(-1), while the reverse barriers are considerably large (62.85 kcal mol(-1)). The i3 heat of formation at 298 K ranges from 11.83 to 19.41 kcal mol(-1).
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Affiliation(s)
- Rommel B Viana
- Instituto de Química de São Carlos, Universidade de São Paulo, USP, São Carlos, SP, Brasil,
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16
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Bacchus-Montabonel MC. Looking at radiation damage on prebiotic building blocks. J Phys Chem A 2013; 117:14169-75. [PMID: 24295208 DOI: 10.1021/jp4102948] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A number of complex organic molecules have been detected in the interstellar medium, as well as in meteorites or comets. Among them, some exobiologic-relevant molecules have attracted particular interest. In the hypothesis of an exogen transport of prebiotic building blocks at the origin of life, the survival of such species and particularly their resistance to the solar UV radiation or cosmic rays is a key issue. For that purpose, we have performed a theoretical approach of the charge transfer dynamics induced by collision of protons with nucleobases and the 2-deoxy-d-ribose sugar moiety in a wide collision energy range. Calculations have been carried out by means of ab initio quantum chemistry molecular methods and compared to previous theoretical results using carbon projectile ions. Qualitative trends can be exhibited on DNA or RNA building blocks damage, which may concern studies on prebiotic species under spatial radiation.
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17
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Rovibrational interactions in linear triatomic molecules: a theoretical study in curvilinear vibrational coordinates. Struct Chem 2012. [DOI: 10.1007/s11224-012-0059-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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18
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Cimas Á, Rayón VM, Largo A. Computational study of the reaction of P+ with acetylene: does spin-crossing play a significant role? J Phys Chem A 2012; 116:3014-22. [PMID: 22352296 DOI: 10.1021/jp2123604] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A computational study of the reaction of P(+)((3)P) with acetylene has been carried out. The only exothermic products correlating with the reactants are PCCH(+)((2)Π) + H((2)S). Two different pathways leading to these products that are apparently barrier-free have been found. Both pathways involve isomerization into open-chain intermediates followed by direct elimination of a hydrogen atom. The possibility of spin-crossing has been considered because the species on the singlet surface are considerably more stable than those on the triplet one. On the singlet surface, there are other possible channels for the reaction, namely, cyclic PC(2)H(+)((2)A') + H((2)S) and CCP(+)((1)Σ) + H(2) ((1)Σ(g)(+)). A computational kinetic study shows that, in agreement with the experimental evidence, the major products are PCCH(+)((2)Π) + H((2)S) at all temperatures. Only at very high temperatures is CCP(+)((1)Σ) + H(2) ((1)Σ(g)(+)) formed in non-negligible amounts. Therefore, only PCCH(+) should be formed in the interstellar medium.
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Affiliation(s)
- Álvaro Cimas
- Centro de Investigação em Química, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade do Porto, 4169-007 Porto, Portugal.
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19
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Toulouze M, Pilmé J, Pauzat F, Ellinger Y. Arsenic in prebiotic species: a theoretical approach. Phys Chem Chem Phys 2012; 14:10515-22. [DOI: 10.1039/c2cp41042g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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