1
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Li Y, Wu M, Fu Y, Xue J, Yuan F, Qu T, Rissanou AN, Wang Y, Li X, Hu H. Therapeutic stapled peptides: Efficacy and molecular targets. Pharmacol Res 2024; 203:107137. [PMID: 38522761 DOI: 10.1016/j.phrs.2024.107137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 03/06/2024] [Accepted: 03/06/2024] [Indexed: 03/26/2024]
Abstract
Peptide stapling, by employing a stable, preformed alpha-helical conformation, results in the production of peptides with improved membrane permeability and enhanced proteolytic stability, compared to the original peptides, and provides an effective solution to accelerate the rapid development of peptide drugs. Various reviews present peptide stapling chemistries, anchoring residues and one- or two-component cyclization, however, therapeutic stapled peptides have not been systematically summarized, especially focusing on various disease-related targets. This review highlights the latest advances in therapeutic peptide drug development facilitated by the application of stapling technology, including different stapling techniques, synthetic accessibility, applicability to biological targets, potential for solving biological problems, as well as the current status of development. Stapled peptides as therapeutic drug candidates have been classified and analysed mainly by receptor- and ligand-based stapled peptide design against various diseases, including cancer, infectious diseases, inflammation, and diabetes. This review is expected to provide a comprehensive reference for the rational design of stapled peptides for different diseases and targets to facilitate the development of therapeutic peptides with enhanced pharmacokinetic and biological properties.
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Affiliation(s)
- Yulei Li
- School of Pharmaceutical Sciences & Institute of Materia Medica, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong 250117, China.
| | - Minghao Wu
- School of Medicine, Shanghai University, 99 Shangda Road, Shanghai 200444, China
| | - Yinxue Fu
- School of Pharmaceutical Sciences & Institute of Materia Medica, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong 250117, China
| | - Jingwen Xue
- School of Pharmaceutical Sciences & Institute of Materia Medica, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong 250117, China
| | - Fei Yuan
- School of Pharmaceutical Sciences & Institute of Materia Medica, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong 250117, China
| | - Tianci Qu
- School of Pharmaceutical Sciences & Institute of Materia Medica, Shandong First Medical University & Shandong Academy of Medical Sciences, Jinan, Shandong 250117, China
| | - Anastassia N Rissanou
- Theoretical & Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Avenue, Athens 11635, Greece
| | - Yilin Wang
- Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, 131 Dong'an Road, Shanghai 200032, China
| | - Xiang Li
- School of Pharmacy, Second Military Medical University, 325 Guohe Road, Shanghai, 200433, China.
| | - Honggang Hu
- School of Medicine, Shanghai University, 99 Shangda Road, Shanghai 200444, China.
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2
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Ricardo MG, Vázquéz-Mena Y, Iglesias-Morales Y, Wessjohann LA, Rivera DG. On the scope of the double Ugi multicomponent stapling to produce helical peptides. Bioorg Chem 2021; 113:104987. [PMID: 34022444 DOI: 10.1016/j.bioorg.2021.104987] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 04/19/2021] [Accepted: 05/08/2021] [Indexed: 11/15/2022]
Abstract
The stabilization of helical structures by peptide stapling approaches is now a mature technology capable to provide a variety of biomedical applications. Recently, it was shown that multicomponent macrocyclization is not only an effective way to introduce conformational constraints but it also allows to incorporate additional functionalities to the staple moiety in a one-pot process. This work investigates the scope of the double Ugi multicomponent stapling approach in its capacity to produce helical peptides from unstructured sequences. For this, three different stapling combinations were implemented and the CD spectra of the cyclic peptides were measured to determine the effect of the multicomponent macrocyclization on the resulting secondary structure. A new insight into some structural factors influencing the helicity type and content is provided, along with new prospects on the utilization of this methodology to diversify the molecular tethers linking the amino acid side chains.
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Affiliation(s)
- Manuel G Ricardo
- Laboratory of Synthetic and Biomolecular Chemistry, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba; Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany
| | - Yadiel Vázquéz-Mena
- Laboratory of Synthetic and Biomolecular Chemistry, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Yuleidys Iglesias-Morales
- Laboratory of Synthetic and Biomolecular Chemistry, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany.
| | - Daniel G Rivera
- Laboratory of Synthetic and Biomolecular Chemistry, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba; Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany.
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3
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Ricardo MG, Ali AM, Plewka J, Surmiak E, Labuzek B, Neochoritis CG, Atmaj J, Skalniak L, Zhang R, Holak TA, Groves M, Rivera DG, Dömling A. Multicomponent Peptide Stapling as a Diversity‐Driven Tool for the Development of Inhibitors of Protein–Protein Interactions. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201916257] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Manuel G. Ricardo
- Faculty of Chemistry, Center for Natural Product ResearchUniversity of Havana Cuba
| | - Ameena M. Ali
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
| | - Jacek Plewka
- Faculty of ChemistryJagiellonian University Krakow Poland
| | - Ewa Surmiak
- Faculty of ChemistryJagiellonian University Krakow Poland
| | - Beata Labuzek
- Faculty of ChemistryJagiellonian University Krakow Poland
| | - Constantinos G. Neochoritis
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
- Department of ChemistryUniversity of Crete Greece
| | - Jack Atmaj
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
- Faculty of ChemistryJagiellonian University Krakow Poland
| | | | - Ran Zhang
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
| | - Tad A. Holak
- Faculty of ChemistryJagiellonian University Krakow Poland
| | - Matthew Groves
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
| | - Daniel G. Rivera
- Faculty of Chemistry, Center for Natural Product ResearchUniversity of Havana Cuba
| | - Alexander Dömling
- Department of PharmacyDrug Design group, University of Groningen The Netherlands
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4
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Ricardo MG, Ali AM, Plewka J, Surmiak E, Labuzek B, Neochoritis CG, Atmaj J, Skalniak L, Zhang R, Holak TA, Groves M, Rivera DG, Dömling A. Multicomponent Peptide Stapling as a Diversity-Driven Tool for the Development of Inhibitors of Protein-Protein Interactions. Angew Chem Int Ed Engl 2020; 59:5235-5241. [PMID: 31944488 DOI: 10.1002/anie.201916257] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Indexed: 12/12/2022]
Abstract
Stapled peptides are chemical entities in-between biologics and small molecules, which have proven to be the solution to high affinity protein-protein interaction antagonism, while keeping control over pharmacological performance such as stability and membrane penetration. We demonstrate that the multicomponent reaction-based stapling is an effective strategy for the development of α-helical peptides with highly potent dual antagonistic action of MDM2 and MDMX binding p53. Such a potent inhibitory activity of p53-MDM2/X interactions was assessed by fluorescence polarization, microscale thermophoresis, and 2D NMR, while several cocrystal structures with MDM2 were obtained. This MCR stapling protocol proved efficient and versatile in terms of diversity generation at the staple, as evidenced by the incorporation of both exo- and endo-cyclic hydrophobic moieties at the side chain cross-linkers. The interaction of the Ugi-staple fragments with the target protein was demonstrated by crystallography.
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Affiliation(s)
- Manuel G Ricardo
- Faculty of Chemistry, Center for Natural Product Research, University of Havana, Cuba
| | - Ameena M Ali
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands
| | - Jacek Plewka
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Ewa Surmiak
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Beata Labuzek
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Constantinos G Neochoritis
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands.,Department of Chemistry, University of, Crete, Greece
| | - Jack Atmaj
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands.,Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Lukasz Skalniak
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Ran Zhang
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands
| | - Tad A Holak
- Faculty of Chemistry, Jagiellonian University, Krakow, Poland
| | - Matthew Groves
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands
| | - Daniel G Rivera
- Faculty of Chemistry, Center for Natural Product Research, University of Havana, Cuba
| | - Alexander Dömling
- Department of Pharmacy, Drug Design group, University of, Groningen, The Netherlands
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5
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Liao HY, Kang LQ, Zhang SS, Yan JH. Green synthesis of polyhydroquinolines catalyzed by silica‐supported ionic liquid Si–[SbSipim][PF 6]. J CHIN CHEM SOC-TAIP 2019. [DOI: 10.1002/jccs.201800301] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Hui Ying Liao
- School of Chemical and Environmental EngineeringShanghai Institute of Technology Shanghai China
| | - Li Qin Kang
- School of Chemical and Environmental EngineeringShanghai Institute of Technology Shanghai China
| | - Shan Shan Zhang
- School of Chemical and Environmental EngineeringShanghai Institute of Technology Shanghai China
| | - Jia Hui Yan
- School of Chemical and Environmental EngineeringShanghai Institute of Technology Shanghai China
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6
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Reguera L, Attorresi CI, Ramírez JA, Rivera DG. Steroid diversification by multicomponent reactions. Beilstein J Org Chem 2019; 15:1236-1256. [PMID: 31293671 PMCID: PMC6604710 DOI: 10.3762/bjoc.15.121] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 05/14/2019] [Indexed: 12/19/2022] Open
Abstract
Reports on structural diversification of steroids by means of multicomponent reactions (MCRs) have significantly increased over the last decade. This review covers the most relevant strategies dealing with the use of steroidal substrates in MCRs, including the synthesis of steroidal heterocycles and macrocycles as well as the conjugation of steroids to amino acids, peptides and carbohydrates. We demonstrate that steroids are available with almost all types of MCR reactive functionalities, e.g., carbonyl, carboxylic acid, alkyne, amine, isocyanide, boronic acid, etc., and that steroids are suitable starting materials for relevant MCRs such as those based on imine and isocyanide. The focus is mainly posed on proving the amenability of MCRs for the diversity-oriented derivatization of naturally occurring steroids and the construction of complex steroid-based platforms for drug discovery, chemical biology and supramolecular chemistry applications.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Cecilia I Attorresi
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Javier A Ramírez
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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7
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Reguera L, Rivera DG. Multicomponent Reaction Toolbox for Peptide Macrocyclization and Stapling. Chem Rev 2019; 119:9836-9860. [PMID: 30990310 DOI: 10.1021/acs.chemrev.8b00744] [Citation(s) in RCA: 182] [Impact Index Per Article: 36.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In the past decade, multicomponent reactions have experienced a renaissance as powerful peptide macrocyclization tools enabling the rapid creation of skeletal complexity and diversity with low synthetic cost. This review provides both a historical and modern overview of the development of the peptide multicomponent macrocyclization as a strategy capable to compete with the classic peptide cyclization methods in terms of chemical efficiency and synthetic scope. We prove that the utilization of multicomponent reactions for cyclizing peptides by either their termini or side chains provides a key advantage over those more established methods; that is, the possibility to explore the cyclic peptide chemotype space not only at the amino acid sequence but also at the ring-forming moiety. Owing to its multicomponent nature, this type of peptide cyclization process is well-suited to generate diversity at both the endo- and exo-cyclic fragments formed during the ring-closing step, which stands as a distinctive and useful characteristic for the creation and screening of cyclic peptide libraries. Examples of the novel multicomponent peptide stapling approach and heterocycle ring-forming macrocyclizations are included, along with multicomponent methods incorporating macrocyclization handles and the one-pot syntheses of macromulticyclic peptide cages. Interesting applications of this strategy in the field of drug discovery and chemical biology are provided.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
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8
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Barreto ADFS, Andrade CKZ. Synthesis of (macro)heterocycles by consecutive/repetitive isocyanide-based multicomponent reactions. Beilstein J Org Chem 2019; 15:906-930. [PMID: 31164928 PMCID: PMC6541343 DOI: 10.3762/bjoc.15.88] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 03/27/2019] [Indexed: 12/13/2022] Open
Abstract
Isocyanide-based multicomponent reactions are a versatile tool in the synthesis of heterocycles. This review describes recently developed approaches based on the combination of consecutive or repetitive isocyanide-based multicomponent reactions for the synthesis of structurally diverse heterocycles. These strategies have also allowed the synthesis of a plethora of macroheterocycles in a reduced number of steps.
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Affiliation(s)
- Angélica de Fátima S Barreto
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
| | - Carlos Kleber Z Andrade
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
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9
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Vasco AV, Méndez Y, Porzel A, Balbach J, Wessjohann LA, Rivera DG. A Multicomponent Stapling Approach to Exocyclic Functionalized Helical Peptides: Adding Lipids, Sugars, PEGs, Labels, and Handles to the Lactam Bridge. Bioconjug Chem 2018; 30:253-259. [DOI: 10.1021/acs.bioconjchem.8b00906] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Aldrin V. Vasco
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Yanira Méndez
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Andrea Porzel
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Jochen Balbach
- Institute of Physics/Biophysics and Center for Structural and Dynamics of Proteins, Martin Luther University Halle-Wittenberg, D-06120, Halle (Saale), Germany
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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10
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201610801] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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11
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017; 56:3501-3505. [DOI: 10.1002/anie.201610801] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 01/24/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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12
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Morejón MC, Laub A, Kaluđerović GN, Puentes AR, Hmedat AN, Otero-González AJ, Rivera DG, Wessjohann LA. A multicomponent macrocyclization strategy to natural product-like cyclic lipopeptides: synthesis and anticancer evaluation of surfactin and mycosubtilin analogues. Org Biomol Chem 2017; 15:3628-3637. [DOI: 10.1039/c7ob00459a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Two birds in one shot: oligopeptides can be cyclized and lipidated in one step with multicomponent reactions.
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Affiliation(s)
- Micjel C. Morejón
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
- Center for Natural Products Research
| | - Annegret Laub
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Goran N. Kaluđerović
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Alfredo R. Puentes
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
- Center for Natural Products Research
| | - Ali N. Hmedat
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | | | - Daniel G. Rivera
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
- Center for Natural Products Research
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
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13
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Diels–Alder reaction of two green chiral precursors. Approach to natural product like structures. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.09.031] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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14
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Morejón MC, Laub A, Westermann B, Rivera DG, Wessjohann LA. Solution- and Solid-Phase Macrocyclization of Peptides by the Ugi-Smiles Multicomponent Reaction: Synthesis of N-Aryl-Bridged Cyclic Lipopeptides. Org Lett 2016; 18:4096-9. [PMID: 27505031 DOI: 10.1021/acs.orglett.6b02001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A new multicomponent methodology for the solution- and solid-phase macrocyclization of peptides is described. The approach comprises the utilization of the Ugi-Smiles reaction for the cyclization of 3-nitrotyrosine-containing peptides either by the N-terminus or the lysine side-chain amino groups. Both the on-resin and solution cyclizations took place with good to excellent efficiency in the presence of an aldehyde and a lipidic isocyanide, while the use of paraformaldehyde required an aminocatalysis-mediated imine formation prior to the on-resin Ugi-Smiles ring closure. The introduction of a turn motif in the peptide sequence facilitated the cyclization step, shortened the reaction time, and delivered crude products with >90% purity. This powerful method provided a variety of structurally novel N-aryl-bridged cyclic lipopeptides occurring as single atropisomers.
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Affiliation(s)
- Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Annegret Laub
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
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15
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Wessjohann LA, Morejón MC, Ojeda GM, Rhoden CRB, Rivera DG. Applications of Convertible Isonitriles in the Ligation and Macrocyclization of Multicomponent Reaction-Derived Peptides and Depsipeptides. J Org Chem 2016; 81:6535-45. [PMID: 27390908 DOI: 10.1021/acs.joc.6b01150] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Peptide ligation and macrocyclization are among the most relevant approaches in the field of peptide chemistry. Whereas a variety of strategies relying on coupling reagents and native chemical ligation are available, there is a continuous need for efficient peptide ligation and cyclization methods. Herein we report on the utilization of convertible isonitriles as effective synthetic tools for the ligation and macrocyclization of peptides arising from isocyanide-based multicomponent reactions. The strategy relies on the use of convertible isonitriles-derived from Fukuyama amines-and peptide carboxylic acids in Ugi and Passerini reactions to afford N-alkylated peptides and depsipeptides, respectively, followed by conversion of the C-terminal amide onto either N-peptidoacyl indoles or pyrroles. Such activated peptides proved efficient in the ligation to peptidic, lipidic and fluorescently labeled amines and in macrocyclization protocols. As a result, a wide set of N-substituted peptides (with methyl, glycosyl and amino acids as N-substituents), cyclic N-methylated peptides and a depsipeptide were produced in good yields using conditions that involve either classical heating or microwave irradiation. This report improves the repertoire of peptide covalent modification methods by exploiting the synthetic potential of multicomponent reactions and convertible isonitriles.
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Affiliation(s)
- Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Gerardo M Ojeda
- Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Cristiano R B Rhoden
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
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16
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Stucchi M, Lesma G. Split- UgiReaction with Chiral Compounds: Synthesis of Piperazine- and Bispidine-Based Peptidomimetics. Helv Chim Acta 2016. [DOI: 10.1002/hlca.201500505] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Mattia Stucchi
- Dipartimento di Chimica; Università degli Studi di Milano; via Golgi 19 IT-20133 Milan
| | - Giordano Lesma
- Dipartimento di Chimica; Università degli Studi di Milano; via Golgi 19 IT-20133 Milan
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17
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Szczepaniak G, Urbaniak K, Wierzbicka C, Kosiński K, Skowerski K, Grela K. High-Performance Isocyanide Scavengers for Use in Low-Waste Purification of Olefin Metathesis Products. CHEMSUSCHEM 2015; 8:4139-48. [PMID: 26556779 PMCID: PMC4693448 DOI: 10.1002/cssc.201500784] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Indexed: 05/11/2023]
Abstract
Three isocyanides containing a tertiary nitrogen atom were investigated for use as small-molecule ruthenium scavenging agents in the workup of olefin metathesis reactions. The proposed compounds are odorless, easy to obtain, and highly effective in removing metal residues, sometimes bringing the metal content below 0.0015 ppm. The most successful of the tested compounds, II, performs very well, even with challenging polar products. The performance of these scavengers is compared and contrasted with other known techniques, such as silica gel filtration and the use of self-scavenging catalysts. As a result, a new hybrid purification method is devised, which gives better results than using either a self-scavenging catalyst or a scavenger alone. Additionally, isocyanide II is shown to be a deactivating (reaction quenching) agent for olefin metathesis and superior to ethyl vinyl ether.
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Affiliation(s)
- Grzegorz Szczepaniak
- Biological and Chemical Research Centre, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089, Warsaw, Poland.
| | | | | | - Krzysztof Kosiński
- Biological and Chemical Research Centre, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089, Warsaw, Poland
| | | | - Karol Grela
- Biological and Chemical Research Centre, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089, Warsaw, Poland.
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18
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Vasco AV, Pérez CS, Morales FE, Garay HE, Vasilev D, Gavín JA, Wessjohann LA, Rivera DG. Macrocyclization of Peptide Side Chains by the Ugi Reaction: Achieving Peptide Folding and Exocyclic N-Functionalization in One Shot. J Org Chem 2015; 80:6697-707. [DOI: 10.1021/acs.joc.5b00858] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Aldrin V. Vasco
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
- Facultad
de Ingeniería Química, Instituto Superior Politécnico José Antonio Echeverría, CUJAE, Calle 114 # 11901, 11500, La Habana, Cuba
| | - Carlos S. Pérez
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Fidel E. Morales
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Hilda E. Garay
- Synthetic Peptides
Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Dimitar Vasilev
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - José A. Gavín
- Instituto
Universitario de Bioorgánica Antonio González and Departamento
de Química Orgánica, Universidad de La Laguna, 38206 La Laguna, Tenerife, Spain
| | - Ludger A. Wessjohann
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - Daniel G. Rivera
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
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19
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Morales FE, Garay HE, Muñoz DF, Augusto YE, Otero-González AJ, Reyes Acosta O, Rivera DG. Aminocatalysis-Mediated on-Resin Ugi Reactions: Application in the Solid-Phase Synthesis of N-Substituted and Tetrazolo Lipopeptides and Peptidosteroids. Org Lett 2015; 17:2728-31. [PMID: 25994574 DOI: 10.1021/acs.orglett.5b01147] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A new solid-phase protocol for the synthesis of N-substituted and tetrazolo peptides is described. The strategy relies on the combination of aminocatalysis-mediated on-resin Ugi reactions and peptide couplings for the N-alkylation of peptides at selected sites, including the N-terminal double lipidation, the simultaneous lipidation/biotinylation, and the steroid/lipid conjugation via tetrazole ring formation. The solid-phase Ugi four-component reactions were enabled by on-resin transimination steps prior to addition of the acid and isocyanide components. The strategy proved to be suitable for the feasible incorporation of complex N-substituents at both termini and at internal positions, which is not easily achievable by other solid-phase methods.
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Affiliation(s)
- Fidel E Morales
- †Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba.,‡Synthetic Peptides Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Hilda E Garay
- ‡Synthetic Peptides Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Daniela F Muñoz
- †Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Yarelys E Augusto
- †Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | | | - Osvaldo Reyes Acosta
- ‡Synthetic Peptides Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Daniel G Rivera
- †Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
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20
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Voigt B, Linke M, Mahrwald R. Multicomponent Cascade Reactions of Unprotected Carbohydrates and Amino Acids. Org Lett 2015; 17:2606-9. [DOI: 10.1021/acs.orglett.5b00887] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Benjamin Voigt
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Michael Linke
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Rainer Mahrwald
- Humboldt-Universität zu Berlin, Institut für Chemie, Brook-Taylor-Straße 2, 12489 Berlin, Germany
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21
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Salvador CEM, Pieber B, Neu PM, Torvisco A, Kleber Z Andrade C, Kappe CO. A sequential Ugi multicomponent/Cu-catalyzed azide-alkyne cycloaddition approach for the continuous flow generation of cyclic peptoids. J Org Chem 2015; 80:4590-602. [PMID: 25842982 DOI: 10.1021/acs.joc.5b00445] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The development of a continuous flow multistep strategy for the synthesis of linear peptoids and their subsequent macrocyclization via Click chemistry is described. The central transformation of this process is an Ugi four-component reaction generating the peptidomimetic core structure. In order to avoid exposure to the often toxic and malodorous isocyanide building blocks, the continuous approach was telescoped by the dehydration of the corresponding formamide. In a concurrent operation, the highly energetic azide moiety required for the subsequent intramolecular copper-catalyzed azide-alkyne cycloaddition (Click reaction) was installed by nucleophilic substitution from a bromide precursor. All steps yielding to the linear core structures can be conveniently coupled without the need for purification steps resulting in a single process generating the desired peptidomimetics in good to excellent yields within a 25 min reaction time. The following macrocyclization was realized in a coil reactor made of copper without any additional additive. A careful process intensification study demonstrated that this transformation occurs quantitatively within 25 min at 140 °C. Depending on the resulting ring strain, either a dimeric or a monomeric form of the cyclic product was obtained.
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Affiliation(s)
- Carlos Eduardo M Salvador
- †Institute of Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.,‡Laboratório de Química Metodológica e Orgânica Sintética, Instituto de Química, Universidade de Brasília, Campus Universitário Darcy Ribeiro, C.P. 4478, 70904-970, Brasília-DF, Brazil
| | - Bartholomäus Pieber
- †Institute of Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria
| | - Philipp M Neu
- †Institute of Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria
| | - Ana Torvisco
- §Institute of Inorganic Chemistry, Graz University of Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Carlos Kleber Z Andrade
- ‡Laboratório de Química Metodológica e Orgânica Sintética, Instituto de Química, Universidade de Brasília, Campus Universitário Darcy Ribeiro, C.P. 4478, 70904-970, Brasília-DF, Brazil
| | - C Oliver Kappe
- †Institute of Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria
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22
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Ricardo MG, Morales FE, Garay H, Reyes O, Vasilev D, Wessjohann LA, Rivera DG. Bidirectional macrocyclization of peptides by double multicomponent reactions. Org Biomol Chem 2015; 13:438-46. [DOI: 10.1039/c4ob01915f] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Peptide macrocyclization by multicomponent reactions.
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Affiliation(s)
- Manuel G. Ricardo
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
| | - Fidel E. Morales
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
| | - Hilda Garay
- Laboratory of Peptide Synthesis
- Physical-Chemistry Division
- Center for Genetic Engineering and Biotechnology
- La Habana
- Cuba
| | - Osvaldo Reyes
- Laboratory of Peptide Synthesis
- Physical-Chemistry Division
- Center for Genetic Engineering and Biotechnology
- La Habana
- Cuba
| | - Dimitar Vasilev
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Daniel G. Rivera
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
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23
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24
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Rizzo S, Wakchaure V, Waldmann H. Natural Product-Derived and Natural Product-Inspired Compound Collections. METHODS AND PRINCIPLES IN MEDICINAL CHEMISTRY 2014. [DOI: 10.1002/9783527676545.ch02] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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25
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Koopmanschap G, Ruijter E, Orru RVA. Isocyanide-based multicomponent reactions towards cyclic constrained peptidomimetics. Beilstein J Org Chem 2014; 10:544-98. [PMID: 24605172 PMCID: PMC3943360 DOI: 10.3762/bjoc.10.50] [Citation(s) in RCA: 192] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Accepted: 01/24/2014] [Indexed: 12/16/2022] Open
Abstract
In the recent past, the design and synthesis of peptide mimics (peptidomimetics) has received much attention. This because they have shown in many cases enhanced pharmacological properties over their natural peptide analogues. In particular, the incorporation of cyclic constructs into peptides is of high interest as they reduce the flexibility of the peptide enhancing often affinity for a certain receptor. Moreover, these cyclic mimics force the molecule into a well-defined secondary structure. Constraint structural and conformational features are often found in biological active peptides. For the synthesis of cyclic constrained peptidomimetics usually a sequence of multiple reactions has been applied, which makes it difficult to easily introduce structural diversity necessary for fine tuning the biological activity. A promising approach to tackle this problem is the use of multicomponent reactions (MCRs), because they can introduce both structural diversity and molecular complexity in only one step. Among the MCRs, the isocyanide-based multicomponent reactions (IMCRs) are most relevant for the synthesis of peptidomimetics because they provide peptide-like products. However, these IMCRs usually give linear products and in order to obtain cyclic constrained peptidomimetics, the acyclic products have to be cyclized via additional cyclization strategies. This is possible via incorporation of bifunctional substrates into the initial IMCR. Examples of such bifunctional groups are N-protected amino acids, convertible isocyanides or MCR-components that bear an additional alkene, alkyne or azide moiety and can be cyclized via either a deprotection-cyclization strategy, a ring-closing metathesis, a 1,3-dipolar cycloaddition or even via a sequence of multiple multicomponent reactions. The sequential IMCR-cyclization reactions can afford small cyclic peptide mimics (ranging from four- to seven-membered rings), medium-sized cyclic constructs or peptidic macrocycles (>12 membered rings). This review describes the developments since 2002 of IMCRs-cyclization strategies towards a wide variety of small cyclic mimics, medium sized cyclic constructs and macrocyclic peptidomimetics.
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Affiliation(s)
- Gijs Koopmanschap
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Eelco Ruijter
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Romano VA Orru
- Department of Chemistry & Pharmaceutical Sciences, Amsterdam Institute of Molecules, Medicines and Systems, VU University Amsterdam, de Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
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26
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Rizzo S, Waldmann H. Development of a Natural-Product-Derived Chemical Toolbox for Modulation of Protein Function. Chem Rev 2014; 114:4621-39. [DOI: 10.1021/cr400442v] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Stefano Rizzo
- Abteilung
Chemische Biologie, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany
- Technische Universität Dortmund, Fakultät
für Chemie und Chemische Biologie, Otto-Hahn-Strasse 6, 44221 Dortmund, Germany
| | - Herbert Waldmann
- Abteilung
Chemische Biologie, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany
- Technische Universität Dortmund, Fakultät
für Chemie und Chemische Biologie, Otto-Hahn-Strasse 6, 44221 Dortmund, Germany
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27
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Rivera DG, León F, Concepción O, Morales FE, Wessjohann LA. A multiple multicomponent approach to chimeric peptide-peptoid podands. Chemistry 2013; 19:6417-28. [PMID: 23512744 DOI: 10.1002/chem.201201591] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2012] [Revised: 01/31/2013] [Indexed: 11/08/2022]
Abstract
The success of multi-armed, peptide-based receptors in supramolecular chemistry traditionally is not only based on the sequence but equally on an appropriate positioning of various peptidic chains to create a multivalent array of binding elements. As a faster, more versatile and alternative access toward (pseudo)peptidic receptors, a new approach based on multiple Ugi four-component reactions (Ugi-4CR) is proposed as a means of simultaneously incorporating several binding and catalytic elements into organizing scaffolds. By employing α-amino acids either as the amino or acid components of the Ugi-4CRs, this multiple multicomponent process allows for the one-pot assembly of podands bearing chimeric peptide-peptoid chains as appended arms. Tripodal, bowl-shaped, and concave polyfunctional skeletons are employed as topologically varied platforms for positioning the multiple peptidic chains formed by Ugi-4CRs. In a similar approach, steroidal building blocks with several axially-oriented isocyano groups are synthesized and utilized to align the chimeric chains with conformational constrains, thus providing an alternative to the classical peptido-steroidal receptors. The branched and hybrid peptide-peptoid appendages allow new possibilities for both rational design and combinatorial production of synthetic receptors. The concept is also expandable to other multicomponent reactions.
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Affiliation(s)
- Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle/Saale, Germany
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28
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O'Connell KMG, Beckmann HSG, Laraia L, Horsley HT, Bender A, Venkitaraman AR, Spring DR. A two-directional strategy for the diversity-oriented synthesis of macrocyclic scaffolds. Org Biomol Chem 2013; 10:7545-51. [PMID: 22890306 DOI: 10.1039/c2ob26272j] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Macrocyclic compounds represent a structural class with exceptional potential for biological activity; however, they have historically been underrepresented in screening collections and synthetic libraries. In this article we report the development of a highly step-efficient strategy for the diversity-oriented synthesis of complex macrocyclic architectures, using a modular approach based on the two-directional synthesis of bifunctional linear precursors and their subsequent combination in a two-directional macrocyclisation process. In this proof of principle study, the synthesis of 14 such compounds was achieved. Cheminformatic analysis of the compounds produced suggests that they reside in biologically relevant regions of chemical space and the compounds were screened for activity against two cancer cell lines.
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Dasari B, Jogula S, Borhade R, Balasubramanian S, Chandrasekar G, Kitambi SS, Arya P. Macrocyclic Glycohybrid Toolbox Identifies Novel Antiangiogenesis Agents from Zebrafish Assay. Org Lett 2013; 15:432-5. [DOI: 10.1021/ol3032297] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Bhanudas Dasari
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Srinivas Jogula
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Ramdas Borhade
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Sridhar Balasubramanian
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Gayathri Chandrasekar
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Satish Srinivas Kitambi
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
| | - Prabhat Arya
- Dr. Reddy’s Institute of Life Sciences, University of Hyderabad Campus, Gachibowli, Hyderabad 500 046, India, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500 607, India, School of Life Sciences, Södertörns Högskola, Sweden, and Department of Biosciences and Medical Nutrition, Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden
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Niu TF, Sun M, Lv MF, Yi WB, Cai C. Synthesis of highly functionalized macrocycles by tandem multicomponent reactions and intramolecular Sonogashira cross-coupling. Org Biomol Chem 2013; 11:7232-8. [DOI: 10.1039/c3ob41367e] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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31
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Frost JR, Vitali F, Jacob NT, Brown MD, Fasan R. Macrocyclization of Organo-Peptide Hybrids through a Dual Bio-orthogonal Ligation: Insights from Structure-Reactivity Studies. Chembiochem 2012. [DOI: 10.1002/cbic.201200579] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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32
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van Berkel SS, Bögels BGM, Wijdeven MA, Westermann B, Rutjes FPJT. Recent Advances in Asymmetric Isocyanide-Based Multicomponent Reactions. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200030] [Citation(s) in RCA: 178] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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33
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34
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Wetzel S, Bon RS, Kumar K, Waldmann H. Biology-Oriented Synthesis. Angew Chem Int Ed Engl 2011; 50:10800-26. [DOI: 10.1002/anie.201007004] [Citation(s) in RCA: 396] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2010] [Indexed: 12/22/2022]
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35
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Liu W, Khedkar V, Baskar B, Schürmann M, Kumar K. Branching Cascades: A Concise Synthetic Strategy Targeting Diverse and Complex Molecular Frameworks. Angew Chem Int Ed Engl 2011; 50:6900-5. [DOI: 10.1002/anie.201102440] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2011] [Revised: 05/12/2011] [Indexed: 01/01/2023]
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36
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Liu W, Khedkar V, Baskar B, Schürmann M, Kumar K. Branching Cascades: A Concise Synthetic Strategy Targeting Diverse and Complex Molecular Frameworks. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201102440] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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37
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Madsen CM, Clausen MH. Biologically Active Macrocyclic Compounds – from Natural Products to Diversity‐Oriented Synthesis. European J Org Chem 2011. [DOI: 10.1002/ejoc.201001715] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Charlotte M. Madsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet Building 201, 2800 Kgs. Lyngby, Denmark, Fax: +45‐45933968
| | - Mads H. Clausen
- Department of Chemistry, Technical University of Denmark, Kemitorvet Building 201, 2800 Kgs. Lyngby, Denmark, Fax: +45‐45933968
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38
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Marsault E, Peterson ML. Macrocycles Are Great Cycles: Applications, Opportunities, and Challenges of Synthetic Macrocycles in Drug Discovery. J Med Chem 2011; 54:1961-2004. [DOI: 10.1021/jm1012374] [Citation(s) in RCA: 591] [Impact Index Per Article: 45.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Eric Marsault
- Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, Sherbrooke Québec, J1H5N4, Canada
| | - Mark L. Peterson
- Tranzyme Pharma Inc., 3001 12e Avenue Nord, Sherbrooke, Québec, J1H5N4, Canada
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Wessjohann LA, Ostrowski S, Bakulev V, Berseneva V, Bogdanov AV, Romanova IP, Mironov VF, Larionova OA, Shaikhutdinova GR, Sinyashin OG, Baibulatova NZ, Dokichev VA, Fedorova OV, Ovchinnikova IG, Rusinov GL, Titova JA, Nasonova A, Kim DJ, Kim KS, Jang YM, Kim SJ, Nasonova A, Kim DJ, Kim KS, Rakhimova EB, Minnebaev AB, Akhmetova VR, Qin C, Zhang R, Wang Q, Ren J, Tian L, Mironov MA, Demina TS, Tcoy AM, Akopova TA, Markvicheva EA, Chernyshenko AO, Zelenetski AN, Pandit SS. Multi-Component Reactions in Supramolecular Chemistry and Material Science. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2011. [DOI: 10.1007/978-1-4419-7270-5_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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40
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41
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Yoo B, Shin SBY, Huang ML, Kirshenbaum K. Peptoid macrocycles: making the rounds with peptidomimetic oligomers. Chemistry 2010; 16:5528-37. [PMID: 20414912 DOI: 10.1002/chem.200903549] [Citation(s) in RCA: 121] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Macrocyclic constraints are often employed to rigidify the conformation of flexible oligomeric systems. This approach has recently been used to organize the structure of peptoid oligomers, which are peptidomimetics composed of chemically diverse N-substituted glycine monomer units. In this review, we describe advances in the synthesis and characterization of cyclic peptoids. We evaluate how the installation of covalent constraints between the oligomer termini or side chains has been effective in defining peptoid conformations. We also discuss the potential applications for this promising family of macrocyclic peptidomimetics.
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Affiliation(s)
- Barney Yoo
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003-6688, USA
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Applications of synthetic carbohydrates to chemical biology. Curr Opin Chem Biol 2010; 14:404-11. [DOI: 10.1016/j.cbpa.2010.02.016] [Citation(s) in RCA: 128] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2009] [Revised: 02/01/2010] [Accepted: 02/18/2010] [Indexed: 11/19/2022]
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43
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Waldmann H, Eberhardt L, Wittstein K, Kumar K. Silver catalyzed cascade synthesis of alkaloid ring systems: concise total synthesis of fascaplysin, homofascaplysin C and analogues. Chem Commun (Camb) 2010; 46:4622-4. [PMID: 20386812 DOI: 10.1039/c001350a] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Herbert Waldmann
- Max Planck Institut für molekulare Physiologie, Otto-Hahn Strasse 11, 44227-Dortmund, Germany.
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Abstract
The four-component Hantzsch reaction provides access to pharmaceutically important dihydropyridines. To expand the utility of this method, we have developed a route under organocatalytic conditions with good yields and excellent ee's. Through catalyst screening, we found that a BINOL-phosphoric acid allowed enantioselective synthesis of six-membered heterocycles with a variety of substitution patterns.
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Affiliation(s)
- Christopher G. Evans
- University of Michigan, Department of Pathology and the Life Sciences Institute, 210 Washtenaw Ave., Ann Arbor, MI 48109
| | - Jason E. Gestwicki
- University of Michigan, Department of Pathology and the Life Sciences Institute, 210 Washtenaw Ave., Ann Arbor, MI 48109
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46
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Kumar K, Waldmann H. Synthesis of natural product inspired compound collections. Angew Chem Int Ed Engl 2009; 48:3224-42. [PMID: 19267376 DOI: 10.1002/anie.200803437] [Citation(s) in RCA: 240] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Natural products, their derivatives, and their analogues are among the most important sources for new drug candidates and tools for chemical biology and medicinal chemistry research. Therefore, there is a need for the development of efficient synthesis methods which give access to natural product derived and inspired compound collections. To meet this challenge, the requirements of multistep stereoselective syntheses, and the logic and methodology of natural product total synthesis need to be translated and adapted to the methods and formats for the synthesis of compound collections. Recent developments in the synthesis of natural product inspired compound collections having carbocyclic and heterocyclic scaffolds highlight the fact that this goal can be successfully attained. The progress made has paved the way for the integration of natural product inspired compound collections into medicinal chemistry and chemical biology research.
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Affiliation(s)
- Kamal Kumar
- Max Planck Institut für molekulare Physiologie, Otto-Hahn Strasse 11, 44227 Dortmund, Germany.
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47
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Kumar K, Waldmann H. Die Synthese von naturstoffinspirierten Verbindungsbibliotheken. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200803437] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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48
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Rivera DG, Wessjohann LA. Architectural Chemistry: Synthesis of Topologically Diverse Macromulticycles by Sequential Multiple Multicomponent Macrocyclizations. J Am Chem Soc 2009; 131:3721-32. [DOI: 10.1021/ja809005k] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel G. Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany, and Center for Natural Products Study, Faculty of Chemistry, University of Havana, 10400 Havana, Cuba
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany, and Center for Natural Products Study, Faculty of Chemistry, University of Havana, 10400 Havana, Cuba
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Krasavin M, Shkavrov S, Parchinsky V, Bukhryakov K. Imidazo[1,2-a]quinoxalines Accessed via Two Sequential Isocyanide-Based Multicomponent Reactions. J Org Chem 2009; 74:2627-9. [DOI: 10.1021/jo900050k] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mikhail Krasavin
- Chemical Diversity Research Institute, 2a Rabochaya Street, Khimki, Moscow Region, 141400, Russia
| | - Sergey Shkavrov
- Chemical Diversity Research Institute, 2a Rabochaya Street, Khimki, Moscow Region, 141400, Russia
| | - Vladislav Parchinsky
- Chemical Diversity Research Institute, 2a Rabochaya Street, Khimki, Moscow Region, 141400, Russia
| | - Konstantin Bukhryakov
- Chemical Diversity Research Institute, 2a Rabochaya Street, Khimki, Moscow Region, 141400, Russia
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50
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Wessjohann LA, Rivera DG, Vercillo OE. Multiple Multicomponent Macrocyclizations (MiBs): A Strategic Development Toward Macrocycle Diversity. Chem Rev 2009; 109:796-814. [DOI: 10.1021/cr8003407] [Citation(s) in RCA: 260] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
| | - Otilie E. Vercillo
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle/Saale, Germany
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