1
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Patyk-Kaźmierczak E, Izquierdo-Ruiz F, Lobato A, Kaźmierczak M, Moszczyńska I, Olejniczak A, Recio JM. The curious case of proton migration under pressure in the malonic acid and 4,4'-bipyridine cocrystal. IUCRJ 2024; 11:168-181. [PMID: 38275161 PMCID: PMC10916288 DOI: 10.1107/s2052252524000344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 01/09/2024] [Indexed: 01/27/2024]
Abstract
In the search for new active pharmaceutical ingredients, the precise control of the chemistry of cocrystals becomes essential. One crucial step within this chemistry is proton migration between cocrystal coformers to form a salt, usually anticipated by the empirical ΔpKa rule. Due to the effective role it plays in modifying intermolecular distances and interactions, pressure adds a new dimension to the ΔpKa rule. Still, this variable has been scarcely applied to induce proton-transfer reactions within these systems. In our study, high-pressure X-ray diffraction and Raman spectroscopy experiments, supported by DFT calculations, reveal modifications to the protonation states of the 4,4'-bipyridine (BIPY) and malonic acid (MA) cocrystal (BIPYMA) that allow the conversion of the cocrystal phase into ionic salt polymorphs. On compression, neutral BIPYMA and monoprotonated (BIPYH+MA-) species coexist up to 3.1 GPa, where a phase transition to a structure of P21/c symmetry occurs, induced by a double proton-transfer reaction forming BIPYH22+MA2-. The low-pressure C2/c phase is recovered at 2.4 GPa on decompression, leading to a 0.7 GPa hysteresis pressure range. This is one of a few studies on proton transfer in multicomponent crystals that shows how susceptible the interconversion between differently charged species is to even slight pressure changes, and how the proton transfer can be a triggering factor leading to changes in the crystal symmetry. These new data, coupled with information from previous reports on proton-transfer reactions between coformers, extend the applicability of the ΔpKa rule incorporating the pressure required to induce salt formation.
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Affiliation(s)
- Ewa Patyk-Kaźmierczak
- Facuty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Fernando Izquierdo-Ruiz
- MALTA-Consolider Team and Departamento de Química Física, University Complutense of Madrid, Avda. de Séneca, 2 Ciudad Universitaria, Madrid 28040, Spain
| | - Alvaro Lobato
- MALTA-Consolider Team and Departamento de Química Física, University Complutense of Madrid, Avda. de Séneca, 2 Ciudad Universitaria, Madrid 28040, Spain
| | - Michał Kaźmierczak
- Facuty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Ida Moszczyńska
- Facuty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Anna Olejniczak
- Facuty of Chemistry, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - J. Manuel Recio
- MALTA-Consolider Team and Departamento de Química Física y Analítica, University of Oviedo, Julián Clavería n° 8, Oviedo 33006, Spain
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2
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Rufino FM, Vasconcelos DLM, Freire PTC, Oliveira RC, Remédios CMR, da Silva JH, Alabarse FG, Lima JA. In situ Raman spectroscopy and synchrotron X-ray diffraction studies on maleic acid under high pressure conditions. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 303:123264. [PMID: 37611523 DOI: 10.1016/j.saa.2023.123264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 08/08/2023] [Accepted: 08/14/2023] [Indexed: 08/25/2023]
Abstract
Maleic acid was studied by Raman spectroscopy and powder synchrotron X-ray diffraction (XRD) under high pressure conditions by using a diamond anvil cell. The Raman spectroscopy measurements were performed from ambient pressure up to 9.2 GPa in the 100-3200 cm-1 spectral range. While the XRD measurements were performed up to 10.1 GPa. Here we present the pressure-dependence behavior from both the Raman modes and cell parameters. Maleic acid lattice parameters decrease anisotropically as a function of pressure and a reduction of 27% in the volume of the unit cell was observed. Modifications in the material's compressibility were observed at around 2 and 6 GPa.
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Affiliation(s)
- F M Rufino
- Departamento de Física, Universidade Federal do Ceará, C. P. 6030, CEP 60455-900 Fortaleza, CE, Brazil
| | - D L M Vasconcelos
- Faculdade de Educação Ciências e Letras do Sertão Central, Universidade Estadual do Ceará, CEP 63.902-098 Quixadá, CE, Brazil
| | - P T C Freire
- Departamento de Física, Universidade Federal do Ceará, C. P. 6030, CEP 60455-900 Fortaleza, CE, Brazil
| | - R C Oliveira
- Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, CEP 66075-110 - Belém-PA, Brazil
| | - C M R Remédios
- Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, CEP 66075-110 - Belém-PA, Brazil
| | - J H da Silva
- Universidade Federal do Cariri, CEP 63000-000 Juazeiro do Norte, CE, Brazil
| | - F G Alabarse
- Elettra Sincrotrone Trieste, S.S. 14 km 163.5, Area Science Park, 34149 Basovizza, Trieste, Italy
| | - J A Lima
- Departamento de Física, Universidade Federal do Ceará, C. P. 6030, CEP 60455-900 Fortaleza, CE, Brazil.
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3
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Novelli G, Kamenev KV, Maynard-Casely HE, Parsons S, McIntyre GJ. Use of a miniature diamond-anvil cell in a joint X-ray and neutron high-pressure study on copper sulfate pentahydrate. IUCRJ 2022; 9:73-85. [PMID: 35059212 PMCID: PMC8733890 DOI: 10.1107/s2052252521010708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 10/15/2021] [Indexed: 06/14/2023]
Abstract
Single-crystal X-ray and neutron diffraction data are usually collected using separate samples. This is a disadvantage when the sample is studied at high pressure because it is very difficult to achieve exactly the same pressure in two separate experiments, especially if the neutron data are collected using Laue methods where precise absolute values of the unit-cell dimensions cannot be measured to check how close the pressures are. In this study, diffraction data have been collected under the same conditions on the same sample of copper(II) sulfate pentahydrate, using a conventional laboratory diffractometer and source for the X-ray measurements and the Koala single-crystal Laue diffractometer at the ANSTO facility for the neutron measurements. The sample, of dimensions 0.40 × 0.22 × 0.20 mm3 and held at a pressure of 0.71 GPa, was contained in a miniature Merrill-Bassett diamond-anvil cell. The highly penetrating diffracted neutron beams passing through the metal body of the miniature cell as well as through the diamonds yielded data suitable for structure refinement, and compensated for the low completeness of the X-ray measurements, which was only 24% on account of the triclinic symmetry of the sample and the shading of reciprocal space by the cell. The two data-sets were combined in a single 'XN' structure refinement in which all atoms, including H atoms, were refined with anisotropic displacement parameters. The precision of the structural parameters was improved by a factor of up to 50% in the XN refinement compared with refinements using the X-ray or neutron data separately.
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Affiliation(s)
- Giulia Novelli
- EaStCHEM School of Chemistry and Centre for Science at Extreme Conditions, University of Edinburgh, King’s Buildings, West Mains Road, Edinburgh EH9 3FJ, United Kingdom
| | - Konstantin V. Kamenev
- School of Engineering and Centre for Science at Extreme Conditions, University of Edinburgh, Erskine Williamson Building, King’s Buildings, Edinburgh EH9 3FD, United Kingdom
| | - Helen E. Maynard-Casely
- Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Lucas Heights NSW 2234, Australia
| | - Simon Parsons
- EaStCHEM School of Chemistry and Centre for Science at Extreme Conditions, University of Edinburgh, King’s Buildings, West Mains Road, Edinburgh EH9 3FJ, United Kingdom
| | - Garry J. McIntyre
- Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation, New Illawarra Road, Lucas Heights NSW 2234, Australia
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4
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Katrusiak A. Lab in a DAC - high-pressure crystal chemistry in a diamond-anvil cell. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2019; 75:918-926. [PMID: 32830671 DOI: 10.1107/s2052520619013246] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 09/26/2019] [Indexed: 06/11/2023]
Abstract
The diamond-anvil cell (DAC) was invented 60 years ago, ushering in a new era for material sciences, extending research into the dimension of pressure. Most structural determinations and chemical research have been conducted at ambient pressure, i.e. the atmospheric pressure on Earth. However, modern experimental techniques are capable of generating pressure and temperature higher than those at the centre of Earth. Such extreme conditions can be used for obtaining unprecedented chemical compounds, but, most importantly, all fundamental phenomena can be viewed and understood from a broader perspective. This knowledge, in turn, is necessary for designing new generations of materials and applications, for example in the pharmaceutical industry or for obtaining super-hard materials. The high-pressure chambers in the DAC are already used for a considerable variety of experiments, such as chemical reactions, crystallizations, measurements of electric, dielectric and magnetic properties, transformations of biological materials as well as experiments on living tissue. Undoubtedly, more applications involving elevated pressure will follow. High-pressure methods become increasingly attractive, because they can reduce the sample volume and compress the intermolecular contacts to values unattainable by other methods, many times stronger than at low temperature. The compressed materials reveal new information about intermolecular interactions and new phases of single- and multi-component compounds can be obtained. At the same time, high-pressure techniques, and particularly those of X-ray diffraction using the DAC, have been considerably improved and many innovative developments implemented. Increasingly more equipment of in-house laboratories, as well as the instrumentation of beamlines at synchrotrons and thermal neutron sources are dedicated to high-pressure research.
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Affiliation(s)
- Andrzej Katrusiak
- Faculty of Chemistry, Adam Mickiewicz University, ul. Uniwersytetu Poznańskiego 8, Poznań, 61-614, Poland
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5
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Giordano N, Afanasjevs S, Beavers CM, Hobday CL, Kamenev KV, O'Bannon EF, Ruiz-Fuertes J, Teat SJ, Valiente R, Parsons S. The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile. Molecules 2019; 24:molecules24102018. [PMID: 31137795 PMCID: PMC6572472 DOI: 10.3390/molecules24102018] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Revised: 05/20/2019] [Accepted: 05/22/2019] [Indexed: 11/16/2022] Open
Abstract
The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5.0 GPa, the b axis compressing by 3.3%, and the a and c axes by 12.3 and 10.9 %. Since the chains are exactly aligned with the crystallographic b axis these data characterise the compressibility of the I···N interaction relative to the inter-chain interactions, and indicate that the halogen bond is the most robust intermolecular interaction in the structure, shortening from 3.168(4) at ambient pressure to 2.840(1) Å at 5.0 GPa. The π∙∙∙π contacts are most sensitive to pressure, and in one case the perpendicular stacking distance shortens from 3.6420(8) to 3.139(4) Å. Packing energy calculations (PIXEL) indicate that the π∙∙∙π interactions have been distorted into a destabilising region of their potentials at 5.0 GPa. The structure undergoes a transition to a triclinic ( P 1 ¯ ) phase at 5.5 GPa. Over the course of the transition, the initially colourless and transparent crystal darkens on account of formation of microscopic cracks. The resistance drops by 10% and the optical transmittance drops by almost two orders of magnitude. The I···N bond increases in length to 2.928(10) Å and become less linear [<C-I∙∙∙N = 166.2(5)°]; the energy stabilises by 2.5 kJ mol-1 and the mixed C-I/I..N stretching frequency observed by Raman spectroscopy increases from 249 to 252 cm-1. The driving force of the transition is shown to be relief of strain built-up in the π∙∙∙π interactions rather than minimisation of the molar volume. The triclinic phase persists up to 8.1 GPa.
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Affiliation(s)
- Nico Giordano
- Centre for Science at Extreme Conditions and EaStCHEM School of Chemistry, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh, Scotland EH9 3FD, UK.
- Advanced Light Source, 1 Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Sergejs Afanasjevs
- Centre for Science at Extreme Conditions and School of Engineering, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh, Scotland EH9 3FD, UK.
| | - Christine M Beavers
- Advanced Light Source, 1 Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
- Department of Earth & Planetary Sciences, University of California, Santa Cruz, 1156 High Street Santa Cruz, CA 95064, USA.
- Present address: Diamond Light Source, STFC Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Harwell Oxford, Didcot OX11 0QX, UK.
| | - Claire L Hobday
- Centre for Science at Extreme Conditions and EaStCHEM School of Chemistry, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh, Scotland EH9 3FD, UK.
| | - Konstantin V Kamenev
- Centre for Science at Extreme Conditions and School of Engineering, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh, Scotland EH9 3FD, UK.
| | - Earl F O'Bannon
- Advanced Light Source, 1 Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
- Department of Earth & Planetary Sciences, University of California, Santa Cruz, 1156 High Street Santa Cruz, CA 95064, USA.
- Present address: Physical and Life Sciences, Physics Division, Lawrence Livermore National Laboratory, Livermore, CA 94551, USA.
| | - Javier Ruiz-Fuertes
- Dpto. DCITIMAC, Facultad de Ciencias, Universidad de Cantabria, 39005 Santander, Spain.
| | - Simon J Teat
- Advanced Light Source, 1 Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Rafael Valiente
- Dpto. Física Aplicada, Facultad de Ciencias, Universidad de Cantabria-IDIVAL, 39005 Santander, Spain.
| | - Simon Parsons
- Centre for Science at Extreme Conditions and EaStCHEM School of Chemistry, The University of Edinburgh, King's Buildings, West Mains Road, Edinburgh, Scotland EH9 3FD, UK.
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6
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Colmenero F. Mechanical properties of anhydrous oxalic acid and oxalic acid dihydrate. Phys Chem Chem Phys 2019; 21:2673-2690. [DOI: 10.1039/c8cp07188h] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The mechanical properties of oxalic acid dihydrate and anhydrous oxalic acid (α and β polymorphic forms) were obtained by using rigorous theoretical solid-state methods based on density functional theory using plane waves and pseudopotentials.
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Affiliation(s)
- Francisco Colmenero
- Instituto de Estructura de la Materia – Consejo Superior de Investigaciones Científicas (IEM-CSIC)
- 123 – 28006 Madrid
- Spain
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7
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Bajaj N, Bhatt H, Murli C, Vishwakarma SR, Chitra R, Ravindran TR, Deo MN. Perceptible isotopic effect in 3D-framework of α-glycine at low temperatures. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 204:495-507. [PMID: 29975911 DOI: 10.1016/j.saa.2018.06.087] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 06/22/2018] [Accepted: 06/23/2018] [Indexed: 06/08/2023]
Abstract
Glycine, the most fundamental amino acid, albeit studied for many decades, has kept researchers captivated with interesting structural variations relevant to important biological, astrophysical and technological applications. We report here a noticeable effect of deuteration on the three dimensional hydrogen bonding network of α-glycine using low temperature infrared absorption studies in a wide spectral range, corroborated with Raman scattering studies. These systematic studies in the range 300-4.2 K have demonstrated a relatively compact assembly of glycine molecules in the three dimensional bilayered structure of hydrogenated glycine (gly-h) at low temperatures. This is inferred from a remarkable temperature effect in the weak intra-bilayer hydrogen bond ~ along the b-axis, which strengthens upon cooling. A pronounced increase in the intensity of NH3 torsional and NH stretching modes has been observed. This is accompanied with a large rate of stiffening and softening respectively of these modes upon cooling and a change in slope across 210 K and 80 K. In contrast, the D---O hydrogen bond lengths in fully deuterated isotope (gly-d), as estimated using empirical correlation, show that the weak intra-bilayer hydrogen bond is not strengthened upon cooling down to 180 K, whereas the stronger intra-layer hydrogen bonds in the ac-plane become further strong. The ND3 torsional vibrations show no temperature effect. This implies a relatively stable two dimensional layered structure formed by strongly hydrogen bonded glycine sheets in the ac-plane. Below 180 K, similar qualitative trends have been obtained for the hydrogen bond lengths in the two isotopes. In addition, temperature induced variation of the characteristic "indicator" band of zwitterionic gly-h and gly-d has also been reported.
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Affiliation(s)
- Naini Bajaj
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India; Homi Bhabha National Institute, Bhabha Atomic Research Centre, Mumbai, India
| | - Himal Bhatt
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India.
| | - Chitra Murli
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India; Homi Bhabha National Institute, Bhabha Atomic Research Centre, Mumbai, India
| | - S R Vishwakarma
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India
| | - R Chitra
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai, India
| | - T R Ravindran
- Materials Science Group, Indira Gandhi Centre for Atomic Research, Kalpakkam, India
| | - M N Deo
- High Pressure & Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, India; Homi Bhabha National Institute, Bhabha Atomic Research Centre, Mumbai, India.
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8
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Marshall WG, Jones RH, Knight KS, Clews J, Darton RJ, Miller W, Coles SJ, Pitak MB. Structural organization in the trimethylamine iodine monochloride complex. CrystEngComm 2017. [DOI: 10.1039/c7ce00869d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combination of a strong N⋯I–Cl halogen bond and a weak C–H⋯Cl hydrogen bond lead to the formation of dimeric species in the solid.
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Affiliation(s)
| | - Richard H. Jones
- Birchall Centre for Inorganic Materials
- School of Chemical and Physical Sciences
- Keele University
- Keele
- ST5 5BG UK
| | - Kevin S. Knight
- ISIS Facility
- STFC Rutherford Appleton Lab
- Harwell Oxford
- Oxon
- UK
| | - John Clews
- Birchall Centre for Inorganic Materials
- School of Chemical and Physical Sciences
- Keele University
- Keele
- ST5 5BG UK
| | - Richard J. Darton
- Birchall Centre for Inorganic Materials
- School of Chemical and Physical Sciences
- Keele University
- Keele
- ST5 5BG UK
| | - William Miller
- Birchall Centre for Inorganic Materials
- School of Chemical and Physical Sciences
- Keele University
- Keele
- ST5 5BG UK
| | - Simon J. Coles
- UK National Crystallography Service, Chemistry
- Faculty of Natural and Environmental Sciences
- University of Southampton
- Southampton SO17 1BJ
- UK
| | - Mateusz B. Pitak
- UK National Crystallography Service, Chemistry
- Faculty of Natural and Environmental Sciences
- University of Southampton
- Southampton SO17 1BJ
- UK
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9
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Bhatt H, Mishra AK, Murli C, Verma AK, Garg N, Deo MN, Sharma SM. Proton transfer aiding phase transitions in oxalic acid dihydrate under pressure. Phys Chem Chem Phys 2016; 18:8065-74. [PMID: 26924455 DOI: 10.1039/c5cp07442h] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxalic acid dihydrate, an important molecular solid in crystal chemistry, ecology and physiology, has been studied for nearly 100 years now. The most debated issues regarding its proton dynamics have arisen due to an unusually short hydrogen bond between the acid and water molecules. Using combined in situ spectroscopic studies and first-principles simulations at high pressures, we show that the structural modification associated with this hydrogen bond is much more significant than ever assumed. Initially, under pressure, proton migration takes place along this strong hydrogen bond at a very low pressure of 2 GPa. This results in the protonation of water with systematic formation of dianionic oxalate and hydronium ion motifs, thus reversing the hydrogen bond hierarchy in the high pressure phase II. The resulting hydrogen bond between a hydronium ion and a carboxylic group shows remarkable strengthening under pressure, even in the pure ionic phase III. The loss of cooperativity of hydrogen bonds leads to another phase transition at ∼ 9 GPa through reorientation of other hydrogen bonds. The high pressure phase IV is stabilized by a strong hydrogen bond between the dominant CO2 and H2O groups of oxalate and hydronium ions, respectively. These findings suggest that oxalate systems may provide useful insights into proton transfer reactions and assembly of simple molecules under extreme conditions.
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Affiliation(s)
- Himal Bhatt
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - A K Mishra
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Chitra Murli
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Ashok K Verma
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Nandini Garg
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - M N Deo
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
| | - Surinder M Sharma
- High Pressure and Synchrotron Radiation Physics Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
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10
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Mohaček-Grošev V, Grdadolnik J, Hadži D. Evidence of Polaron Excitations in Low Temperature Raman Spectra of Oxalic Acid Dihydrate. J Phys Chem A 2016; 120:2789-96. [PMID: 27093217 DOI: 10.1021/acs.jpca.5b12577] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Low temperature Raman spectra of oxalic acid dihydrate (8-300 K) for both the polycrystalline and single crystal phase show strong variation with temperature in the interval from 1200 to 2000 cm(-1). Previous low temperature diffraction studies all confirmed the stability of the crystal P21/n phase with no indications of any phase transition, reporting the existence of a strong hydrogen bond between the oxalic acid and a water molecule. A new group of Raman bands in the 1200-1300 cm(-1) interval below 90 K is observed, caused by possible loss of the center of inversion. This in turn could originate either due to disorder in hydroxyl proton positions or due to proton transfer from carboxylic group to water molecule. The hypothesis of proton transfer is further supported by the emergence of new bands centered at 1600 and 1813 cm(-1), which can be explained with vibrations of H3O(+) ions. The broad band at 1600 cm(-1) looses intensity, while the band at 1813 cm(-1) gains intensity on cooling. The agreement between quantum calculations of vibrational spectra and experimentally observed Raman bands of hydronium ions in oxalic acid sesquihydrate crystal corroborates this hypothesis.
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Affiliation(s)
- Vlasta Mohaček-Grošev
- Center of Excellence for Advanced Materials and Sensing Devices, Ruđer Bošković Institute , Bijenička c. 54, 10002 Zagreb, Croatia
| | - Jože Grdadolnik
- National Institute of Chemistry , Hajdrihova 19, 1000 Ljubljana, Slovenia
| | - Dušan Hadži
- National Institute of Chemistry , Hajdrihova 19, 1000 Ljubljana, Slovenia
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11
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Bhatt H, Murli C, Mishra AK, Verma AK, Garg N, Deo MN, Chitra R, Sharma SM. Hydrogen Bond Symmetrization in Glycinium Oxalate under Pressure. J Phys Chem B 2016; 120:851-9. [DOI: 10.1021/acs.jpcb.5b11507] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Himal Bhatt
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - Chitra Murli
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - A. K. Mishra
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - Ashok K. Verma
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - Nandini Garg
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - M. N. Deo
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - R. Chitra
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
| | - Surinder M. Sharma
- High Pressure and Synchrotron Radiation Physics Division, ‡Solid State Physics
Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
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12
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Losev EA, Zakharov BA, Boldyreva EV. Polymorphic transformations in glycine co-crystals at low temperature and high pressure: two new examples as a follow-up to a glycine–glutaric acid study. CrystEngComm 2016. [DOI: 10.1039/c6ce00561f] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Stare J, Hadži D. Cooperativity Assisted Shortening of Hydrogen Bonds in Crystalline Oxalic Acid Dihydrate: DFT and NBO Model Studies. J Chem Theory Comput 2014; 10:1817-23. [DOI: 10.1021/ct500167n] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Jernej Stare
- National
Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia
| | - Dušan Hadži
- National
Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia
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Zakharov BA, Losev EA, Boldyreva EV. Polymorphism of “glycine–glutaric acid” co-crystals: the same phase at low temperatures and high pressures. CrystEngComm 2013. [DOI: 10.1039/c3ce27013k] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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15
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Abstract
This chapter comments on the motivations and the methods of crystallographic studies at low temperature. Cry-crystallography is a brunch of Crystallography, a science that is too often confused with a technique. On the other hand, the scientific background to study crystal phases at low temperature is here provided, together with a survey of many possible techniques that provide complementary or supplementary information. Several applications are discussed, in particular in relation with highly accurate studies like electron density determination or phase transition mechanisms.
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Affiliation(s)
- Piero Macchi
- Department of Chemistry and Biochemistry, University of Bern, Freistrasse 3, CH-3012, Bern, Switzerland.
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16
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Brittain HG. Polymorphism and Solvatomorphism 2010. J Pharm Sci 2012; 101:464-84. [DOI: 10.1002/jps.22788] [Citation(s) in RCA: 103] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Revised: 09/18/2011] [Accepted: 09/22/2011] [Indexed: 01/06/2023]
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17
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Okoth MO, Vrcelj RM, Sheen DB, Sherwood JN. Hydration studies of a simple molecular solid. CrystEngComm 2012. [DOI: 10.1039/c2ce06301h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Bekö SL, Schmidt MU, Bond AD. An experimental screen for quinoline/fumaric acid salts and co-crystals. CrystEngComm 2012. [DOI: 10.1039/c2ce06439a] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Tumanov IA, Achkasov AF, Boldyreva EV, Boldyrev VV. Following the products of mechanochemical synthesis step by step. CrystEngComm 2011. [DOI: 10.1039/c0ce00869a] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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