1
|
Schwob L, Dörner S, Atak K, Schubert K, Timm M, Bülow C, Zamudio-Bayer V, von Issendorff B, Lau JT, Techert S, Bari S. Site-Selective Dissociation upon Sulfur L-Edge X-ray Absorption in a Gas-Phase Protonated Peptide. J Phys Chem Lett 2020; 11:1215-1221. [PMID: 31978303 DOI: 10.1021/acs.jpclett.0c00041] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Site-selective dissociation induced by core photoexcitation of biomolecules is of key importance for the understanding of radiation damage processes and dynamics and for its promising use as "chemical scissors" in various applications. However, identifying products of site-selective dissociation in large molecules is challenging at the carbon, nitrogen, and oxygen edges because of the high recurrence of these atoms and related chemical groups. In this paper, we present the observation of site-selective dissociation at the sulfur L-edge in the gas-phase peptide methionine enkephalin, which contains only a single sulfur atom. Near-edge X-ray absorption mass spectrometry has revealed that the resonant S 2p → σ*C-S excitation of the sulfur contained in the methionine side chain leads to site-selective dissociation, which is not the case after core ionization above the sulfur L-edge. The prospects of such results for the study of charge dynamics in biomolecular systems are discussed.
Collapse
Affiliation(s)
- Lucas Schwob
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
| | - Simon Dörner
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
| | - Kaan Atak
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
| | - Kaja Schubert
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
| | - Martin Timm
- Abteilung für Hochempfindliche Röntgenspektroskopie , Helmholtz Zentrum Berlin für Materialien und Energie , Albert-Einstein-Strasse 15 , 12489 Berlin , Germany
| | - Christine Bülow
- Abteilung für Hochempfindliche Röntgenspektroskopie , Helmholtz Zentrum Berlin für Materialien und Energie , Albert-Einstein-Strasse 15 , 12489 Berlin , Germany
| | - Vicente Zamudio-Bayer
- Abteilung für Hochempfindliche Röntgenspektroskopie , Helmholtz Zentrum Berlin für Materialien und Energie , Albert-Einstein-Strasse 15 , 12489 Berlin , Germany
| | - Bernd von Issendorff
- Physikalisches Institut , Universität Freiburg , Hermann-Herder-Straße 3 , 79104 Freiburg , Germany
| | - J Tobias Lau
- Abteilung für Hochempfindliche Röntgenspektroskopie , Helmholtz Zentrum Berlin für Materialien und Energie , Albert-Einstein-Strasse 15 , 12489 Berlin , Germany
- Physikalisches Institut , Universität Freiburg , Hermann-Herder-Straße 3 , 79104 Freiburg , Germany
| | - Simone Techert
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
- Institute of X-ray Physics , University of Göttingen , Friedrich-Hund-Platz 1 , 37077 Göttingen , Germany
| | - Sadia Bari
- Deutsches Elektronen-Synchrotron DESY , Notkestrasse 85 , 22607 Hamburg , Germany
| |
Collapse
|
2
|
Schwob L, Lalande M, Egorov D, Rangama J, Hoekstra R, Vizcaino V, Schlathölter T, Poully JC. Radical-driven processes within a peptidic sequence of type I collagen upon single-photon ionisation in the gas phase. Phys Chem Chem Phys 2017; 19:22895-22904. [DOI: 10.1039/c7cp03376a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Radical creation after single-photon ionisation of collagen peptides induces the loss of molecules from amino-acid residue side-chains.
Collapse
Affiliation(s)
- Lucas Schwob
- CIMAP
- UMP 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - Mathieu Lalande
- CIMAP
- UMP 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - Dmitrii Egorov
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| | - Jimmy Rangama
- CIMAP
- UMP 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - Ronnie Hoekstra
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| | - Violaine Vizcaino
- CIMAP
- UMP 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - Thomas Schlathölter
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| | | |
Collapse
|
3
|
Egorov D, Hoekstra R, Schlathölter T. A comparative VUV absorption mass-spectroscopy study on protonated peptides of different size. Phys Chem Chem Phys 2017; 19:20608-20618. [DOI: 10.1039/c7cp03203j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The response of gas-phase peptides upon vacuum ultraviolet absorption depends strongly on the peptide size.
Collapse
Affiliation(s)
- D. Egorov
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| | - R. Hoekstra
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| | - T. Schlathölter
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- The Netherlands
| |
Collapse
|
4
|
Schlathölter T, Reitsma G, Egorov D, Gonzalez-Magaña O, Bari S, Boschman L, Bodewits E, Schnorr K, Schmid G, Schröter CD, Moshammer R, Hoekstra R. Multiple Ionization of Free Ubiquitin Molecular Ions in Extreme Ultraviolet Free-Electron Laser Pulses. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Thomas Schlathölter
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Geert Reitsma
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
- Max-Born-Institute; Max Born Strasse 2A 12489 Berlin Germany
| | - Dmitrii Egorov
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Olmo Gonzalez-Magaña
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Sadia Bari
- European XFEL GmbH; Holzkoppel 4 22869 Schenefeld Germany
- DESY; Notkestraße 85 22607 Hamburg Germany
| | - Leon Boschman
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
- Kapteyn Institute; Landleven 12 9747 AD Groningen The Netherlands
| | - Erwin Bodewits
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Kirsten Schnorr
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | - Georg Schmid
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | | | - Robert Moshammer
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | - Ronnie Hoekstra
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| |
Collapse
|
5
|
Schlathölter T, Reitsma G, Egorov D, Gonzalez-Magaña O, Bari S, Boschman L, Bodewits E, Schnorr K, Schmid G, Schröter CD, Moshammer R, Hoekstra R. Multiple Ionization of Free Ubiquitin Molecular Ions in Extreme Ultraviolet Free-Electron Laser Pulses. Angew Chem Int Ed Engl 2016; 55:10741-5. [DOI: 10.1002/anie.201605335] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Indexed: 11/09/2022]
Affiliation(s)
- Thomas Schlathölter
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Geert Reitsma
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
- Max-Born-Institute; Max Born Strasse 2A 12489 Berlin Germany
| | - Dmitrii Egorov
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Olmo Gonzalez-Magaña
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Sadia Bari
- European XFEL GmbH; Holzkoppel 4 22869 Schenefeld Germany
- DESY; Notkestraße 85 22607 Hamburg Germany
| | - Leon Boschman
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
- Kapteyn Institute; Landleven 12 9747 AD Groningen The Netherlands
| | - Erwin Bodewits
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Kirsten Schnorr
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | - Georg Schmid
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | | | - Robert Moshammer
- Max-Planck-Institut für Kernphysik; Saupfercheckweg 1 69117 Heidelberg Germany
| | - Ronnie Hoekstra
- Zernike Institute for Advanced Materials; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| |
Collapse
|
6
|
Egorov D, Schwob L, Lalande M, Hoekstra R, Schlathölter T. Near edge X-ray absorption mass spectrometry of gas phase proteins: the influence of protein size. Phys Chem Chem Phys 2016; 18:26213-26223. [DOI: 10.1039/c6cp05254a] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The response of gas-phase proteins upon soft X-ray absorption depends strongly on the proteins size.
Collapse
Affiliation(s)
- D. Egorov
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- Netherlands
| | - L. Schwob
- CIMAP
- UMR 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - M. Lalande
- CIMAP
- UMR 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie)
- Caen
- France
| | - R. Hoekstra
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- Netherlands
| | - T. Schlathölter
- Zernike Institute for Advanced Materials
- University of Groningen
- 9747AG Groningen
- Netherlands
| |
Collapse
|
7
|
Ranković ML, Canon F, Nahon L, Giuliani A, Milosavljević AR. VUV action spectroscopy of protonated leucine-enkephalin peptide in the 6-14 eV range. J Chem Phys 2015; 143:244311. [DOI: 10.1063/1.4939080] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- M. Lj. Ranković
- Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia
| | - F. Canon
- INRA, UMR1324 Centre des Sciences du Goût et de l’Alimentation, F-21000 Dijon, France
| | - L. Nahon
- SOLEIL, l’Orme des Merisiers, St Aubin, BP48, 91192 Gif sur Yvette Cedex, France
| | - A. Giuliani
- SOLEIL, l’Orme des Merisiers, St Aubin, BP48, 91192 Gif sur Yvette Cedex, France
- INRA, UAR1008, CEPIA, Rue de la Géraudière, BP 71627, 44316 Nantes, France
| | - A. R. Milosavljević
- Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia
- Radiation Laboratory, University of Notre Dame, Notre Dame, Indiana 46556, USA
| |
Collapse
|
8
|
Canon F, Milosavljević AR, Nahon L, Giuliani A. Action spectroscopy of a protonated peptide in the ultraviolet range. Phys Chem Chem Phys 2015; 17:25725-33. [DOI: 10.1039/c4cp04762a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Action spectroscopy of substance P, a model undecapeptide, has been probed from 5.2 eV to 20 eV.
Collapse
Affiliation(s)
- Francis Canon
- Synchrotron Soleil
- l'Orme des Merisiers
- 91192 Gif sur Yvette Cedex
- France
- UMR1324 Centre des Sciences du Goût et de l'Alimentation
| | | | - Laurent Nahon
- Synchrotron Soleil
- l'Orme des Merisiers
- 91192 Gif sur Yvette Cedex
- France
| | - Alexandre Giuliani
- Synchrotron Soleil
- l'Orme des Merisiers
- 91192 Gif sur Yvette Cedex
- France
- Uar1008
| |
Collapse
|
9
|
Giuliani A, Milosavljević AR, Canon F, Nahon L. Contribution of synchrotron radiation to photoactivation studies of biomolecular ions in the gas phase. MASS SPECTROMETRY REVIEWS 2014; 33:424-441. [PMID: 24375654 DOI: 10.1002/mas.21398] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Photon activation of ions in the visible and ultraviolet range attracts a growing interest, partly for its promising applications in tandem mass spectrometry. However, this task is not trivial, as it requires notably high brilliance photon sources. Hence, most of the work in that field has been performed using lasers. Synchrotron radiation is a source continuously tunable over a wide photon energy range and which possesses the necessary characteristics for ion activation. This review focuses on the array of applications of synchrotron radiation in photon activation of ions ranging from near UV to soft X-rays.
Collapse
Affiliation(s)
- Alexandre Giuliani
- Synchrotron SOLEIL, L'Orme des Merisiers, Saint Aubin, 91192, Gif-sur-Yvette, France; UAR1008 CEPIA, INRA, 44316, Nantes, France
| | | | | | | |
Collapse
|
10
|
Duffy MJ, Kelly O, Calvert CR, King RB, Belshaw L, Kelly TJ, Costello JT, Timson DJ, Bryan WA, Kierspel T, Turcu ICE, Cacho CM, Springate E, Williams ID, Greenwood JB. Fragmentation of neutral amino acids and small peptides by intense, femtosecond laser pulses. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2013; 24:1366-1375. [PMID: 23817831 DOI: 10.1007/s13361-013-0653-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2013] [Revised: 04/15/2013] [Accepted: 04/16/2013] [Indexed: 06/02/2023]
Abstract
High power femtosecond laser pulses have unique properties that could lead to their application as ionization or activation sources in mass spectrometry. By concentrating many photons into pulse lengths approaching the timescales associated with atomic motion, very strong electric field strengths are generated, which can efficiently ionize and fragment molecules without the need for resonant absorption. However, the complex interaction between these pulses and biomolecular species is not well understood. To address this issue, we have studied the interaction of intense, femtosecond pulses with a number of amino acids and small peptides. Unlike previous studies, we have used neutral forms of these molecular targets, which allowed us to investigate dissociation of radical cations without the spectra being complicated by the action of mobile protons. We found fragmentation was dominated by fast, radical-initiated dissociation close to the charge site generated by the initial ionization or from subsequent ultrafast migration of this charge. Fragments with lower yields, which are useful for structural determinations, were also observed and attributed to radical migration caused by hydrogen atom transfer within the molecule.
Collapse
Affiliation(s)
- Martin J Duffy
- Centre for Plasma Physics, School of Mathematics and Physics, Queen's University Belfast, Belfast, UK
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
11
|
Brunet C, Antoine R, Dugourd P, Canon F, Giuliani A, Nahon L. Photo-induced electron detachment of protein polyanions in the VUV range. J Chem Phys 2013; 138:064301. [DOI: 10.1063/1.4790165] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
12
|
González-Magaña O, Reitsma G, Tiemens M, Boschman L, Hoekstra R, Schlathölter T. Near-Edge X-ray Absorption Mass Spectrometry of a Gas-Phase Peptide. J Phys Chem A 2012; 116:10745-51. [DOI: 10.1021/jp307527b] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- O. González-Magaña
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
| | - G. Reitsma
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
| | - M. Tiemens
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
| | - L. Boschman
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
- Kapteyn
Astronomical Institute, University of Groningen, Landleven 12, 9747AD Groningen,
The Netherlands
| | - R. Hoekstra
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
| | - T. Schlathölter
- KVI Atomic and Molecular Physics, University of Groningen, Zernikelaan 25, 9747AA Groningen,
The Netherlands
| |
Collapse
|
13
|
Giuliani A, Milosavljević AR, Hinsen K, Canon F, Nicolas C, Réfrégiers M, Nahon L. Structure and Charge-State Dependence of the Gas-Phase Ionization Energy of Proteins. Angew Chem Int Ed Engl 2012; 51:9552-6. [DOI: 10.1002/anie.201204435] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Indexed: 11/09/2022]
|
14
|
Giuliani A, Milosavljević AR, Hinsen K, Canon F, Nicolas C, Réfrégiers M, Nahon L. Structure and Charge-State Dependence of the Gas-Phase Ionization Energy of Proteins. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201204435] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|