Determination and Imaging of Small Biomolecules and Ions Using Ruthenium(II) Complex-Based Chemosensors

Luminescence chemosensors are one of the most useful tools for the determination and imaging of small biomolecules and ions in situ in real time. Based on the unique photo-physical/-chemical properties of ruthenium(II) (Ru(II)) complexes, the development of Ru(II) complex-based chemosensors has attracted increasing attention in recent years, and thus many Ru(II) complexes have been designed and synthesized for the detection of ions and small biomolecules in biological and environmental samples. In this work, we summarize the research advances in the development of Ru(II) complex-based chemosensors for the determination of ions and small biomolecules, including anions, metal ions, reactive biomolecules and amino acids, with a particular focus on binding/reaction-based chemosensors for the investigation of intracellular analytes’ evolution through luminescence analysis and imaging. The advances, challenges and future research directions in the development of Ru(II) complex-based chemosensors are also discussed.

Colorimetric fluoride detection in dimethyl sulfoxide using a heteroleptic ruthenium(ii) complex with amino and amide groups: X-ray crystallographic and spectroscopic analyses

A bis-heteroleptic ruthenium(ii) complex, [Ru(Hdpa)₂(H₂pia)]X₂ (1·X₂; X = Cl, OTf, or F; Hdpa = di-2-pyridylamine; H₂pia = 2-pycolinamide; OTf⁻ = CF₃SO₃⁻), was synthesized and spectroscopically and crystallographically characterized. The crystal structures of 1·Cl₂·2.5H₂O and 1·F₂·2EtOH revealed essentially identical geometries for the 1²⁺ dication; however, the dihedral angle between the two pyridyl groups in the Hdpa ligands, which represented the degree of bending of the bent conformation, was affected by hydrogen-bonding interactions between the NH group and counterions. In 1·F₂·2EtOH, one of the Hdpa ligands had an unusually smaller dihedral angle (15.8°) than the others (29.9°–35.0°). The two NH groups of each Hdpa ligand and the NH₂ group of the H₂pia ligand in 1²⁺ acted as receptors for F⁻ anion recognition via hydrogen-bonding interactions in a dimethyl sulfoxide (DMSO) solution, and the reaction showed an unambiguous color change in the visible region. Upon the addition of tetra-n-butylammonium fluoride to the red DMSO solution of 1·(OTf)₂·H₂O, the solution turned dark brown. ¹H NMR analysis and absorption spectroscopy of the reaction between 1²⁺ and the added F⁻ anions revealed that the F⁻ anions did not distinguish between the two amino groups of Hdpa and the amide group of H₂pia, although they were in different environments in the DMSO solution. A tris-F-adduct with 1²⁺, 1·F₃⁻, was formed when sufficient F⁻ anions were present in the solution, despite the presence of four NH protons in 1²⁺. Time-dependent DFT calculations of 1²⁺ and 1·F₃⁻ were consistent with their absorption spectra.

A bis-heteroleptic ruthenium(ii) complex; [Ru(Hdpa)₂(H₂pia)]X₂ (1·X₂; X = Cl, OTf, or F; Hdpa = di-2-pyridylamine; H₂pia = 2-pycolinamide; OTf^– = CF₃SO₃^–) was synthesized and spectroscopically and crystallographically characterized.

A pyrene-benzimidazole composed effective fluoride sensor: potential mimicking of a Boolean logic gate

A highly selective fluoride sensor based on a pyrene benzimidazole unit was developed and studied for recyclable memory function.

Piperazine linked salicylaldoxime and salicylaldimine-based dicopper(ii) receptors for anions

The syntheses and single crystal X-ray analyses of five strapped salicylaldoxime/salicylaldimine based dicopper(ii) receptors utilising a new piperazine linker are described. The complexes form 2 + 2 metallocycles and the molecular structures of all four complexes possess a small internal cavity with the utilisation of a short piperazine linker. The molecular structures of complexes [Cu2(L(4) - H)(L(4) - 2H) ⊂ DMF]BF4·DMF, and [Cu2(L(4) - H)2Br]Br·1.25DMSO·H2O·MeOH, show that intramolecular H-bonding interactions due to the presence of -OH (oxime moiety) groups lead to a Pacman-like cleft arrangement of the two metal coordinating subunits in the metallo-macrocycle. The geometrical constraints brought about by this constrained cleft make the receptor coordinate strongly to a bromide anion involving both metal centres as evidenced by whereas in the larger tetrafluroborate anion is excluded. Absence of the oxime moiety around the metal coordination site of the ligand as demonstrated in the complexes [Cu2(L(5))2BF4](BF4)3, and [Cu2(L(5))2Br]Br3·2MeOH, resulted in less constrained dicopper(ii) helicate forms. For these complexes no anion size discrimination was observed. The addition of pyridine solvent to a slightly modified piperazine-linked ligand produces an expanded 3 + 3 tube-like tricopper complex [Cu3(L(4a) - H)3Py3](BF4)2·(MeOH)3·PF6·(H2O)3, , with two coordinated pyridine molecules occupying the newly formed cavity.

A Hierarchical Self-Assembly System Built Up from Preorganized Tripodal Helical Metal Complexes

The hierarchical organization strategy has realized elaborate supramolecular structures that are difficult to achieve by a one-pot thermodynamically driven self-assembly. Self-assembly via Schiff base formation of the preorganized tripodal helical unit 2(2+), which is composed of the tris(bipyridyl) ligand 1 and octahedral metal ion (Ru(II) and Fe(II)), lead to two supramolecular structures, i.e., a macrobicyclic dimer and an interlocked helicate. Notably, the interlocked helicate had a unique motif with an elongated shape (∼ 58 Å) and linearly aligned metal centers with homochiral configurations (all-Δ or all-Λ), which shows potential for allosteric regulation based on the long-range transmittance of the structural information.

Phosphate-induced fluorescence of a tetraphenylethene-substituted tripodal tris(urea) receptor

The TPE-decorated tripodal tris(urea) L shows enhanced emission when binding to PO₄³⁻ ion, but weak or no fluorescence with other anions due to the different anion-binding mode.

Potential anion sensing properties by a redox and substitution series of [Ru(bpy)3−n(Hdpa)n]2+, n = 1–3; Hdpa = 2,2′-dipyridylamine: selective recognition and stoichiometric binding with cyanide and fluoride ions

Efficient anion sensors [Ru(bpy)_3−n(Hdpa)_n]²⁺, n = 1–3 have been developed for selective recognition of cyanide and fluoride ions with remarkable stoichiometric binding.

Anion recognition by oligo-(thio)urea-based receptors

Recent progress in the construction of metal-coordination-assisted and covalently connected oligourea receptors and their anion coordination chemistry is presented.

A Cyanuric Acid Platform Based Tripodal Bis-heteroleptic Ru(II) Complex of Click Generated Ligand for Selective Sensing of Phosphates via C-H···Anion Interaction

A new bis-heteroleptic trinuclear Ru(II) complex (1[PF6]6) has been synthesized from electron deficient cyanuric acid platform based copper-catalyzed azide-alkyne cycloaddition, i.e., CuAAC click generated ligand, 1,3,5-tris [(2-aminoethyl-1H-1,2,3-triazol-4-yl)-pyridine]-1,3,5-triazinane-2,4,6-trione (L1). Complex 1[PF6]6 displays weak luminescence (ϕf = 0.002) at room temperature with a short lifetime of ∼5 ns in acetonitrile. It shows selective sensing of hydrogen pyrophosphate (HP2O7(3-)) through 20-fold enhanced emission intensity (ϕf = 0.039) with a 15 nm red shift in emission maxima even in the presence of a large excess of various competitive anions like F(-), Cl(-), AcO(-), BzO(-), NO3(-), HCO3(-), HSO4(-), HO(-), and H2PO4(-) in acetonitrile. Selective change in the decay profile as well as in the lifetime of 1[PF6]6 in the presence of HP2O7(3-) (108 ns) further supports its selectivity toward HP2O7(3-). UV-vis and photoluminescence titration profiles and corresponding Job's plot analyses suggest 1:3 host-guest stoichiometric binding between 1[PF6]6 and HP2O7(3-). High emission enhancement of 1[PF6]6 in the presence of HP2O7(3-) has resulted in the detection limit of the anion being as low as 0.02 μM. However, 1[PF6]6 shows selectivity toward higher analogues of phosphates (e.g., ATP, ADP, and AMP) over HP2O7(3-)/H2PO4(-) in 10% Tris HCl buffer (10 mM)/acetonitrile medium. Downfield shifting of the triazole C-H in a (1)H NMR titration study confirms that the binding of HP2O7(3-)/H2PO4(-) is occurring via C-H···anion interaction. The single crystal X-ray structure of complex 1 having NO3(-) counteranion, 1[NO3]6 shows binding of NO3(-) with complex 1 via C-H···NO3(-) interactions.

Synthesis, characterization, photophysics, and anion binding properties of platinum(ii) acetylide complexes with urea group

The relationship between the structure and anion-binding ability of platinum(ii) acetylide complexes with urea group has been studied.

Anion recognition by cyclic peptides

Cyclic peptides provide excellent scaffolds for anion recognition and improved binding affinity and selectivity has been achieved through peptide backbone rigidification and the introduction of side chains bearing anion recognition groups.

Selective recognition of sulfate anions in a 95% ethanol solvent with a simple neutral salicylaldehyde dansyl hydrazine Schiff base tuned by Brønsted-Lowry acid-base reaction

A new Schiff base compound, 5-(dimethylamino)-N'-(2-hydroxybenzylidene)naphthalene-1-sulfonohydrazide (R), has been synthesized, characterized, and employed as a selective fluorescence receptor for the recognition of sulfate anions. UV-vis absorption, fluorescence emission, (1)H NMR spectra and DFT calculation studies on the system have been carried out to determine the nature of the interactions between R and anions. The results reveal that the deprotonation of the phenol without the need of a strong base leads to the formation of a hydrogen-bonding complex with a -SO2-NH- group, which is responsible for the spectra changes. The deprotonation process for the selectivity recognition of sulfate can be tuned by the Brønsted-Lowry acid-base reaction in nonaqueous solutions, revealing that suitable phenolic hydroxyl acidity is the key factor for anion recognition selectivity.

Sulfate-selective recognition by using neutral dipeptide anion receptors in aqueous solution

The synthesis of six small peptide anion receptors based on thiourea and squaramide recognition moieties is described. These new receptors bind to tetrahedral sulfate anions with remarkable affinity and selectivity in aqueous solution as shown by NMR spectroscopy. Molecular modelling suggests that selectivity is mediated by a hydrogen bond network incorporating the amide backbone protons in a manner similar to that found in the sulfate-binding protein.

Squaramide-based tripodal receptors for selective recognition of sulfate anion

Squaramide-based tripodal anion receptors have been prepared and their anion binding properties with various inorganic anions were investigated. Receptor formed a dimeric complex in solid state and a 1 : 1 complex in solution with SO(4)(2-). All receptors could selectively encapsulate SO(4)(2-)via hydrogen bonds over other examined anions.

Stepwise encapsulation of sulfate ions by ferrocenyl-functionalized tripodal hexaurea receptors

Three ferrocenyl-functionalized tripodal hexaurea anion receptors with ortho- (L(2)), meta- (L(3)), and para-phenylene (L(4)) bridges, which showed strong binding affinities toward sulfate ions, have been designed and synthesized. In particular, meta-phenylene-bridged ligand L(3), owing to its trigonal bipyramidal structure, can encapsulate two SO4(2-) ions in its "inner" and "outer" tripodal clefts, respectively, as supported by their clearly distinct NMR resonances and by molecular modeling. The sulfate complex of ortho-ligand L(2), (TBA)2[SO4⊂L(2)]·2H2O (1), displays a caged tetrahedral structure with an encapsulated sulfate ion that is hydrogen bonded by the six urea groups of ligand L(2). CV studies showed two types of electrochemical response of the ferrocene/ferrocenium redox couple upon anion binding, that is, a shift of the wave and the appearance of a new peak. Quantitative binding data were obtained from the NMR and CV titrations.