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Rodriguez-Mateos P, Ngamsom B, Iles A, Pamme N. Microscale immiscible phase magnetic processing for bioanalytical applications. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
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2
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Zhang Z, Zhao S, Jiang L, Wu J, Zhao W, Guo X, Peng N, Hu F. A sample-to-answer DNA detection microfluidic system integrating sample pretreatment and smartphone-readable gradient plasmonic photothermal continuous-flow PCR. Analyst 2022; 147:4876-4887. [DOI: 10.1039/d2an00908k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a microfluidic system integrating sample pretreatment and smartphone-readable gradient plasmonic photothermal continuous-flow PCR, paving the way for low-cost and rapid implementation of PCR diagnostics.
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Affiliation(s)
- Zengming Zhang
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Shuhao Zhao
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Lei Jiang
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Junjun Wu
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Wenhan Zhao
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Xiaoniu Guo
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Niancai Peng
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
| | - Fei Hu
- State Key Laboratory for Manufacturing Systems Engineering, Xi'an Jiaotong University No. 99, Yanxiang Road, Xi'an, 710054, P. R. China
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3
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Sharma S, Bhatia V. Magnetic nanoparticles in microfluidics-based diagnostics: an appraisal. Nanomedicine (Lond) 2021; 16:1329-1342. [PMID: 34027677 DOI: 10.2217/nnm-2021-0007] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
The use of magnetic nanoparticles (MNPs) in microfluidics based diagnostics is a classic case of micro-, nano- and bio-technology coming together to design extremely controllable, reproducible, and scalable nano and micro 'on-chip bio sensing systems.' In this review, applications of MNPs in microfluidics ranging from molecular diagnostics and immunodiagnostics to clinical uses have been examined. In addition, microfluidic mixing and capture of analytes using MNPs, and MNPs as carriers in microfluidic devices has been investigated. Finally, the challenges and future directions of this upcoming field have been summarized. The use of MNP-based microfluidic devices, will help in developing decentralized or 'point of care' testing globally, contributing to affordable healthcare, particularly, for middle- and low-income developing countries.
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Affiliation(s)
- Smriti Sharma
- Department of Chemistry, Miranda House, University of Delhi, India
| | - Vinayak Bhatia
- ICARE Eye Hospital & Postgraduate Institute, Noida, U.P., India
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4
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Ohashi T, Kuyama H. Magnetic particle transport through organogel - an application to DNA extraction. Anal Biochem 2020; 611:113932. [PMID: 32891594 DOI: 10.1016/j.ab.2020.113932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Revised: 08/18/2020] [Accepted: 08/26/2020] [Indexed: 12/23/2022]
Abstract
An observation that magnetic particles are transported through organogel encouraged us to investigate its feasibility of liquid-phase displacement in DNA extraction using magnetic particles. Organogel for this study was prepared from a gelator, 12-hydroxystearic acid (12-HSA), and an apolar solvent, methylphenylsilicone oil. The organogel is a gel-like solid material with hydrophobic and elastic properties. These properties, hydrophobicity, and elasticity were demonstrated to be advantageous for liquid compartmentalization and efficient liquid-phase displacement. The extracted DNA with using the organogel device was successfully detected off-chip by conventional real-time PCR.
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Affiliation(s)
- Tetsuo Ohashi
- Technology Research Laboratory, Shimadzu Corporation, 3-9-4 Hikaridai, Seika-cho, Soraku-gun, Kyoto, 619-0237, Japan.
| | - Hiroki Kuyama
- Technology Research Laboratory, Shimadzu Corporation, 3-9-4 Hikaridai, Seika-cho, Soraku-gun, Kyoto, 619-0237, Japan
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5
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Chen Y, Liu Y, Shi Y, Ping J, Wu J, Chen H. Magnetic particles for integrated nucleic acid purification, amplification and detection without pipetting. Trends Analyt Chem 2020; 127:115912. [PMID: 32382202 PMCID: PMC7202819 DOI: 10.1016/j.trac.2020.115912] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Nucleic acid amplification based detection plays an important role in food safety, environmental monitoring and clinical diagnosis. However, traditional nucleic acid detection process involves transferring liquid from one tube to another by pipetting. It requires trained persons, equipped labs and consumes lots of time. The ideal nucleic acid detection is integrated, closed, simplified and automated. Magnetic particles actuated by magnetic fields can efficiently adsorb nucleic acids and promote integrated nucleic acid assays without pipetting driven by pumps and centrifuges. We will comprehensively review magnetic particles assisted integrated system for nucleic acid detection and hope it can inspire further related study.
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Key Words
- ATP, adenosine triphosphate
- DLS, dynamic light scattering
- FMR, ferromagnetic resonance
- GTC, guanidinium thiocyanate
- ICP-AES, inductively coupled plasma atomic emission spectroscopy
- IFAST, immiscible filtration assisted by surface tension
- Immiscible interface
- Integrated detection
- LAMP, loop-mediated isothermal amplification
- Magnetic particles
- Nucleic acid
- PCR, polymerase chain reaction
- PEG, polyethylene glycol
- POCT, point-of-care testing
- RPA, recombinase polymerase amplification
- SQUID, superconducting quantum interference device magnetometer
- TEM, transmission electron microscopy
- XRD, X-Ray diffraction
- qPCR, quantitative PCR
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Affiliation(s)
- Yanju Chen
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Yang Liu
- Key Laboratory of Microbiol Technology and Bioinformatics of Zhejiang Province, Zhejiang Institute of Microbiology, Hangzhou, 310012, China
| | - Ya Shi
- Key Laboratory of Microbiol Technology and Bioinformatics of Zhejiang Province, Zhejiang Institute of Microbiology, Hangzhou, 310012, China
| | - Jianfeng Ping
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Jian Wu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
- Key Laboratory of on Site Processing Equipment for Agricultural Products, Ministry of Agriculture, Hangzhou, 310058, China
| | - Huan Chen
- Key Laboratory of Microbiol Technology and Bioinformatics of Zhejiang Province, Zhejiang Institute of Microbiology, Hangzhou, 310012, China
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6
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Xu L, Wang A, Li X, Oh KW. Passive micropumping in microfluidics for point-of-care testing. BIOMICROFLUIDICS 2020; 14:031503. [PMID: 32509049 PMCID: PMC7263483 DOI: 10.1063/5.0002169] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 05/14/2020] [Indexed: 05/11/2023]
Abstract
Suitable micropumping methods for flow control represent a major technical hurdle in the development of microfluidic systems for point-of-care testing (POCT). Passive micropumping for point-of-care microfluidic systems provides a promising solution to such challenges, in particular, passive micropumping based on capillary force and air transfer based on the air solubility and air permeability of specific materials. There have been numerous developments and applications of micropumping techniques that are relevant to the use in POCT. Compared with active pumping methods such as syringe pumps or pressure pumps, where the flow rate can be well-tuned independent of the design of the microfluidic devices or the property of the liquids, most passive micropumping methods still suffer flow-control problems. For example, the flow rate may be set once the device has been made, and the properties of liquids may affect the flow rate. However, the advantages of passive micropumping, which include simplicity, ease of use, and low cost, make it the best choice for POCT. Here, we present a systematic review of different types of passive micropumping that are suitable for POCT, alongside existing applications based on passive micropumping. Future trends in passive micropumping are also discussed.
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Affiliation(s)
- Linfeng Xu
- Department of Bioengineering and Therapeutic
Sciences, Schools of Medicine and Pharmacy, University of California San
Francisco, 1700 4th Street, Byers Hall 304, San Francisco, California
94158, USA
| | - Anyang Wang
- SMALL (Sensors and MicroActuators Learning Lab),
Department of Electrical Engineering, University at Buffalo, The State University of New
York, Buffalo, New York 14260, USA
| | - Xiangpeng Li
- Department of Bioengineering and Therapeutic
Sciences, Schools of Medicine and Pharmacy, University of California San
Francisco, 1700 4th Street, Byers Hall 304, San Francisco, California
94158, USA
| | - Kwang W. Oh
- SMALL (Sensors and MicroActuators Learning Lab),
Department of Electrical Engineering, University at Buffalo, The State University of New
York, Buffalo, New York 14260, USA
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7
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Bormashenko E. Moses effect: physics and applications. Adv Colloid Interface Sci 2019; 269:1-6. [PMID: 31026760 DOI: 10.1016/j.cis.2019.04.003] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 04/03/2019] [Accepted: 04/16/2019] [Indexed: 11/17/2022]
Abstract
Deformation of the surface of a diamagnetic liquid by a magnetic field is called the "Moses Effect". Magnetic fields of ca 0.5 T give rise to near surface dips with a depth of dozens of microns. The physics and applications of direct and inverse Moses effects are reviewed, including trapping and self-assembly of particles. Experimental techniques enabling visualization of the effects are surveyed. The impact of a magnetic field on micro- and macroscopic properties of liquids is addressed. The influence of surface tension on the shape of the near-surface dip formed in a diamagnetic liquid by magnetic field is reported. Floating of diamagnetic bodies driven by the Moses effect is treated. The "magnetic memory of water" in relation to the Moses Effect is discussed. The dynamics of self-healing of near-surface dips due to the Moses Effect is considered.
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Affiliation(s)
- Edward Bormashenko
- Ariel University, Engineering Faculty, Chemical Engineering, Biotechnology and Materials Department, P.O.B. 3, 407000 Ariel, Israel.
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8
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Deraney RN, Troiano D, Joseph R, Sam SS, Caliendo AM, Tripathi A. Vortex- and Centrifugation-Free Extraction of HIV-1 RNA. Mol Diagn Ther 2019; 23:419-427. [PMID: 30911908 PMCID: PMC11289783 DOI: 10.1007/s40291-019-00394-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
BACKGROUND AND OBJECTIVE HIV viral load measurements play a critical role in monitoring disease progression in those who are on antiretroviral treatment. In order to obtain an accurate measurement, rapid sample preparation techniques are required. There is an unmet need for HIV extraction instruments in resource-limited settings, where HIV prevalence is high. Therefore, the objective of our study was to develop a three-dimensional (3D) microfluidic system to extract HIV-1 RNA with minimal electricity and without complex laboratory instruments. METHODS A 3D microfluidic system was designed in which magnetic beads bound with nucleic acids move through immiscible oil-water interfaces to separate HIV-1 RNA from the sample. Polymerase chain reaction (PCR) amplification was used to quantify the total amount of HIV-1 RNA extracted as we optimized the system through chip design, bead type, carry-over volume, carrier RNA concentration, and elution buffer temperature. Additionally, the extraction efficiency of the 3D microfluidic system was evaluated by comparing with a Qiagen EZ1 Advanced XL instrument using 20 HIV-1-positive plasma samples. RESULTS Our method has near-perfect (100%) extraction efficiency in spiked serum samples with as little as 50 copies/mL starting sample. Furthermore, we report carry-over volumes of 0.31% ± 0.006% of total sample volume. Using the EZ1 Advanced XL as a gold standard, the average percentage HIV-1 RNA extracted using the microchip was observed to be 65.4% ± 24.6%. CONCLUSIONS From a clinical perspective, the success of our method opens up its possible use in diagnostic tests for HIV in the remote areas where access to vortexes and centrifuges is not available. Here we present a proof-of-concept device which, with further development, could be used for sample preparation at the point of care.
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Affiliation(s)
- Rachel N Deraney
- Center for Biomedical Engineering, School of Engineering, Brown University, 182 Hope Street, Providence, RI, 02912, USA
| | - Derek Troiano
- Center for Biomedical Engineering, School of Engineering, Brown University, 182 Hope Street, Providence, RI, 02912, USA
| | | | - Soya S Sam
- Division of Infectious Diseases, The Miriam Hospital, Providence, RI, USA
| | - Angela M Caliendo
- Department of Medicine, Warren Alpert Medical School of Brown University, Providence, RI, USA
| | - Anubhav Tripathi
- Center for Biomedical Engineering, School of Engineering, Brown University, 182 Hope Street, Providence, RI, 02912, USA.
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9
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Hu F, Li J, Peng N, Li Z, Zhang Z, Zhao S, Duan M, Tian H, Li L, Zhang P. Rapid isolation of cfDNA from large-volume whole blood on a centrifugal microfluidic chip based on immiscible phase filtration. Analyst 2019; 144:4162-4174. [DOI: 10.1039/c9an00493a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The C-IFAST device enabled the rapid isolation of cfDNA, from 4 ml whole blood to 50 μl elution, within 15 min.
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Affiliation(s)
- Fei Hu
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Juan Li
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Niancai Peng
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Zheng Li
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Zengming Zhang
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Shuhao Zhao
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Mingyue Duan
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Hui Tian
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Lei Li
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
| | - Peng Zhang
- State Key Laboratory for Manufacturing Systems Engineering
- Xi'an Jiaotong University
- Xi'an
- P. R. China
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10
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Yang Y, Zeng Y. Microfluidic communicating vessel chip for expedited and automated immunomagnetic assays. LAB ON A CHIP 2018; 18:3830-3839. [PMID: 30394473 PMCID: PMC6279511 DOI: 10.1039/c8lc00927a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Rapid, sensitive analysis of protein biomarkers is of tremendous biological and clinical significance. Immunoassays are workhorse tools for protein analysis and have been under continuous investigation to develop new methods and to improve the analytical performance. Herein we report a pneumatically gated microfluidic communicating vessel (μCOVE) chip for rapid and sensitive immunomagnetic ELISA. A distinct feature of our device is that it employs the communicating vessel principle as a simple means to generate a fast transient hydrodynamic flow to enable effective flow washing without the need for excessive incubation, which greatly simplifies and expedites the assay workflow, compared to conventional microfluidic flow-based immunoassays. Stationary multi-phase microfluidic techniques have been developed for fast bead washing. However, they have some limitations, such as the need for careful control of interfacial properties, large bead quantity required for reliable interphase bead transport, and relatively high bead loss during surface tension-gated traverse. Our single-phase μCOVE chip can overcome such limitations and facilitate the manipulation of magnetic beads to streamline the assay workflow. We showed that the μCOVE device affords highly sensitive quantification of the CEA and EGFR proteins with a LOD down to the sub-picogram per mL level. Direct detection of the EGFR in the crude A431 cell lysate was also demonstrated to further validate the ability of our device for rapid and quantitative analysis of complex biological samples. Overall, our work presents a unique platform that combines the merits of the stationary multi-phase systems and the flow-based microfluidics. This novel immunoassay microsystem has promising potential for a broad range of biological and clinical applications, owing to its simplicity and high performance.
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Affiliation(s)
- Yang Yang
- Department of Chemistry, University of Kansas, Lawrence, KS 66045, USA.
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11
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Zilberzwige-Tal S, Gazit E. Go with the Flow-Microfluidics Approaches for Amyloid Research. Chem Asian J 2018; 13:3437-3447. [PMID: 30117682 DOI: 10.1002/asia.201801007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Indexed: 12/19/2022]
Abstract
The rapid development of cost-efficient microfluidic devices has received tremendous attention from scientists of diverse fields. The growing potential of utilizing microfluidic platforms has further advanced the ability to integrate existing technology into microfluidic devices. Thus, allowing scientists to approach questions in fundamental fields, such as amyloid research, using new and otherwise unachievable conditions. Amyloids are associated with neurodegeneration and are in the forefront of many research efforts worldwide. The newly emerged microfluidic technology can serve as a novel research tool providing a platform for developing new methods in this field. In this review, we summarize the recent progress in amyloid research using microfluidic approaches. These approaches are driven from various fields, including physical chemistry, electrochemistry, biochemistry, and cell biology. Moreover, the new insights into novel microfluidic approaches for amyloid research reviewed here can be easily modified for other research interests.
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Affiliation(s)
- Shai Zilberzwige-Tal
- Department of Molecular Microbiology and Biotechnology, School of Molecular Cell Biology and Biotechnology,George S. Wise Faculty of Life Sciences, Tel Aviv University⋅, Tel Aviv, 69978, Israel
| | - Ehud Gazit
- Department of Materials Science and Engineering, Iby and Aladar Fleischman Faculty of Engineering, Tel Aviv University, Tel Aviv, 69978, Israel.,Department of Molecular Microbiology and Biotechnology, School of Molecular Cell Biology and Biotechnology,George S. Wise Faculty of Life Sciences, Tel Aviv University⋅, Tel Aviv, 69978, Israel
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12
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Fast and sensitive isothermal DNA assay using microbead dielectrophoresis for detection of anti-microbial resistance genes. Biosens Bioelectron 2018; 117:583-589. [PMID: 30005377 DOI: 10.1016/j.bios.2018.06.063] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 06/23/2018] [Accepted: 06/28/2018] [Indexed: 12/21/2022]
Abstract
Antimicrobial resistant pathogens are a growing worldwide threat to human health. This study describes a novel method for rapid and sensitive detection of antimicrobial resistance (AMR) genes, specifically blaCTX-M-15 which encodes for the enzyme that offers resistance to extended spectrum β-lactam antibiotics. The method combines isothermal DNA amplification by recombinase polymerase amplification (RPA), with microbead dielectrophoresis (DEP)-based DNA detection. The RPA amplicon is captured onto dielectric microbeads, and the amount of amplicon determined by dielectrophoretic impedance measurement (DEPIM) of the microbeads. Amplicon-labeled microbeads were prepared by either a two-step or one-step method. A purified recombinant plasmid containing blaCTX-M-15 and genomic DNA (with plasmid) extracted from an AMR bacteria (Escherichia coli NCTC 13441) were used as target samples. A one-step method in which RPA and DNA immobilization on the microbeads is carried out simultaneously, has a detection limit of 2 copies/reaction for pure plasmid and 50 copies/reaction for genomic DNA. The assays are quantitative with a dynamic range up to 105 copies/reaction, with a total detection time of 26 min. Both methods are easy, rapid, and unlike lateral flow detection are quantitative.
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13
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Wang M, Xiong Y, Liu L, Peng G. LBM Investigation of Immiscible Displacement in a Channel with Regular Surface Roughness. Transp Porous Media 2018. [DOI: 10.1007/s11242-018-1032-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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14
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Serra M, Ferraro D, Pereiro I, Viovy JL, Descroix S. The power of solid supports in multiphase and droplet-based microfluidics: towards clinical applications. LAB ON A CHIP 2017; 17:3979-3999. [PMID: 28948991 DOI: 10.1039/c7lc00582b] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Multiphase and droplet microfluidic systems are growing in relevance in bioanalytical-related fields, especially due to the increased sensitivity, faster reaction times and lower sample/reagent consumption of many of its derived bioassays. Often applied to homogeneous (liquid/liquid) reactions, innovative strategies for the implementation of heterogeneous (typically solid/liquid) processes have recently been proposed. These involve, for example, the extraction and purification of target analytes from complex matrices or the implementation of multi-step protocols requiring efficient washing steps. To achieve this, solid supports such as functionalized particles (micro or nanometric) presenting different physical properties (e.g. magnetic, optical or others) are used for the binding of specific entities. The manipulation of such supports with different microfluidic principles has both led to the miniaturization of existing biomedical protocols and the development of completely new strategies for diagnostics and research. In this review, multiphase and droplet-based microfluidic systems using solid suspensions are presented and discussed with a particular focus on: i) working principles and technological developments of the manipulation strategies and ii) applications, critically discussing the level of maturity of these systems, which can range from initial proofs of concept to real clinical validations.
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Affiliation(s)
- M Serra
- Laboratoire Physico Chimie Curie, Institut Curie, PSL Research University, CNRS UMR168, Paris, France.
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15
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Neto MF, Butzler MA, Reed JL, Rui X, Fisher MJ, Kelso DM, McFall SM. Immiscible phase filter extraction and equivalent amplification of genotypes 1-6 of hepatitis C RNA: The building blocks for point-of-care diagnosis. J Virol Methods 2017; 248:107-115. [PMID: 28673855 DOI: 10.1016/j.jviromet.2017.06.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Revised: 06/28/2017] [Accepted: 06/29/2017] [Indexed: 12/11/2022]
Abstract
The lack of hepatitis C virus (HCV) diagnostic tests designed for use in decentralized settings is a major obstacle for providing access to treatment and prevention services particularly in low and middle income countries. Here we describe the development and validation of two building blocks of the HCV Quant Assay, a test in development for point-of-care use: 1) an RT-qPCR assay with noncompetitive internal control that equivalently detects the 6 major HCV genotypes and 2) an automated sample prep method using immiscible phase filter technology. This novel assay has wide dynamic range of HCV quantification and a limit of detection of 30IU/ml with 200μl specimen volume. In a preliminary study of 61 clinical specimens, the HCV Quant Assay demonstrated 100% sensitivity and specificity and gave comparable viral load results across 4 logs of IU/ml when compared to the Abbott RealTime HCV Assay.
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Affiliation(s)
- Mário F Neto
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA; University of Illinois Incubator Lab Facility, Chicago, IL 60612, USA
| | - Matthew A Butzler
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA
| | - Jennifer L Reed
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA
| | - Xiang Rui
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA
| | - Mark J Fisher
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA
| | - David M Kelso
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA
| | - Sally M McFall
- Center for Innovation in Global Health Technologies, Northwestern University, Evanston, IL 60208, USA.
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16
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Troiano D, Deraney RN, Tripathi A. Effect of surfactants on carryover liquid volume in immiscible phase magnetic bead separation. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2016.10.039] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Microchip-based ultrafast serodiagnostic assay for tuberculosis. Sci Rep 2016; 6:35845. [PMID: 27775039 PMCID: PMC5075771 DOI: 10.1038/srep35845] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 09/26/2016] [Indexed: 12/02/2022] Open
Abstract
Access to point-of-care (POC), rapid, inexpensive, sensitive, and instrument-free tests for the diagnosis of tuberculosis (TB) remains a major challenge. Here, we report a simple and low-cost microchip-based TB ELISA (MTBE) platform for the detection of anti-mycobacterial IgG in plasma samples in less than 15 minutes. The MTBE employs a flow-less, magnet-actuated, bead-based ELISA for simultaneous detection of IgG responses against multiple mycobacterial antigens. Anti-trehalose 6,6′-dimycolate (TDM) IgG responses were the strongest predictor for differentiating active tuberculosis (ATB) from healthy controls (HC) and latent tuberculosis infections (LTBI). The TDM-based MTBE demonstrated superior sensitivity compared to sputum microscopy (72% vs. 56%) with 80% and 63% positivity among smear-positive and smear-negative confirmed ATB samples, respectively. Receiver operating characteristic analysis indicated good accuracy for differentiating ATB from HC (AUC = 0.77). Thus, TDM-based MTBE can be potentially used as a screening device for rapid diagnosis of active TB at the POC.
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Chattopadhyay S, Kaur A, Jain S, Sabharwal PK, Singh H. Functionalized polymeric magnetic nanoconstructs for selective capturing and sensitive detection of Salmonella typhimurium. Anal Chim Acta 2016; 937:127-35. [DOI: 10.1016/j.aca.2016.07.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 07/06/2016] [Accepted: 07/11/2016] [Indexed: 10/21/2022]
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Berry SM, Pezzi HM, LaVanway AJ, Guckenberger D, Anderson M, Beebe DJ. AirJump: Using Interfaces to Instantly Perform Simultaneous Extractions. ACS APPLIED MATERIALS & INTERFACES 2016; 8:15040-5. [PMID: 27249333 PMCID: PMC5058634 DOI: 10.1021/acsami.6b02555] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Analyte isolation is an important process that spans a range of biomedical disciplines, including diagnostics, research, and forensics. While downstream analytical techniques have advanced in terms of both capability and throughput, analyte isolation technology has lagged behind, increasingly becoming the bottleneck in these processes. Thus, there exists a need for simple, fast, and easy to integrate analyte separation protocols to alleviate this bottleneck. Recently, a new class of technologies has emerged that leverages the movement of paramagnetic particle (PMP)-bound analytes through phase barriers to achieve a high efficiency separation in a single or a few steps. Specifically, the passage of a PMP/analyte aggregate through a phase interface (aqueous/air in this case) acts to efficiently "exclude" unbound (contaminant) material from PMP-bound analytes with higher efficiency than traditional washing-based solid-phase extraction (SPE) protocols (i.e., bind, wash several times, elute). Here, we describe for the first time a new type of "exclusion-based" sample preparation, which we term "AirJump". Upon realizing that much of the contaminant carryover stems from interactions with the sample vessel surface (e.g., pipetting residue, wetting), we aim to eliminate the influence of that factor. Thus, AirJump isolates PMP-bound analyte by "jumping" analyte directly out of a free liquid/air interface. Through careful characterization, we have demonstrated the validity of AirJump isolation through comparison to traditional washing-based isolations. Additionally, we have confirmed the suitability of AirJump in three important independent biological isolations, including protein immunoprecipitation, viral RNA isolation, and cell culture gene expression analysis. Taken together, these data sets demonstrate that AirJump performs efficiently, with high analyte yield, high purity, no cross contamination, rapid time-to-isolation, and excellent reproducibility.
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21
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Mosley O, Melling L, Tarn MD, Kemp C, Esfahani MMN, Pamme N, Shaw KJ. Sample introduction interface for on-chip nucleic acid-based analysis of Helicobacter pylori from stool samples. LAB ON A CHIP 2016; 16:2108-15. [PMID: 27164181 DOI: 10.1039/c6lc00228e] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Despite recent advances in microfluidic-based integrated diagnostic systems, the sample introduction interface, especially with regards to large volume samples, has often been neglected. We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). The principle of IFAST (immiscible filtration assisted by surface tension) was adapted to include a large volume sample chamber with a septum-based interface for stool sample introduction. Solid chaotropic salt and dry superparamagnetic particles (PMPs) could be stored on-chip and reconstituted upon sample addition, simplifying the process of release of DNA from H. pylori cells and its binding to the PMPs. Finally, the PMPs were pulled via a magnet through a washing chamber containing an immiscible oil solution and into an elution chamber where the DNA was released into aqueous media for subsequent analysis. The entire process required only 7 min while enabling a 40-fold reduction in working volume from crude biological samples. The combination of a real-world interface and rapid DNA extraction offers the potential for the methodology to be used in point-of-care (POC) devices.
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Affiliation(s)
- O Mosley
- Faculty of Science and Engineering, Manchester Metropolitan University, Chester Street, Manchester, M1 5GD, UK.
| | - L Melling
- Faculty of Science and Engineering, Manchester Metropolitan University, Chester Street, Manchester, M1 5GD, UK.
| | - M D Tarn
- Department of Chemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
| | - C Kemp
- Department of Chemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
| | - M M N Esfahani
- School of Engineering, University of Hull, Cottingham Road, Hull, HU6 7RX, UK
| | - N Pamme
- Department of Chemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
| | - K J Shaw
- Faculty of Science and Engineering, Manchester Metropolitan University, Chester Street, Manchester, M1 5GD, UK.
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22
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Jue E, Schoepp NG, Witters D, Ismagilov RF. Evaluating 3D printing to solve the sample-to-device interface for LRS and POC diagnostics: example of an interlock meter-mix device for metering and lysing clinical urine samples. LAB ON A CHIP 2016; 16:1852-60. [PMID: 27122199 DOI: 10.1039/c6lc00292g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
This paper evaluates the potential of 3D printing, a semi-automated additive prototyping technology, as a means to design and prototype a sample-to-device interface, amenable to diagnostics in limited-resource settings, where speed, accuracy and user-friendly design are critical components. As a test case, we built and validated an interlock meter-mix device for accurately metering and lysing human urine samples for use in downstream nucleic acid amplification. Two plungers and a multivalve generated and controlled fluid flow through the device and demonstrate the utility of 3D printing to create leak-free seals. Device operation consists of three simple steps that must be performed sequentially, eliminating manual pipetting and vortexing to provide rapid (5 to 10 s) and accurate metering and mixing. Bretherton's prediction was applied, using the bond number to guide a design that prevents potentially biohazardous samples from leaking from the device. We employed multi-material 3D printing technology, which allows composites with rigid and elastomeric properties to be printed as a single part. To validate the meter-mix device with a clinically relevant sample, we used urine spiked with inactivated Chlamydia trachomatis and Neisseria gonorrhoeae. A downstream nucleic acid amplification by quantitative PCR (qPCR) confirmed there was no statistically significant difference between samples metered and mixed using the standard protocol and those prepared with the meter-mix device, showing the 3D-printed device could accurately meter, mix and dispense a human urine sample without loss of nucleic acids. Although there are some limitations to 3D printing capabilities (e.g. dimension limitations related to support material used in the printing process), the advantages of customizability, modularity and rapid prototyping illustrate the utility of 3D printing for developing sample-to-device interfaces for diagnostics.
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Affiliation(s)
- Erik Jue
- Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA, USA.
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23
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Cui FR, Wang J, Opal SM, Tripathi A. Isolating Influenza RNA from Clinical Samples Using Microfluidic Oil-Water Interfaces. PLoS One 2016; 11:e0149522. [PMID: 26886007 PMCID: PMC4757531 DOI: 10.1371/journal.pone.0149522] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Accepted: 02/02/2016] [Indexed: 11/21/2022] Open
Abstract
The effective and robust separation of biomolecules of interest from patient samples is an essential step in diagnostic applications. We present a platform for the fast extraction of nucleic acids from clinical specimens utilizing paramagnetic PMPs, an oil-water interface, a small permanent magnet and a microfluidic channel to separate and purify captured nucleic acids from lysate in less than one minute, circumventing the need for multiple washing steps and greatly simplifying and expediting the purification procedure. Our device was able to isolate influenza RNA from clinical nasopharyngeal swab samples with high efficiency when compared to the Ambion® MagMAXTM Viral RNA Isolation Kit, sufficiently separating nucleic acid analytes from PCR-inhibiting contaminants within the lysate while also critically maintaining high integrity of the viral genome. We find that this design has great potential for rapid, efficient and sensitive nucleic acid separation from patient sample.
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Affiliation(s)
- Francis R. Cui
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island, United States of America
| | - Jingjing Wang
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island, United States of America
| | - Steven M. Opal
- Warren Alpert Medical School, Brown University, Providence, Rhode Island, United States of America
- Memorial Hospital of Rhode Island, Pawtucket, Rhode Island, United States of America
| | - Anubhav Tripathi
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island, United States of America
- * E-mail:
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24
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Zhang L, Deraney RN, Tripathi A. Adsorption and isolation of nucleic acids on cellulose magnetic beads using a three-dimensional printed microfluidic chip. BIOMICROFLUIDICS 2015; 9:064118. [PMID: 26734116 PMCID: PMC4693444 DOI: 10.1063/1.4938559] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2015] [Accepted: 12/11/2015] [Indexed: 05/04/2023]
Abstract
While advances in genomics have enabled sensitive and highly parallel detection of nucleic acid targets, the isolation and extraction of the nucleic acids remain a critical bottleneck in the workflow. We present here a simple 3D printed microfluidic chip that allows for the vortex and centrifugation free extraction of nucleic acids. This novel microfluidic chip utilizes the presence of a water and oil interface to filter out the lysate contaminants. The pure nucleic acids, while bound on cellulose particles, are magnetically moved across the oil layer. We demonstrated efficient and rapid extraction of spiked Human Papillomavirus (HPV) 18 plasmids in specimen transport medium, in under 15 min. An overall extraction efficiency of 61% is observed across a range of HPV plasmid concentrations (5 × 10(1) to 5 × 10(6) copies/100 μl). The magnetic, interfacial, and viscous drag forces inside the microgeometries of the chip are modeled. We have also developed a kinetics model for the adsorption of nucleic acids on cellulose functionalized superparamagnetic beads. We also clarify here the role of carrier nucleic acids in the adsorption and isolation of nucleic acids. Based on the various mechanistic insights detailed here, customized microfluidic devices can be designed to meet the range of current and emerging point of care diagnostics needs.
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Affiliation(s)
- Lei Zhang
- Center for Biomedical Engineering, School of Engineering, Brown University , Providence, Rhode Island 02912, USA
| | - Rachel N Deraney
- Center for Biomedical Engineering, School of Engineering, Brown University , Providence, Rhode Island 02912, USA
| | - Anubhav Tripathi
- Center for Biomedical Engineering, School of Engineering, Brown University , Providence, Rhode Island 02912, USA
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25
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Liébana S, Brandão D, Cortés P, Campoy S, Alegret S, Pividori MI. Electrochemical genosensing of Salmonella, Listeria and Escherichia coli on silica magnetic particles. Anal Chim Acta 2015; 904:1-9. [PMID: 26724759 DOI: 10.1016/j.aca.2015.09.044] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2015] [Revised: 09/17/2015] [Accepted: 09/23/2015] [Indexed: 11/17/2022]
Abstract
A magneto-genosensing approach for the detection of the three most common pathogenic bacteria in food safety, such as Salmonella, Listeria and Escherichia coli is presented. The methodology is based on the detection of the tagged amplified DNA obtained by single-tagging PCR with a set of specific primers for each pathogen, followed by electrochemical magneto-genosensing on silica magnetic particles. A set of primers were selected for the amplification of the invA (278 bp), prfA (217 bp) and eaeA (151 bp) being one of the primers for each set tagged with fluorescein, biotin and digoxigenin coding for Salmonella enterica, Listeria monocytogenes and E. coli, respectively. The single-tagged amplicons were then immobilized on silica MPs based on the nucleic acid-binding properties of silica particles in the presence of the chaotropic agent as guanidinium thiocyanate. The assessment of the silica MPs as a platform for electrochemical magneto-genosensing is described, including the main parameters to selectively attach longer dsDNA fragments instead of shorter ssDNA primers based on their negative charge density of the sugar-phosphate backbone. This approach resulted to be a promising detection tool with sensing features of rapidity and sensitivity very suitable to be implemented on DNA biosensors and microfluidic platforms.
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Affiliation(s)
- Susana Liébana
- Grup de Sensors i Biosensors, Departament de Química, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain
| | - Delfina Brandão
- Grup de Sensors i Biosensors, Departament de Química, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain
| | - Pilar Cortés
- Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain
| | - Susana Campoy
- Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain
| | - Salvador Alegret
- Grup de Sensors i Biosensors, Departament de Química, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain
| | - María Isabel Pividori
- Grup de Sensors i Biosensors, Departament de Química, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès (Bellaterra), Spain.
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26
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Abstract
Fast and reliable diagnoses are invaluable in clinical care. Samples (e.g., blood, urine, and saliva) are collected and analyzed for various biomarkers to quickly and sensitively assess disease progression, monitor response to treatment, and determine a patient's prognosis. Processing conventional samples entails many manual time-consuming steps. Consequently, clinical specimens must be processed by skilled technicians before antigens or nucleic acids are detected, and these are often present at dilute concentrations. Recently, several automated microchip technologies have been developed that potentially offer many advantages over traditional bench-top extraction methods. The smaller length scales and more refined transport mechanisms that characterize these microfluidic devices enable faster and more efficient biomarker enrichment and extraction. Additionally, they can be designed to perform multiple tests or experimental steps on one integrated, automated platform. This review explores the current research on microfluidic methods of sample preparation that are designed to aid diagnosis, and covers a broad spectrum of extraction techniques and designs for various types of samples and analytes.
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Affiliation(s)
- Francis Cui
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island 02912;
| | - Minsoung Rhee
- Sandia National Laboratories, Livermore, California 94551-0969
| | - Anup Singh
- Sandia National Laboratories, Livermore, California 94551-0969
| | - Anubhav Tripathi
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island 02912;
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27
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van Reenen A, de Jong AM, Prins MWJ. Transportation, dispersion and ordering of dense colloidal assemblies by magnetic interfacial rotaphoresis. LAB ON A CHIP 2015; 15:2864-2871. [PMID: 26023744 DOI: 10.1039/c5lc00294j] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Colloidal systems exhibit intriguing assembly phenomena with impact in a wide variety of technological fields. The use of magnetically responsive colloids allows one to exploit interactions with an anisotropic dipolar nature. Here, we reveal magnetic interfacial rotaphoresis - a magnetically-induced rotational excitation that imposes a translational motion on colloids by a strong interaction with a solid-liquid interface - as a means to transport, disperse, and order dense colloidal assemblies. By balancing magnetic dipolar and hydrodynamic interactions at a symmetry-breaking interface, rotaphoresis effectuates a translational dispersive motion of the colloids and surprisingly transforms large and dense multilayer assemblies into single-particle layers with quasi-hexagonal ordering within seconds and with velocities of mm s(-1). We demonstrate the application of interfacial rotaphoresis to enhance molecular target capture, showing an increase of the molecular capture rate by more than an order of magnitude.
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Affiliation(s)
- A van Reenen
- Department of Applied Physics, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
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28
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Byrnes SA, Bishop JD, Lafleur L, Buser JR, Lutz B, Yager P. One-step purification and concentration of DNA in porous membranes for point-of-care applications. LAB ON A CHIP 2015; 15:2647-59. [PMID: 25989457 DOI: 10.1039/c5lc00317b] [Citation(s) in RCA: 66] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The emergence of rapid, user-friendly, point-of-care (POC) diagnostic systems is paving the way for better disease diagnosis and control. Lately, there has been a strong emphasis on developing molecular-based diagnostics due to their potential for greatly increased sensitivity and specificity. One of the most critical steps in developing practical diagnostic systems is the ability to perform sample preparation, especially the purification of nucleic acids (NA), at the POC. As such, we have developed a simple-to-use, inexpensive, and disposable sample preparation system for in-membrane purification and concentration of NAs. This system couples lateral flow in a porous membrane with chitosan, a linear polysaccharide that captures NAs via anion exchange chromatography. The system can also substantially concentrate the NAs. The combination of these capabilities can be used on a wide range of sample types, which are prepared for use in downstream processes, such as qPCR, without further purification.
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Affiliation(s)
- S A Byrnes
- University of Washington, Department of Bioengineering, 3720 15th Ave NE, Seattle, WA 98195, USA.
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29
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Kim JA, Kim M, Kang SM, Lim KT, Kim TS, Kang JY. Magnetic bead droplet immunoassay of oligomer amyloid β for the diagnosis of Alzheimer′s disease using micro-pillars to enhance the stability of the oil–water interface. Biosens Bioelectron 2015; 67:724-32. [DOI: 10.1016/j.bios.2014.10.042] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2014] [Revised: 09/30/2014] [Accepted: 10/13/2014] [Indexed: 11/24/2022]
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30
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Kühnemund M, Witters D, Nilsson M, Lammertyn J. Circle-to-circle amplification on a digital microfluidic chip for amplified single molecule detection. LAB ON A CHIP 2014; 14:2983-2992. [PMID: 24934991 DOI: 10.1039/c4lc00348a] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We demonstrate a novel digital microfluidic nucleic acid amplification concept which is based on padlock probe mediated DNA detection and isothermal circle-to-circle amplification (C2CA). This assay platform combines two digital approaches. First, digital microfluidic manipulation of droplets which serve as micro-reaction chambers and shuttling magnetic particles between these droplets facilitates the integration of complex solid phase multistep assays. We demonstrate an optimized novel particle extraction and transfer protocol for superparamagnetic particles on a digital microfluidic chip that allows for nearly 100% extraction efficiencies securing high assay performance. Second, the compartmentalization required for digital single molecule detection is solved by simple molecular biological means, circumventing the need for complex microfabrication procedures necessary for most, if not all, other digital nucleic acid detection methods. For that purpose, padlock probes are circularized in a strictly target dependent ligation reaction and amplified through two rounds of rolling circle amplification, including an intermediate digestion step. The reaction results in hundreds of 500 nm sized individually countable DNA nanospheres per detected target molecule. We demonstrate that integrated miniaturized digital microfluidic C2CA results in equally high numbers of C2CA products μL(-1) as off-chip tube control experiments indicating high assay performance without signal loss. As low as 1 aM synthetic Pseudomonas aeruginosa DNA was detected with a linear dynamic range over 4 orders of magnitude up to 10 fM proving excellent suitability for infectious disease diagnostics.
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Affiliation(s)
- Malte Kühnemund
- Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Box 815, 751 08 Uppsala, Sweden
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31
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Phurimsak C, Yildirim E, Tarn MD, Trietsch SJ, Hankemeier T, Pamme N, Vulto P. Phaseguide assisted liquid lamination for magnetic particle-based assays. LAB ON A CHIP 2014; 14:2334-2343. [PMID: 24832933 DOI: 10.1039/c4lc00139g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We have developed a magnetic particle-based assay platform in which functionalised magnetic particles are transferred sequentially through laminated volumes of reagents and washing buffers. Lamination of aqueous liquids is achieved via the use of phaseguide technology; microstructures that control the advancing air-liquid interface of solutions as they enter a microfluidic chamber. This allows manual filling of the device, eliminating the need for external pumping systems, and preparation of the system requires only a few minutes. Here, we apply the platform to two on-chip strategies: (i) a one-step streptavidin-biotin binding assay, and (ii) a two-step C-reactive protein immunoassay. With these, we demonstrate how condensing multiple reaction and washing processes into a single step significantly reduces procedural times, with both assay procedures requiring less than 8 seconds.
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Affiliation(s)
- Chayakom Phurimsak
- Department of Chemistry, The University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
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32
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Casavant B, Guckenberger DJ, Beebe DJ, Berry SM. Efficient sample preparation from complex biological samples using a sliding lid for immobilized droplet extractions. Anal Chem 2014; 86:6355-62. [PMID: 24927449 PMCID: PMC4079323 DOI: 10.1021/ac500574t] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Accepted: 05/20/2014] [Indexed: 01/25/2023]
Abstract
Sample preparation is a major bottleneck in many biological processes. Paramagnetic particles (PMPs) are a ubiquitous method for isolating analytes of interest from biological samples and are used for their ability to thoroughly sample a solution and be easily collected with a magnet. There are three main methods by which PMPs are used for sample preparation: (1) removal of fluid from the analyte-bound PMPs, (2) removal of analyte-bound PMPs from the solution, and (3) removal of the substrate (with immobilized analyte-bound PMPs). In this paper, we explore the third and least studied method for PMP-based sample preparation using a platform termed Sliding Lid for Immobilized Droplet Extractions (SLIDE). SLIDE leverages principles of surface tension and patterned hydrophobicity to create a simple-to-operate platform for sample isolation (cells, DNA, RNA, protein) and preparation (cell staining) without the need for time-intensive wash steps, use of immiscible fluids, or precise pinning geometries. Compared to other standard isolation protocols using PMPs, SLIDE is able to perform rapid sample preparation with low (0.6%) carryover of contaminants from the original sample. The natural recirculation occurring within the pinned droplets of SLIDE make possible the performance of multistep cell staining protocols within the SLIDE by simply resting the lid over the various sample droplets. SLIDE demonstrates a simple easy to use platform for sample preparation on a range of complex biological samples.
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Affiliation(s)
| | | | - David J. Beebe
- Department of Biomedical
Engineering, Wisconsin Institutes for Medical Research, University of Wisconsin, Madison, Wisconsin 53705, United States
| | - Scott M. Berry
- Department of Biomedical
Engineering, Wisconsin Institutes for Medical Research, University of Wisconsin, Madison, Wisconsin 53705, United States
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33
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van Reenen A, de Jong AM, den Toonder JMJ, Prins MWJ. Integrated lab-on-chip biosensing systems based on magnetic particle actuation--a comprehensive review. LAB ON A CHIP 2014; 14:1966-86. [PMID: 24806093 DOI: 10.1039/c3lc51454d] [Citation(s) in RCA: 141] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The demand for easy to use and cost effective medical technologies inspires scientists to develop innovative lab-on-chip technologies for point-of-care in vitro diagnostic testing. To fulfill medical needs, the tests should be rapid, sensitive, quantitative, and miniaturizable, and need to integrate all steps from sample-in to result-out. Here, we review the use of magnetic particles actuated by magnetic fields to perform the different process steps that are required for integrated lab-on-chip diagnostic assays. We discuss the use of magnetic particles to mix fluids, to capture specific analytes, to concentrate analytes, to transfer analytes from one solution to another, to label analytes, to perform stringency and washing steps, and to probe biophysical properties of the analytes, distinguishing methodologies with fluid flow and without fluid flow (stationary microfluidics). Our review focuses on efforts to combine and integrate different magnetically actuated assay steps, with the vision that it will become possible in the future to realize integrated lab-on-chip biosensing assays in which all assay process steps are controlled and optimized by magnetic forces.
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Affiliation(s)
- Alexander van Reenen
- Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands.
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34
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Khnouf R, Goet G, Baier T, Hardt S. Increasing the sensitivity of microfluidics based immunoassays using isotachophoresis. Analyst 2014; 139:4564-71. [DOI: 10.1039/c4an00545g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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35
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van Reenen A, Gao Y, de Jong AM, Hulsen MA, den Toonder JMJ, Prins MWJ. Dynamics of magnetic particles near a surface: model and experiments on field-induced disaggregation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:042306. [PMID: 24827250 DOI: 10.1103/physreve.89.042306] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2013] [Indexed: 06/03/2023]
Abstract
Magnetic particles are widely used in biological research and bioanalytical applications. As the corresponding tools are progressively being miniaturized and integrated, the understanding of particle dynamics and the control of particles down to the level of single particles become important. Here, we describe a numerical model to simulate the dynamic behavior of ensembles of magnetic particles, taking account of magnetic interparticle interactions, interactions with the liquid medium and solid surfaces, as well as thermal diffusive motion of the particles. The model is verified using experimental data of magnetic field-induced disaggregation of magnetic particle clusters near a physical surface, wherein the magnetic field properties, particle size, cluster size, and cluster geometry were varied. Furthermore, the model clarifies how the cluster configuration, cluster alignment, magnitude of the field gradient, and the field repetition rate play a role in the particle disaggregation process. The simulation model will be very useful for further in silico studies on magnetic particle dynamics in biotechnological tools.
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Affiliation(s)
- A van Reenen
- Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands and Institute for Complex Molecular Systems (ICMS), Eindhoven, The Netherlands
| | - Y Gao
- Department of Mechanical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands and Institute for Complex Molecular Systems (ICMS), Eindhoven, The Netherlands
| | - A M de Jong
- Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands and Institute for Complex Molecular Systems (ICMS), Eindhoven, The Netherlands
| | - M A Hulsen
- Department of Mechanical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands
| | - J M J den Toonder
- Department of Mechanical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands and Institute for Complex Molecular Systems (ICMS), Eindhoven, The Netherlands
| | - M W J Prins
- Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands and Institute for Complex Molecular Systems (ICMS), Eindhoven, The Netherlands and Philips Research, Eindhoven, The Netherlands
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36
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Culbertson CT, Mickleburgh TG, Stewart-James SA, Sellens KA, Pressnall M. Micro total analysis systems: fundamental advances and biological applications. Anal Chem 2014; 86:95-118. [PMID: 24274655 PMCID: PMC3951881 DOI: 10.1021/ac403688g] [Citation(s) in RCA: 106] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
| | - Tom G. Mickleburgh
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, USA
| | | | - Kathleen A. Sellens
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, USA
| | - Melissa Pressnall
- Department of Chemistry, Kansas State University, Manhattan, Kansas 66506, USA
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Treuel L, Eslahian KA, Docter D, Lang T, Zellner R, Nienhaus K, Nienhaus GU, Stauber RH, Maskos M. Physicochemical characterization of nanoparticles and their behavior in the biological environment. Phys Chem Chem Phys 2014; 16:15053-67. [DOI: 10.1039/c4cp00058g] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Whilst the physical and chemical properties of nanoparticles in the gas or idealized solvent phase can nowadays be characterized with sufficient accuracy, this is no longer the case for particles in the presence of a complex biological environment.
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Affiliation(s)
- L. Treuel
- Fraunhofer ICT-IMM
- 55129 Mainz, Germany
- Institute of Physical Chemistry
- University of Duisburg-Essen
- 45141 Essen, Germany
| | | | - D. Docter
- Molecular and Cellular Oncology/Mainz Screening Center (MSC)
- University Hospital of Mainz
- 55101 Mainz, Germany
| | - T. Lang
- Fraunhofer ICT-IMM
- 55129 Mainz, Germany
| | - R. Zellner
- Institute of Physical Chemistry
- University of Duisburg-Essen
- 45141 Essen, Germany
| | - K. Nienhaus
- Institute of Applied Physics
- Karlsruhe Institute of Technology (KIT)
- 76128 Karlsruhe, Germany
| | - G. U. Nienhaus
- Institute of Applied Physics
- Karlsruhe Institute of Technology (KIT)
- 76128 Karlsruhe, Germany
- Department of Physics
- University of Illinois at Urbana-Champaign
| | - R. H. Stauber
- Molecular and Cellular Oncology/Mainz Screening Center (MSC)
- University Hospital of Mainz
- 55101 Mainz, Germany
| | - M. Maskos
- Fraunhofer ICT-IMM
- 55129 Mainz, Germany
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Hartman MR, Ruiz RCH, Hamada S, Xu C, Yancey KG, Yu Y, Han W, Luo D. Point-of-care nucleic acid detection using nanotechnology. NANOSCALE 2013; 5:10141-54. [PMID: 24057263 DOI: 10.1039/c3nr04015a] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Recent developments in nanotechnology have led to significant advancements in point-of-care (POC) nucleic acid detection. The ability to sense DNA and RNA in a portable format leads to important applications for a range of settings, from on-site detection in the field to bedside diagnostics, in both developing and developed countries. We review recent innovations in three key process components for nucleic acid detection: sample preparation, target amplification, and read-out modalities. We discuss how the advancements realized by nanotechnology are making POC nucleic acid detection increasingly applicable for decentralized and accessible testing, in particular for the developing world.
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Affiliation(s)
- Mark R Hartman
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, New York, USA.
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Gottheil R, Baur N, Becker H, Link G, Maier D, Schneiderhan-Marra N, Stelzle M. Moving the solid phase: a platform technology for cartridge based sandwich immunoassays. Biomed Microdevices 2013; 16:163-72. [DOI: 10.1007/s10544-013-9816-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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40
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Electrokinetic removal of charged species from small sample volumes. J Chromatogr A 2013; 1299:131-5. [DOI: 10.1016/j.chroma.2013.05.055] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2013] [Revised: 05/22/2013] [Accepted: 05/23/2013] [Indexed: 11/17/2022]
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41
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Brandão D, Liébana S, Campoy S, Cortés P, Alegret S, Pividori MI. Electrochemical magneto-immunosensing ofSalmonellabased on nano and micro-sized magnetic particles. ACTA ACUST UNITED AC 2013. [DOI: 10.1088/1742-6596/421/1/012020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Wang J, Morabito K, Tang JX, Tripathi A. Microfluidic platform for isolating nucleic acid targets using sequence specific hybridization. BIOMICROFLUIDICS 2013; 7:44107. [PMID: 24404041 PMCID: PMC3745474 DOI: 10.1063/1.4816943] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Accepted: 07/16/2013] [Indexed: 05/06/2023]
Abstract
The separation of target nucleic acid sequences from biological samples has emerged as a significant process in today's diagnostics and detection strategies. In addition to the possible clinical applications, the fundamental understanding of target and sequence specific hybridization on surface modified magnetic beads is of high value. In this paper, we describe a novel microfluidic platform that utilizes a mobile magnetic field in static microfluidic channels, where single stranded DNA (ssDNA) molecules are isolated via nucleic acid hybridization. We first established efficient isolation of biotinylated capture probe (BP) using streptavidin-coated magnetic beads. Subsequently, we investigated the hybridization of target ssDNA with BP bound to beads and explained these hybridization kinetics using a dual-species kinetic model. The number of hybridized target ssDNA molecules was determined to be about 6.5 times less than that of BP on the bead surface, due to steric hindrance effects. The hybridization of target ssDNA with non-complementary BP bound to bead was also examined, and non-specific hybridization was found to be insignificant. Finally, we demonstrated highly efficient capture and isolation of target ssDNA in the presence of non-target ssDNA, where as low as 1% target ssDNA can be detected from mixture. The microfluidic method described in this paper is significantly relevant and is broadly applicable, especially towards point-of-care biological diagnostic platforms that require binding and separation of known target biomolecules, such as RNA, ssDNA, or protein.
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Affiliation(s)
- Jingjing Wang
- Center for Biomedical Engineering, School of Engineering and Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912, USA
| | - Kenneth Morabito
- Center for Biomedical Engineering, School of Engineering and Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912, USA
| | - Jay X Tang
- Department of Physics, Brown University, Providence, Rhode Island 02912, USA
| | - Anubhav Tripathi
- Center for Biomedical Engineering, School of Engineering and Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912, USA
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