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For: Nagatoishi S, Sugimoto N. Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein. Mol Biosyst 2013;8:2766-70. [PMID: 22851057 DOI: 10.1039/c2mb25234a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Number Cited by Other Article(s)
1
Tariq N, Kume T, Luo L, Cai Z, Dong S, Macgregor RB. Dimethyl sulfoxide (DMSO) as a stabilizing co-solvent for G-quadruplex DNA. Biophys Chem 2022;282:106741. [DOI: 10.1016/j.bpc.2021.106741] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 12/05/2021] [Accepted: 12/09/2021] [Indexed: 11/16/2022]
2
Novoseltseva AA, Ivanov NM, Novikov RA, Tkachev YV, Bunin DA, Gambaryan AS, Tashlitsky VN, Arutyunyan AM, Kopylov AM, Zavyalova EG. Structural and Functional Aspects of G-Quadruplex Aptamers Which Bind a Broad Range of Influenza A Viruses. Biomolecules 2020;10:biom10010119. [PMID: 31936820 PMCID: PMC7022617 DOI: 10.3390/biom10010119] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 01/05/2020] [Accepted: 01/07/2020] [Indexed: 02/07/2023]  Open
3
Putative Mechanisms Underlying High Inhibitory Activities of Bimodular DNA Aptamers to Thrombin. Biomolecules 2019;9:biom9020041. [PMID: 30682825 PMCID: PMC6406280 DOI: 10.3390/biom9020041] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 01/17/2019] [Accepted: 01/18/2019] [Indexed: 01/10/2023]  Open
4
Kumar N, Seminario JM. Molecular dynamics study of thrombin capture by aptamers TBA26 and TBA29 coupled to a DNA origami. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1448977] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
5
McRae EKS, Booy EP, Padilla-Meier GP, McKenna SA. On Characterizing the Interactions between Proteins and Guanine Quadruplex Structures of Nucleic Acids. J Nucleic Acids 2017;2017:9675348. [PMID: 29250441 PMCID: PMC5700478 DOI: 10.1155/2017/9675348] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Accepted: 10/08/2017] [Indexed: 01/07/2023]  Open
6
Sagi J. In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids? J Nucleic Acids 2017;2017:1641845. [PMID: 29181193 PMCID: PMC5664352 DOI: 10.1155/2017/1641845] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Accepted: 08/15/2017] [Indexed: 01/03/2023]  Open
7
Pica A, Russo Krauss I, Parente V, Tateishi-Karimata H, Nagatoishi S, Tsumoto K, Sugimoto N, Sica F. Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers. Nucleic Acids Res 2016;45:461-469. [PMID: 27899589 PMCID: PMC5224481 DOI: 10.1093/nar/gkw1113] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Revised: 10/20/2016] [Accepted: 10/29/2016] [Indexed: 11/23/2022]  Open
8
Esposito V, Russo A, Amato T, Varra M, Vellecco V, Bucci M, Russo G, Virgilio A, Galeone A. Backbone modified TBA analogues endowed with antiproliferative activity. Biochim Biophys Acta Gen Subj 2016;1861:1213-1221. [PMID: 27663232 DOI: 10.1016/j.bbagen.2016.09.019] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Revised: 09/13/2016] [Accepted: 09/16/2016] [Indexed: 10/21/2022]
9
Virgilio A, Petraccone L, Vellecco V, Bucci M, Varra M, Irace C, Santamaria R, Pepe A, Mayol L, Esposito V, Galeone A. Site-specific replacement of the thymine methyl group by fluorine in thrombin binding aptamer significantly improves structural stability and anticoagulant activity. Nucleic Acids Res 2015;43:10602-11. [PMID: 26582916 PMCID: PMC4678827 DOI: 10.1093/nar/gkv1224] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Accepted: 10/29/2015] [Indexed: 12/20/2022]  Open
10
Unusual Chair-Like G-Quadruplex Structures: Heterochiral TBA Analogues Containing Inversion of Polarity Sites. J CHEM-NY 2015. [DOI: 10.1155/2015/473051] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
11
Virgilio A, Petraccone L, Scuotto M, Vellecco V, Bucci M, Mayol L, Varra M, Esposito V, Galeone A. 5-Hydroxymethyl-2'-deoxyuridine residues in the thrombin binding aptamer: investigating anticoagulant activity by making a tiny chemical modification. Chembiochem 2014;15:2427-34. [PMID: 25214456 DOI: 10.1002/cbic.201402355] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Indexed: 11/07/2022]
12
Pica A, Russo Krauss I, Merlino A, Nagatoishi S, Sugimoto N, Sica F. Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer. FEBS J 2013;280:6581-8. [PMID: 24128303 DOI: 10.1111/febs.12561] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Revised: 09/30/2013] [Accepted: 10/03/2013] [Indexed: 11/29/2022]
13
Fujita H, Imaizumi Y, Kasahara Y, Kitadume S, Ozaki H, Kuwahara M, Sugimoto N. Structural and affinity analyses of g-quadruplex DNA aptamers for camptothecin derivatives. Pharmaceuticals (Basel) 2013;6:1082-93. [PMID: 24276420 PMCID: PMC3818834 DOI: 10.3390/ph6091082] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Revised: 08/11/2013] [Accepted: 08/26/2013] [Indexed: 01/13/2023]  Open
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