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Hagemeister M, Hamilton L, Wandrey N, Hill M, Mounce E, Mosel N, Lytle K, Redinger M, Boley J, Fancher N, Haynes A, Fill I, Cole PA, Hill E, Moxley MA, Thomas AA. Evaluation of Rhodanine Indolinones as AANAT Inhibitors. ChemMedChem 2024; 19:e202300567. [PMID: 37984928 PMCID: PMC10843758 DOI: 10.1002/cmdc.202300567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/18/2023] [Accepted: 11/19/2023] [Indexed: 11/22/2023]
Abstract
Circadian rhythm (CR) dysregulation negatively impacts health and contributes to mental disorders. The role of melatonin, a hormone intricately linked to CR, is still a subject of active study. The enzyme arylalkylamine N-acetyltransferase (AANAT) is responsible for melatonin synthesis, and it is a potential target for disorders that involve abnormally high melatonin levels, such as seasonal affective disorder (SAD). Current AANAT inhibitors suffer from poor cell permeability, selectivity, and/or potency. To address the latter, we have employed an X-ray crystal-based model to guide the modification of a previously described AANAT inhibitor, containing a rhodanine-indolinone core. We made various structural modifications to the core structure, including testing the importance of a carboxylic acid group thought to bind in the CoA site, and we evaluated these changes using MD simulations in conjunction with enzymatic assay data. Additionally, we tested three AANAT inhibitors in a zebrafish locomotion model to determine their effects in vivo. Key discoveries were that potency could be modestly improved by replacing a 5-carbon alkyl chain with rings and that the central rhodanine ring could be replaced by other heterocycles and maintain potency.
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Affiliation(s)
- Mackenzie Hagemeister
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Luke Hamilton
- Department of Biology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Nicole Wandrey
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Mackinzi Hill
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Emery Mounce
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Noah Mosel
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Katie Lytle
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Makenna Redinger
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Jake Boley
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Nathan Fancher
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Alexis Haynes
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Ianna Fill
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Philip A Cole
- Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Evan Hill
- Department of Psychology, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Michael A Moxley
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
| | - Allen A Thomas
- Department of Chemistry, University of Nebraska at Kearney, Kearney, NE, 69949, USA
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Ramakrishnan J, Magudeeswaran S, Suresh S, Poomani K. Investigation of intermolecular interactions and binding mechanism of PU139 and PU141 molecules with p300 HAT enzyme via molecular docking, molecular dynamics simulations and binding free energy analysis. J Biomol Struct Dyn 2023; 41:1351-1365. [PMID: 34974819 DOI: 10.1080/07391102.2021.2020164] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The p300 histone acetyltransferase (HAT) enzyme acetylates the lysine residue of histone promotes the transcription reaction. The abnormal function of p300 HAT enzyme causes various diseases such as Cancer, Asthma, Alzheimer, Diabetics, and AIDS. In the recent years, several studies have been conducted to design potential drug to inhibit this enzyme. Recently, an in vitro study has been performed on the synthetic molecules PU139 and PU141 to inhibit the p300 HAT enzyme. The present study aims to understand the binding affinity, intermolecular interactions, conformational stability and binding energy of PU139 and PU141 molecules in the active site of p300 HAT enzyme from the in silico studies. The molecular docking and molecular dynamics (MD) simulations were carried out for both ligands with the p300 HAT enzyme. The molecular docking and MD simulations reveals that both molecules forms expected interactions with the catalytic site key residues of p300 enzyme. The MD simulation shows the maximum RMSD value for the PU141 is 2.3 Å, whereas for PU139 is 3.3 Å; these low RMSD values indicate that both molecules are highly stable in the active site of p300. The calculated binding free energy of PU141 (-20.62 kcal/mol) is higher than the molecule PU139 (-17.67 kcal/mol). Among the results, PU141 shows the high binding affinity with p300 while comparing with PU139. The results of this in-silico study coupled with the findings reported in the in vitro study confirm that PU141 may be suitable for clinical study.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Jaganathan Ramakrishnan
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
| | - Sivanandam Magudeeswaran
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
| | - Suganya Suresh
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
| | - Kumaradhas Poomani
- Laboratory of Biocrystallography and Computational Molecular Biology, Department of Physics, Periyar University, Salem, India
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Moghaddam FM, Aghamiri B, Jalalinik M. A facile one-pot, four-component synthesis of (Z)-isomer of rhodanine-oxindole derivatives under environmentally benevolent conditions. SYNTHETIC COMMUN 2021. [DOI: 10.1080/00397911.2021.2008445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- F. Matloubi Moghaddam
- Laboratory of Organic Synthesis and Natural Products, Department of Chemistry, Sharif University of Technology, Tehran, Iran
| | - Bagher Aghamiri
- Laboratory of Organic Synthesis and Natural Products, Department of Chemistry, Sharif University of Technology, Tehran, Iran
| | - Mahbod Jalalinik
- Laboratory of Organic Synthesis and Natural Products, Department of Chemistry, Sharif University of Technology, Tehran, Iran
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Garcia AM, Ruiz-Carretero A. Chirality inversion in hydrogen-bonded rhodanine-oligothiophene derivatives by solvent and temperature. Chem Commun (Camb) 2021; 58:529-532. [PMID: 34908045 DOI: 10.1039/d1cc05945a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The self-assembly process of hydrogen-bonded quinquethiophene-rhodanine derivatives has been explored as a function of solvent and temperature. We demonstrate the divergent supramolecular chirality emerging from a single enantiomer by subtle changes in solvent mixtures and sample preparation protocol. Spectroscopic techniques have proved the presence of aggregates where H-bonding interactions play a crucial role.
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Affiliation(s)
- Ana M Garcia
- University of Strasbourg, CNRS, Institut Charles Sadron, 23 Rue de Loess, BP 84047, Strasbourg 67034, Cedex 2, France.
| | - Amparo Ruiz-Carretero
- University of Strasbourg, CNRS, Institut Charles Sadron, 23 Rue de Loess, BP 84047, Strasbourg 67034, Cedex 2, France.
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5
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Bensafi T, Hadji D, Yahiaoui A, Argoub K, Hachemaoui A, Kenane A, Baroudi B, Toubal K, Djafri A, Benkouider AM. Synthesis, characterization and DFT calculations of linear and NLO properties of novel (Z)-5-benzylidene-3-N(4-methylphenyl)-2-thioxothiazolidin-4-one. J Sulphur Chem 2021. [DOI: 10.1080/17415993.2021.1951729] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- T. Bensafi
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - D. Hadji
- Modelling and Calculation Methods Laboratory, University of Saida – Dr. Moulay Tahar, Saïda, Algeria
| | - A. Yahiaoui
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - K. Argoub
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - A. Hachemaoui
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - A. Kenane
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - B. Baroudi
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
| | - K. Toubal
- Laboratory of Applied Organic Synthesis, Department of Chemistry, Faculty of Sciences, University of Oran 1 Ahmed Ben Bella, Oran, Algeria
| | - A. Djafri
- Laboratory of Applied Organic Synthesis, Department of Chemistry, Faculty of Sciences, University of Oran 1 Ahmed Ben Bella, Oran, Algeria
| | - A. M. Benkouider
- Laboratory of Organic Chemistry Macromolecular and Materials, Faculty of Exact Sciences, University of Mascara, Mascara, Algeria
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Maddila S, Gorle S, Jonnalagadda SB. Drug screening of rhodanine derivatives for antibacterial activity. Expert Opin Drug Discov 2019; 15:203-229. [PMID: 31777321 DOI: 10.1080/17460441.2020.1696768] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Introduction: Bacteriological infections are a major risk to human health. These include all hospital and public-acquired infections. In drug discovery, rhodanines are privileged heterocyclic frameworks. Their derivatives possess strong anti-bacterial activity and some of them have shown potent activity against multidrug-resistant pathogens, both under in vitro and in vivo conditions. To treat multi-drug resistant pathogens, the development of novel potent drugs, with superior anti-bacterial efficacy, is paramount. One avenue which shows promise is the design and development of novel rhodanines.Areas covered: This review summarizes the status on rhodanine-based derivatives and their anti-bacterial activity, based on published research over the past six years. Furthermore, to facilitate the design of novel derivatives with improved functions, their structure-activity relationships are assessed with reference to their efficacy as anti-bacterial agents and their toxicity.Expert opinion: The pharmacological activity of molecules bearing a rhodanine scaffold needs to be very critically assessed in spite of considerable information available from various biological evaluations. Although, some data on structure-activity relationship frameworks is available, information is not adequate to optimize the efficacy of rhodanine derivatives for different applications.
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Affiliation(s)
- Suresh Maddila
- School of Chemistry & Physics, University of KwaZulu-Natal, Westville Campus, Durban, South Africa.,Department of Chemistry, GITAM Institute of Sciences, GITAM University, Visakhapatnam, India
| | - Sridevi Gorle
- Department of Microbiology and Food Science & Technology, GITAM Institute of Sciences, GITAM University, Visakhapatnam, India
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Synthesis and Cytotoxic Activity against K562 and MCF7 Cell Lines of Some N-(5-Arylidene-4-oxo-2-thioxothiazolidin-3-yl)-2-((4-oxo-3-phenyl-3,4-dihydroquinazoline-2-yl)thio)acetamide Compounds. J CHEM-NY 2019. [DOI: 10.1155/2019/1492316] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Ethyl 2-((4-oxo-3-phenyl-3,4-dihydroquinazolin-2-yl)thio)acetate (3) which was synthesized starting from anthranilic acid (1) via 2-thioxo-3-phenylquinazolin-4(3H)-one (2) reacted with hydrazine hydrate to afford 2-((4-oxo-3-phenyl-3,4-dihydroquinazolin-2-yl)thio)acetohydrazide (4). Reaction of (4) with thiocarbonyl-bis-thioglycolic acid gave a new compound nameN-(4-oxo-2-thioxothiazolidin-3-yl)-2-((4-oxo-3-phenyl-3,4-dihydroquinazolin-2-yl)thio)acetamide (5). Knoevenagel condensation of (5) with appropriate aldehydes gave fourteen (Z)-N-(5-arylidene-4-oxo-2-thioxothiazolidin-3-yl)-2-((4-oxo-3-phenyl-3,4-dihydroquinazolin-2-yl)thio)acetamide compounds (6a–o) with moderate yield. The chemical structure of the compounds was elucidated on the basis of IR,1H-NMR,13C-NMR, and HR-MS spectral data. The 5-arylidene-2-thioxothiazolidinone compounds exhibited mild-to-moderate cytotoxic activity against both K562 (chronic myelogenous leukemia) cells and MCF7 (breast cancer) cells.
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Khaldoun K, Safer A, Boukabcha N, Dege N, Ruchaud S, Souab M, Bach S, Chouaih A, Saidi-Besbes S. Synthesis and evaluation of new isatin-aminorhodanine hybrids as PIM1 and CLK1 kinase inhibitors. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.04.122] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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9
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5-[(Z)-5-Chloro-2-oxoindolin-3-ylidene]-3-{(E)-[(4-hydroxyphenyl)imino]methyl}-2-thioxothiazolidin-4-one. MOLBANK 2019. [DOI: 10.3390/m1059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
N-aminorhodanine as well as isatin are highly solicited motifs known for their wide potential for biological activity. The objective of this work was to synthesize hybrid molecules as kinase inhibitors from these two motifs. In order to study the reactivity of the two active centers in aminorhodanine (N-amino group and the 5-methylene group) toward two carbonyl groups (aromatic aldehyde and ketone of isatin), we decided to carry out a one-pot multi-component reaction by simultaneously introducing aminorhodanine, isatin, and an aromatic aldehyde in ethanol in the presence of AcOEt. Under these conditions, this reaction led to a single adduct. The reaction product structure was confirmed by 1H, 13C-NMR, X-ray single crystal analysis, and high-resolution mass HRMS analysis. As a result, the method used has been very effective and totally stereo- and regioselective.
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Krishna S, Kumar S, Singh DK, Lakra AD, Banerjee D, Siddiqi MI. Multiple Machine Learning Based-Chemoinformatics Models for Identification of Histone Acetyl Transferase Inhibitors. Mol Inform 2018; 37:e1700150. [DOI: 10.1002/minf.201700150] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2017] [Accepted: 04/06/2018] [Indexed: 01/25/2023]
Affiliation(s)
- Shagun Krishna
- Molecular & Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
| | - Sushil Kumar
- Molecular & Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
| | - Deependra Kumar Singh
- Molecular & Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
| | - Amar Deep Lakra
- Endocrinology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
| | - Dibyendu Banerjee
- Molecular & Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
| | - Mohammad Imran Siddiqi
- Molecular & Structural Biology Division; CSIR-Central Drug Research Institute; Lucknow India 260031
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Kaminskyy D, Kryshchyshyn A, Lesyk R. 5-Ene-4-thiazolidinones - An efficient tool in medicinal chemistry. Eur J Med Chem 2017; 140:542-594. [PMID: 28987611 PMCID: PMC7111298 DOI: 10.1016/j.ejmech.2017.09.031] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2017] [Revised: 07/14/2017] [Accepted: 09/17/2017] [Indexed: 02/02/2023]
Abstract
The presented review is an attempt to summarize a huge volume of data on 5-ene-4-thiazolidinones being a widely studied class of small molecules used in modern organic and medicinal chemistry. The manuscript covers approaches to the synthesis of 5-ene-4-thiazolidinone derivatives: modification of the C5 position of the basic core; synthesis of the target compounds in the one-pot or multistage reactions or transformation of other related heterocycles. The most prominent pharmacological profiles of 5-ene derivatives of different 4-thiazolidinone subtypes belonging to hit-, lead-compounds, drug-candidates and drugs as well as the most studied targets have been discussed. Currently target compounds (especially 5-en-rhodanines) are assigned as frequent hitters or pan-assay interference compounds (PAINS) within high-throughput screening campaigns. Nevertheless, the crucial impact of the presence/nature of C5 substituent (namely 5-ene) on the pharmacological effects of 5-ene-4-thiazolidinones was confirmed by the numerous listed findings from the original articles. The main directions for active 5-ene-4-thiazolidinones optimization have been shown: i) complication of the fragment in the C5 position; ii) introduction of the substituents in the N3 position (especially fragments with carboxylic group or its derivatives); iii) annealing in complex heterocyclic systems; iv) combination with other pharmacologically attractive fragments within hybrid pharmacophore approach. Moreover, the utilization of 5-ene-4-thiazolidinones in the synthesis of complex compounds with potent pharmacological application is described. The chemical transformations cover mainly the reactions which involve the exocyclic double bond in C5 position of the main core and correspond to the abovementioned direction of the 5-ene-4-thiazolidinone modification.
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Affiliation(s)
- Danylo Kaminskyy
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, Pekarska 69, Lviv-10, 79010, Ukraine
| | - Anna Kryshchyshyn
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, Pekarska 69, Lviv-10, 79010, Ukraine
| | - Roman Lesyk
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, Pekarska 69, Lviv-10, 79010, Ukraine.
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Kaminskyy D, Kryshchyshyn A, Lesyk R. Recent developments with rhodanine as a scaffold for drug discovery. Expert Opin Drug Discov 2017; 12:1233-1252. [PMID: 29019278 DOI: 10.1080/17460441.2017.1388370] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
INTRODUCTION Rhodanines, as one of the 4-thiazolidinones subtypes, are recognized as privileged heterocycles in medicinal chemistry. The main achievements include the development of drug-like molecules with numerous biological activities as well as approved drugs. Among rhodanines, 5-ene-rhodanines are of special interest, and are often claimed as pan assay interference compounds due to Michael acceptor functionality. Areas covered: Herein, the synthetic protocols for rhodanines and their transformation are reviewed. Biological activity is briefly discussed as well as biotargets, mode of actions and optimization directions. Furthermore, the utilization of 5-ene-rhodanines in Michael additions are discussed while both pro and contra arguments have been outlined within medicinal chemistry application. Expert opinion: Rhodanines remain privileged heterocycles in drug discovery. They are accessible building blocks for optimization and transformation into related heterocycles, simplified analogues and fused heterocycles with a thiazolidine framework. Michael acceptor functionality, as well as the thesis about low selectivity towards biotargets of rhodanines, must be confirmed experimentally and it cannot be based on just the presence of conjugated α,β-unsaturated carbonyl. Moreover, the positive aspects of Michael acceptors must be considered as well as their multitarget properties. New criteria for target affinity must be found. In conclusion, rhodanines are generally not problematic per se.
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Affiliation(s)
- Danylo Kaminskyy
- a Department of Pharmaceutical, Organic and Bioorganic Chemistry , Danylo Halytsky Lviv National Medical University , Lviv-10 , Ukraine
| | - Anna Kryshchyshyn
- a Department of Pharmaceutical, Organic and Bioorganic Chemistry , Danylo Halytsky Lviv National Medical University , Lviv-10 , Ukraine
| | - Roman Lesyk
- a Department of Pharmaceutical, Organic and Bioorganic Chemistry , Danylo Halytsky Lviv National Medical University , Lviv-10 , Ukraine
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Chowhan LR, Reddy MS, Kumar NS. An efficient and rapid synthesis of 3-hydroxy-3-alkyl-2-oxindoles via Zn-mediated barbier-type reaction under aqueous conditions. J CHEM SCI 2017. [DOI: 10.1007/s12039-017-1329-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Andleeb H, Khan I, Bauzá A, Tahir MN, Simpson J, Hameed S, Frontera A. Synthesis and supramolecular self-assembly of thioxothiazolidinone derivatives driven by H-bonding and diverse π–hole interactions: A combined experimental and theoretical analysis. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.03.046] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Subhedar DD, Shaikh MH, Shingate BB, Nawale L, Sarkar D, Khedkar VM, Kalam Khan FA, Sangshetti JN. Quinolidene-rhodanine conjugates: Facile synthesis and biological evaluation. Eur J Med Chem 2017; 125:385-399. [DOI: 10.1016/j.ejmech.2016.09.059] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Revised: 09/17/2016] [Accepted: 09/19/2016] [Indexed: 01/27/2023]
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Subhedar DD, Shaikh MH, Nawale L, Yeware A, Sarkar D, Khan FAK, Sangshetti JN, Shingate BB. Novel tetrazoloquinoline-rhodanine conjugates: Highly efficient synthesis and biological evaluation. Bioorg Med Chem Lett 2016; 26:2278-83. [PMID: 27013391 DOI: 10.1016/j.bmcl.2016.03.045] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 02/22/2016] [Accepted: 03/14/2016] [Indexed: 11/30/2022]
Abstract
In search of new active molecules against Mycobacterium tuberculosis (MTB) H37Ra and Mycobacterium bovis BCG, a small focused library of rhodanine incorporated tetrazoloquinoline has been efficiently synthesized by using [HDBU][HSO4] acidic ionic liquid. The compound 3c found to be promising inhibitor of MTB H37Ra and M. bovis BCG characterized by lower MIC values 4.5 and 2.0 μg/mL, respectively. The active compounds were further tested for cytotoxicity against HeLa, THP-1, A549 and PANC-1 cell lines using MTT assay and showed no significant cytotoxic activity at the maximum concentration evaluated. Again, the synthesized compounds were found to have potential antifungal activity. Furthermore, to rationalize the observed biological activity data, the molecular docking study also been carried out against a potential target Zmp1 enzyme of MTB H37Ra, which revealed a significant correlation between the binding score and biological activity for these compounds. The results of in vitro and in silico study suggest that these compounds possess ideal structural requirement for the further development of novel therapeutic agents.
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Affiliation(s)
- Dnyaneshwar D Subhedar
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431 004, India
| | - Mubarak H Shaikh
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431 004, India
| | - Laxman Nawale
- Combichem Bioresource Center, Organic Chemistry Division, CSIR-National Chemical Laboratory, Pune 411 008, India
| | - Amar Yeware
- Combichem Bioresource Center, Organic Chemistry Division, CSIR-National Chemical Laboratory, Pune 411 008, India
| | - Dhiman Sarkar
- Combichem Bioresource Center, Organic Chemistry Division, CSIR-National Chemical Laboratory, Pune 411 008, India
| | - Firoz A Kalam Khan
- Department of Pharmaceutical Chemistry, Y. B. Chavan College of Pharmacy, Rafiq Zakaria Campus, Aurangabad 431 001, India
| | - Jaiprakash N Sangshetti
- Department of Pharmaceutical Chemistry, Y. B. Chavan College of Pharmacy, Rafiq Zakaria Campus, Aurangabad 431 001, India
| | - Bapurao B Shingate
- Department of Chemistry, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad 431 004, India.
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Subhedar DD, Shaikh MH, Nawale L, Yeware A, Sarkar D, Shingate BB. [Et3NH][HSO4] catalyzed efficient synthesis of 5-arylidene-rhodanine conjugates and their antitubercular activity. RESEARCH ON CHEMICAL INTERMEDIATES 2016. [DOI: 10.1007/s11164-016-2484-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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18
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Havrylyuk D, Roman O, Lesyk R. Synthetic approaches, structure activity relationship and biological applications for pharmacologically attractive pyrazole/pyrazoline-thiazolidine-based hybrids. Eur J Med Chem 2016; 113:145-66. [PMID: 26922234 PMCID: PMC7115613 DOI: 10.1016/j.ejmech.2016.02.030] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2015] [Revised: 02/10/2016] [Accepted: 02/11/2016] [Indexed: 11/28/2022]
Abstract
The features of the chemistry of 4-thiazolidinone and pyrazole/pyrazolines as pharmacologically attractive scaffolds were described in a number of reviews in which the main approaches to the synthesis of mentioned heterocycles and their biological activity were analyzed. However, the pyrazole/pyrazoline–thiazolidine-based hybrids as biologically active compounds is poorly discussed in the context of pharmacophore hybrid approach. Therefore, the purpose of this review is to summarize the data about the synthesis and modification of heterocyclic systems with thiazolidine and pyrazoline or pyrazole fragments in molecules as promising objects of modern bioorganic and medicinal chemistry. The description of biological activity was focused on SAR analysis and mechanistic insights of mentioned hybrids. Synthesis and chemistry of pyrazole/pyrazoline–thiazolidine-based hybrids. A diverse spectrum of pyrazole/pyrazoline–thiazolidine-based hybrids biological activities has been presented. Structure activity relationship of pyrazole/pyrazoline–thiazolidine-based hybrids for different activities has been discussed.
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Affiliation(s)
- Dmytro Havrylyuk
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, 69 Pekarska Street, Lviv, 79010, Ukraine; Department of Chemistry, University of Kentucky, 505 Rose Street, Lexington, KY 40506, United States
| | - Olexandra Roman
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, 69 Pekarska Street, Lviv, 79010, Ukraine
| | - Roman Lesyk
- Department of Pharmaceutical, Organic and Bioorganic Chemistry, Danylo Halytsky Lviv National Medical University, 69 Pekarska Street, Lviv, 79010, Ukraine.
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19
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A new method for the preparation of 5-acylidene and 5-imino substituted rhodanine derivatives and their antioxidant and antimicrobial activities. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.04.069] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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20
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Gajer JM, Furdas SD, Gründer A, Gothwal M, Heinicke U, Keller K, Colland F, Fulda S, Pahl HL, Fichtner I, Sippl W, Jung M. Histone acetyltransferase inhibitors block neuroblastoma cell growth in vivo. Oncogenesis 2015; 4:e137. [PMID: 25664930 PMCID: PMC4338425 DOI: 10.1038/oncsis.2014.51] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 12/09/2014] [Indexed: 12/25/2022] Open
Abstract
We have previously described novel histone acetyltransferase (HAT) inhibitors that block neuroblastoma cell growth in vitro. Here we show that two selected pyridoisothiazolone HAT inhibitors, PU139 and PU141, induce cellular histone hypoacetylation and inhibit growth of several neoplastic cell lines originating from different tissues. Broader in vitro selectivity profiling shows that PU139 blocks the HATs Gcn5, p300/CBP-associated factor (PCAF), CREB (cAMP response element-binding) protein (CBP) and p300, whereas PU141 is selective toward CBP and p300. The pan-inhibitor PU139 triggers caspase-independent cell death in cell culture. Both inhibitors block growth of SK-N-SH neuroblastoma xenografts in mice and the PU139 was shown to synergize with doxorubicin in vivo. The latter also reduces histone lysine acetylation in vivo at concentrations that block neoplastic xenograft growth. This is one of the very few reports on hypoacetylating agents with in vivo anticancer activity.
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Affiliation(s)
- J M Gajer
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
| | - S D Furdas
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
- Freiburg Institute of Advanced Studies (FRIAS), University of Freiburg, Freiburg, Germany
| | - A Gründer
- Section of Molecular Hematology, Department of Hematology/Oncology, University Hospital Freiburg, Freiburg, Germany
| | - M Gothwal
- Section of Molecular Hematology, Department of Hematology/Oncology, University Hospital Freiburg, Freiburg, Germany
| | - U Heinicke
- Institute for Experimental Cancer Research in Pediatrics, Goethe-University, Frankfurt, Germany
| | - K Keller
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
| | - F Colland
- Hybrigenics, 3-5 impasse Reille, Paris, France
| | - S Fulda
- Institute for Experimental Cancer Research in Pediatrics, Goethe-University, Frankfurt, Germany
- German Cancer Consortium (DKTK), Frankfurt, Germany
- German Cancer Research Centre (DKFZ), Heidelberg, Germany
| | - H L Pahl
- Section of Molecular Hematology, Department of Hematology/Oncology, University Hospital Freiburg, Freiburg, Germany
| | - I Fichtner
- Experimental Pharmacology and Oncology Berlin-Buch GmbH, Berlin-Buch, Germany
| | - W Sippl
- Freiburg Institute of Advanced Studies (FRIAS), University of Freiburg, Freiburg, Germany
- Department of Pharmaceutical Chemistry, Martin-Luther-University of Halle-Wittenberg, Halle (Saale), Germany
| | - M Jung
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
- German Cancer Consortium (DKTK), Frankfurt, Germany
- German Cancer Consortium (DKTK), Freiburg, Germany
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21
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Rhodanine hydrolysis leads to potent thioenolate mediated metallo-β-lactamase inhibition. Nat Chem 2014; 6:1084-90. [DOI: 10.1038/nchem.2110] [Citation(s) in RCA: 95] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Accepted: 10/08/2014] [Indexed: 12/29/2022]
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22
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Jeankumar VU, Alokam R, Sridevi JP, Suryadevara P, Matikonda SS, Peddi S, Sahithi S, Alvala M, Yogeeswari P, Sriram D. Discovery and Structure Optimization of a Series of Isatin Derivatives asMycobacterium tuberculosisChorismate Mutase Inhibitors. Chem Biol Drug Des 2014; 83:498-506. [DOI: 10.1111/cbdd.12265] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2013] [Revised: 10/25/2013] [Accepted: 11/04/2013] [Indexed: 12/20/2022]
Affiliation(s)
- Variam U. Jeankumar
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Reshma Alokam
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Jonnalagadda P. Sridevi
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Priyanka Suryadevara
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Siddharth S. Matikonda
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Santosh Peddi
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Seedarala Sahithi
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Mallika Alvala
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Perumal Yogeeswari
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
| | - Dharmarajan Sriram
- Department of Pharmacy; Birla Institute of Technology & Science-Pilani; Hyderabad Campus; Shameerpet, R.R. District Hyderabad Andhra Pradesh 500078 India
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23
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Furdas SD, Hoffmann I, Robaa D, Herquel B, Malinka W, Świątek P, Akhtar A, Sippl W, Jung M. Pyrido- and benzisothiazolones as inhibitors of histone acetyltransferases (HATs). MEDCHEMCOMM 2014. [DOI: 10.1039/c4md00245h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present structure–activity studies on pyrido- and benzisothiazolones as histone acetyltransferase (HAT) inhibitors. Distinct subtype-selectivity profiles were obtained in vitro that correlate with cytotoxicity profiles on cancer cells.
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Affiliation(s)
- S. D. Furdas
- Institute of Pharmaceutical Sciences
- Albert-Ludwigs-Universität Freiburg
- 79104 Freiburg
- Germany
| | - I. Hoffmann
- Institute of Pharmaceutical Sciences
- Albert-Ludwigs-Universität Freiburg
- 79104 Freiburg
- Germany
| | - D. Robaa
- Institute of Pharmacy
- Martin-Luther-Universität Halle-Wittenberg
- 06120 Halle/Saale
- Germany
| | - B. Herquel
- Max Planck Institute of Immunobiology and Epigenetics
- 79108 Freiburg
- Germany
| | - W. Malinka
- Department of Chemistry of Drugs
- Wroclaw Medical University
- 50-556 Wrocław
- Poland
| | - P. Świątek
- Department of Chemistry of Drugs
- Wroclaw Medical University
- 50-556 Wrocław
- Poland
| | - A. Akhtar
- Max Planck Institute of Immunobiology and Epigenetics
- 79108 Freiburg
- Germany
| | - W. Sippl
- Institute of Pharmacy
- Martin-Luther-Universität Halle-Wittenberg
- 06120 Halle/Saale
- Germany
| | - M. Jung
- Institute of Pharmaceutical Sciences
- Albert-Ludwigs-Universität Freiburg
- 79104 Freiburg
- Germany
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24
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Nasiri F, Zolali A, Azimian Z. A novel one-pot solvent-free synthesis of 3-alkyl-2-thioxo-1,3-thiazolidine-4-ones. J Sulphur Chem 2013. [DOI: 10.1080/17415993.2013.789518] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Farough Nasiri
- Department of Applied Chemistry, University of Mohaghegh Ardabili, PO Box 56199-11367, Ardabil, Iran
| | - Amin Zolali
- Department of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran
| | - Zeinab Azimian
- Department of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran
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