1
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Fansher D, Besna JN, Fendri A, Pelletier JN. Choose Your Own Adventure: A Comprehensive Database of Reactions Catalyzed by Cytochrome P450 BM3 Variants. ACS Catal 2024; 14:5560-5592. [PMID: 38660610 PMCID: PMC11036407 DOI: 10.1021/acscatal.4c00086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 03/11/2024] [Accepted: 03/12/2024] [Indexed: 04/26/2024]
Abstract
Cytochrome P450 BM3 monooxygenase is the topic of extensive research as many researchers have evolved this enzyme to generate a variety of products. However, the abundance of information on increasingly diversified variants of P450 BM3 that catalyze a broad array of chemistry is not in a format that enables easy extraction and interpretation. We present a database that categorizes variants by their catalyzed reactions and includes details about substrates to provide reaction context. This database of >1500 P450 BM3 variants is downloadable and machine-readable and includes instructions to maximize ease of gathering information. The database allows rapid identification of commonly reported substitutions, aiding researchers who are unfamiliar with the enzyme in identifying starting points for enzyme engineering. For those actively engaged in engineering P450 BM3, the database, along with this review, provides a powerful and user-friendly platform to understand, predict, and identify the attributes of P450 BM3 variants, encouraging the further engineering of this enzyme.
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Affiliation(s)
- Douglas
J. Fansher
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
| | - Jonathan N. Besna
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
- Department
of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, QC, Canada H3T 1J4
| | - Ali Fendri
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
| | - Joelle N. Pelletier
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
- Department
of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, QC, Canada H3T 1J4
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2
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Peng T, Tian J, Zhao Y, Jiang X, Cheng X, Deng G, Zhang Q, Wang Z, Yang J, Chen Y. Multienzyme Redox System with Cofactor Regeneration for Cyclic Deracemization of Sulfoxides. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202209272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Tao Peng
- Zunyi Medical University Department of Biochemistry CHINA
| | - Jin Tian
- Zunyi Medical University Department of Biochemistry CHINA
| | - Yuyan Zhao
- Zunyi Medical University Department of Biochemistry CHINA
| | - Xu Jiang
- Zunyi Medical University Department of Biochemistry CHINA
| | - Xiaoling Cheng
- Zunyi Medical University Department of Biochemistry CHINA
| | - Guozhong Deng
- Zunyi Medical University Key Laboratory of Biocatalysis & Chiral Drug Synthesis of Guizhou Province CHINA
| | - Quan Zhang
- Zunyi Medical University Department of Biochemistry CHINA
| | - Zhongqiang Wang
- Zunyi Medical University Key Laboratory of Biocatalysis & Chiral Drug Synthesis of Guizhou Province CHINA
| | - Jiawei Yang
- Zunyi Medical University Department of Biochemistry CHINA
| | - Yongzheng Chen
- Zunyi Medical University School of Pharmacy 6#, Xuefu West Road,Zunyi, Guizhou,P.R. China 563000 Zunyi CHINA
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3
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Peng T, Tian J, Zhao Y, Jiang X, Cheng X, Deng G, Zhang Q, Wang Z, Yang J, Chen Y. Multienzyme Redox System with Cofactor Regeneration for Cyclic Deracemization of Sulfoxides. Angew Chem Int Ed Engl 2022; 61:e202209272. [PMID: 35831972 DOI: 10.1002/anie.202209272] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Indexed: 11/07/2022]
Abstract
Optically pure sulfoxides are noteworthy compounds applied in a wide range of industrial fields; however, the biocatalytic deracemization of racemic sulfoxides is challenging. Herein, a high-enantioselective methionine sulfoxide reductase A (MsrA) was combined with a low-enantioselective styrene monooxygenase (SMO) for the cyclic deracemization of sulfoxides. Enantiopure sulfoxides were obtained in >90% yield and with >90% enantiomeric excess ( ee ) through dynamic "selective reduction and non-selective oxidation" cycles. The cofactors of MsrA and SMO were subsequently regenerated by the cascade catalysis of three auxiliary enzymes through the consumption of low-cost D-glucose. Moreover, this "one-pot, one-step" cyclic deracemization strategy exhibited a wide substrate scope toward various aromatic, heteroaromatic, alkyl and thio-alkyl sulfoxides. This system proposed an efficient strategy for the green synthesis of chiral sulfoxide .
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Affiliation(s)
- Tao Peng
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Jin Tian
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Yuyan Zhao
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Xu Jiang
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Xiaoling Cheng
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Guozhong Deng
- Zunyi Medical University, Key Laboratory of Biocatalysis & Chiral Drug Synthesis of Guizhou Province, CHINA
| | - Quan Zhang
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Zhongqiang Wang
- Zunyi Medical University, Key Laboratory of Biocatalysis & Chiral Drug Synthesis of Guizhou Province, CHINA
| | - Jiawei Yang
- Zunyi Medical University, Department of Biochemistry, CHINA
| | - Yongzheng Chen
- Zunyi Medical University, School of Pharmacy, 6#, Xuefu West Road,Zunyi, Guizhou,P.R. China, 563000, Zunyi, CHINA
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4
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Hagiwara H. Introduction of Chiral Centers to α- and/or β-Positions of Carbonyl Groups by Biocatalytic Asymmetric Reduction of α,β-Unsaturated Carbonyl Compounds. Nat Prod Commun 2022. [DOI: 10.1177/1934578x221099054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Biocatalytic asymmetric reductions of acyclic and cyclic α,β-unsaturated carbonyl compounds are favorable protocols for introduction of chiral centers to α- and/or β-positions of the carbonyl groups. Representative biocatalytic reductions of electron deficient olefins are compiled from a synthetic point of view according to compound types from the papers in 2012 to early 2022. Applications to syntheses of some enantiomericaly enriched perfumery ingredients are presented to show the feasibility of the biocatalytic reductions.
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Affiliation(s)
- Hisahiro Hagiwara
- Graduate School of Science and Technology, Niigata University, 8050, 2-Nocho, Ikarashi, Nishi-ku, Niigata, 950-2181, Japan
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5
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Shou C, Zheng YC, Zhan JR, Li CX, Xu JH. Removing the Obstacle to (-)-Menthol Biosynthesis by Building a Microbial Cell Factory of (+)-cis-Isopulegone from (-)-Limonene. CHEMSUSCHEM 2022; 15:e202101741. [PMID: 34519416 DOI: 10.1002/cssc.202101741] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 09/13/2021] [Indexed: 06/13/2023]
Abstract
Microbial synthesis of plant-based (-)-menthol is of great interest because of its high demand (≈30 kiloton per year) as well as unique odor and cooling characteristics. However, this remains a great challenge due to the yet unfilled gap between (-)-limonene and (+)-cis-isopulegone. Herein, the first artificial and effective system was developed for (+)-cis-isopulegone biosynthesis from (-)-limonene by recruiting two bacterial enzymes to replace their inefficient counterparts from Mentha piperita, limonene-3-hydroxylase, and isopiperitenol dehydrogenase. A cofactor self-regenerative recombinant Escherichia coli strain was constructed by introducing a formate dehydrogenase for nicotinamide adenine dinucleotide phosphate (NADPH) regeneration and an engineered microbial isopiperitenol dehydrogenase. The production of (+)-cis-isopulegone (up to 281.2 mg L-1 ) was improved by 36 times compared with that of the initial strain. This work lays a reliable foundation for the microbial synthesis of (-)-menthol.
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Affiliation(s)
- Chao Shou
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P.R. China
| | - Yu-Cong Zheng
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P.R. China
| | - Jing-Ru Zhan
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P.R. China
| | - Chun-Xiu Li
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P.R. China
| | - Jian-He Xu
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Center for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P.R. China
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6
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Li M, Cui Y, Xu Z, Chen X, Feng J, Wang M, Yao P, Wu Q, Zhu D. Asymmetric Synthesis of
N
‐Substituted γ‐Amino Esters and γ‐Lactams Containing α,γ‐Stereogenic Centers via a Stereoselective Enzymatic Cascade. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202100953] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Ming Li
- Key Laboratory of Industrial Fermentation Microbiology, Ministry of Education, College of Biotechnology Tianjin University of Science & Technology Tianjin 300457 People's Republic of China
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Yunfeng Cui
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Zefei Xu
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Xi Chen
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Jinhui Feng
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Min Wang
- Key Laboratory of Industrial Fermentation Microbiology, Ministry of Education, College of Biotechnology Tianjin University of Science & Technology Tianjin 300457 People's Republic of China
| | - Peiyuan Yao
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Qiaqing Wu
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
| | - Dunming Zhu
- National Technology Innovation Center of Synthetic Biology, National Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology Chinese Academy of Sciences 32 Xi Qi Dao, Tianjin Airport Economic Park Tianjin 300308 People's Republic of China
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7
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Jiang W, Zeng W. Construction of a Self-Purification and Self-Assembly Coenzyme Regeneration System for the Synthesis of Chiral Drug Intermediates. ACS OMEGA 2021; 6:1911-1916. [PMID: 33521431 PMCID: PMC7841785 DOI: 10.1021/acsomega.0c04668] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
As one of the important research contents of synthetic biology, the construction of a regulatory system exhibits great potential in the synthesis of high value-added chemicals such as drug intermediates. In this work, a self-assembly coenzyme regeneration system, leucine dehydrogenase (LeuDH)-formate dehydrogenase (FDH) protein co-assembly system, was constructed by using the polypeptide, SpyTag/SpyCatcher. Then, it was demonstrated that the nonchromatographic inverse transition cycling purification method could purify intracellular coupling proteins and extracellular coupling proteins well. The conversion rate of the pure LeuDH-FDH protein assembly (FR-LR) was shown to be 1.6-fold and 32.3-fold higher than that of the free LeuDH-FDH system (LeuDH + FDH) and free LeuDH, respectively. This work has paved a new way of constructing a protein self-assembly system and engineering self-purification coenzyme regeneration system for the synthesis of chiral amino acids or chiral α-hydroxy acids.
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Affiliation(s)
- Wei Jiang
- ; . Tel.: +86-05926162305. Fax: +86-05926162305
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8
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Acevedo-Rocha CG, Hollmann F, Sanchis J, Sun Z. A Pioneering Career in Catalysis: Manfred T. Reetz. ACS Catal 2020. [DOI: 10.1021/acscatal.0c04108] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, van der Maasweg 9, 2629 HZ Deft, Netherlands
| | - Joaquin Sanchis
- Monash Institute of Pharmaceutical Sciences, Monash University, 399 Royal Parade, Parkville 3052, Victoria, Australia
| | - Zhoutong Sun
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin, 300308 China
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9
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Li RJ, Zhang Z, Acevedo-Rocha CG, Zhao J, Li A. Biosynthesis of organic molecules via artificial cascade reactions based on cytochrome P450 monooxygenases. GREEN SYNTHESIS AND CATALYSIS 2020. [DOI: 10.1016/j.gresc.2020.05.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
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10
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Gao C, Zheng T. Drug metabolite synthesis by immobilized human FMO3 and whole cell catalysts. Microb Cell Fact 2019; 18:133. [PMID: 31405378 PMCID: PMC6691536 DOI: 10.1186/s12934-019-1189-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 08/07/2019] [Indexed: 12/26/2022] Open
Abstract
Background Sufficient reference standards of drug metabolites are required in the drug discovery and development process. However, such drug standards are often expensive or not commercially available. Chemical synthesis of drug metabolite is often difficulty due to the highly regio- and stereo-chemically demanding. The present work aims to construct stable and efficient biocatalysts for the generation of drug metabolites in vitro. Result In this work, using benzydamine as a model drug, two easy-to-perform approaches (whole cell catalysis and enzyme immobilization) were investigated for the synthesis of FMO3-generated drug metabolites. The whole cell catalysis was carried out by using cell suspensions of E. coli JM109 harboring FMO3 and E. coli BL21 harboring GDH (glucose dehydrogenase), giving 1.2 g/L benzydamine N-oxide within 9 h under the optimized conditions. While for another approach, two HisTrap HP columns respectively carrying His6-GDH and His6-FMO3 were connected in series used for the biocatalysis. In this case, 0.47 g/L benzydamine N-oxide was generated within 2.5 h under the optimized conditions. In addition, FMO3 immobilization at the C-terminal (membrane anchor region) significantly improved its enzymatic thermostability by more than 10 times. Moreover, the high efficiency of these two biocatalytic approaches was also confirmed by the N-oxidation of tamoxifen. Conclusions The results presented in this work provides new possibilities for the drug-metabolizing enzymes-mediated biocatalysis. Electronic supplementary material The online version of this article (10.1186/s12934-019-1189-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Chongliang Gao
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123, Turin, Italy.
| | - Tingjie Zheng
- Department of Life Sciences and Systems Biology, University of Torino, Via Accademia Albertina 13, 10123, Turin, Italy
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11
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Wu S, Zhou Y, Li Z. Biocatalytic selective functionalisation of alkenes via single-step and one-pot multi-step reactions. Chem Commun (Camb) 2019; 55:883-896. [PMID: 30566124 DOI: 10.1039/c8cc07828a] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Alkenes are excellent starting materials for organic synthesis due to the versatile reactivity of C[double bond, length as m-dash]C bonds and the easy availability of many unfunctionalised alkenes. Direct regio- and/or enantioselective conversion of alkenes into functionalised (chiral) compounds has enormous potential for industrial applications, and thus has attracted the attention of researchers for extensive development using chemo-catalysis over the past few years. On the other hand, many enzymes have also been employed for conversion of alkenes in a highly selective and much greener manner to offer valuable products. Herein, we review recent advances in seven well-known types of biocatalytic conversion of alkenes. Remarkably, recent mechanism-guided directed evolution and enzyme cascades have enabled the development of seven novel types of single-step and one-pot multi-step functionalisation of alkenes, some of which are even unattainable via chemo-catalysis. These new reactions are particularly highlighted in this feature article. Overall, we present an ever-expanding enzyme toolbox for various alkene functionalisations inspiring further research in this fast-developing theme.
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Affiliation(s)
- Shuke Wu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585.
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12
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Dirkmann M, Nowack J, Schulz F. An in Vitro Biosynthesis of Sesquiterpenes Starting from Acetic Acid. Chembiochem 2018; 19:2146-2151. [DOI: 10.1002/cbic.201800128] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Revised: 08/07/2018] [Indexed: 12/20/2022]
Affiliation(s)
- Michael Dirkmann
- Fakultät für Chemie und Biochemie; Organische Chemie I; Ruhr-Universität Bochum; Universitätsstrasse 150 44780 Bochum Germany
| | - Julia Nowack
- Fakultät für Chemie und Biochemie; Organische Chemie I; Ruhr-Universität Bochum; Universitätsstrasse 150 44780 Bochum Germany
| | - Frank Schulz
- Fakultät für Chemie und Biochemie; Organische Chemie I; Ruhr-Universität Bochum; Universitätsstrasse 150 44780 Bochum Germany
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13
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Hadi T, Dı́az-Rodrı́guez A, Khan D, Morrison JP, Kaplan JM, Gallagher KT, Schober M, Webb MR, Brown KK, Fuerst D, Snajdrova R, Roiban GD. Identification and Implementation of Biocatalytic Transformations in Route Discovery: Synthesis of Chiral 1,3-Substituted Cyclohexanone Building Blocks. Org Process Res Dev 2018. [DOI: 10.1021/acs.oprd.8b00139] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Timin Hadi
- Advanced Manufacturing Technologies, GlaxoSmithKline, 709 Swedeland Road, King of Prussia, Pennsylvania 19406, United States
| | - Alba Dı́az-Rodrı́guez
- API Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Diluar Khan
- API Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - James P. Morrison
- Advanced Manufacturing Technologies, GlaxoSmithKline, 709 Swedeland Road, King of Prussia, Pennsylvania 19406, United States
| | - Justin M. Kaplan
- API Chemistry, GlaxoSmithKline, 709 Swedeland Road, King of Prussia, Pennsylvania 19406, United States
| | - Kathleen T. Gallagher
- Advanced Manufacturing Technologies, GlaxoSmithKline, 709 Swedeland Road, King of Prussia, Pennsylvania 19406, United States
| | - Markus Schober
- Advanced Manufacturing Technologies, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Michael R. Webb
- API Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Kristin K. Brown
- Molecular Design, Computational and Modeling Sciences, GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, Pennsylvania 19426, United States
| | - Douglas Fuerst
- Advanced Manufacturing Technologies, GlaxoSmithKline, 709 Swedeland Road, King of Prussia, Pennsylvania 19406, United States
| | - Radka Snajdrova
- API Chemistry, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
| | - Gheorghe-Doru Roiban
- Advanced Manufacturing Technologies, GlaxoSmithKline, Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom
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14
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Heckenbichler K, Schweiger A, Brandner LA, Binter A, Toplak M, Macheroux P, Gruber K, Breinbauer R. Asymmetric Reductive Carbocyclization Using Engineered Ene Reductases. Angew Chem Int Ed Engl 2018; 57:7240-7244. [PMID: 29689601 PMCID: PMC6033016 DOI: 10.1002/anie.201802962] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Indexed: 01/14/2023]
Abstract
Ene reductases from the Old Yellow Enzyme (OYE) family reduce the C=C double bond in α,β-unsaturated compounds bearing an electron-withdrawing group, for example, a carbonyl group. This asymmetric reduction has been exploited for biocatalysis. Going beyond its canonical function, we show that members of this enzyme family can also catalyze the formation of C-C bonds. α,β-Unsaturated aldehydes and ketones containing an additional electrophilic group undergo reductive cyclization. Mechanistically, the two-electron-reduced enzyme cofactor FMN delivers a hydride to generate an enolate intermediate, which reacts with the internal electrophile. Single-site replacement of a crucial Tyr residue with a non-protic Phe or Trp favored the cyclization over the natural reduction reaction. The new transformation enabled the enantioselective synthesis of chiral cyclopropanes in up to >99 % ee.
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Affiliation(s)
- Kathrin Heckenbichler
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 98010GrazAustria
| | - Anna Schweiger
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 98010GrazAustria
| | - Lea Alexandra Brandner
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 98010GrazAustria
| | - Alexandra Binter
- Institute of BiochemistryGraz University of TechnologyPetersgasse 10–128010GrazAustria
- Austrian Centre of Industrial Biotechnology (ACIB)Petersgasse 148010GrazAustria
| | - Marina Toplak
- Institute of BiochemistryGraz University of TechnologyPetersgasse 10–128010GrazAustria
| | - Peter Macheroux
- Institute of BiochemistryGraz University of TechnologyPetersgasse 10–128010GrazAustria
| | - Karl Gruber
- Austrian Centre of Industrial Biotechnology (ACIB)Petersgasse 148010GrazAustria
- Institute of Molecular BiosciencesUniversity of GrazHumboldtstraße 508010GrazAustria
| | - Rolf Breinbauer
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 98010GrazAustria
- Austrian Centre of Industrial Biotechnology (ACIB)Petersgasse 148010GrazAustria
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15
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Heckenbichler K, Schweiger A, Brandner LA, Binter A, Toplak M, Macheroux P, Gruber K, Breinbauer R. Asymmetrische reduktive Carbocyclisierung durch modifizierte En-Reduktasen. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802962] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kathrin Heckenbichler
- Institut für Organische Chemie; Technische Universität Graz; Stremayrgasse 9 8010 Graz Österreich
| | - Anna Schweiger
- Institut für Organische Chemie; Technische Universität Graz; Stremayrgasse 9 8010 Graz Österreich
| | - Lea Alexandra Brandner
- Institut für Organische Chemie; Technische Universität Graz; Stremayrgasse 9 8010 Graz Österreich
| | - Alexandra Binter
- Institut für Biochemie; Technische Universität Graz; Petersgasse 10-12 8010 Graz Österreich
- Austrian Centre of Industrial Biotechnology (ACIB); Petersgasse 14 8010 Graz Österreich
| | - Marina Toplak
- Institut für Biochemie; Technische Universität Graz; Petersgasse 10-12 8010 Graz Österreich
| | - Peter Macheroux
- Institut für Biochemie; Technische Universität Graz; Petersgasse 10-12 8010 Graz Österreich
| | - Karl Gruber
- Austrian Centre of Industrial Biotechnology (ACIB); Petersgasse 14 8010 Graz Österreich
- Institut für Molekulare Biowissenschaften; Karl-Franzens-Universität Graz; Humboldtstraße 50 8010 Graz Österreich
| | - Rolf Breinbauer
- Institut für Organische Chemie; Technische Universität Graz; Stremayrgasse 9 8010 Graz Österreich
- Austrian Centre of Industrial Biotechnology (ACIB); Petersgasse 14 8010 Graz Österreich
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16
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Promoter engineering of cascade biocatalysis for α-ketoglutaric acid production by coexpressing l-glutamate oxidase and catalase. Appl Microbiol Biotechnol 2018; 102:4755-4764. [DOI: 10.1007/s00253-018-8975-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 03/22/2018] [Accepted: 03/28/2018] [Indexed: 01/13/2023]
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17
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Affiliation(s)
- Shuke Wu
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Zhi Li
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
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18
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Wiesinger T, Bayer T, Milker S, Mihovilovic MD, Rudroff F. Cell Factory Design and Optimization for the Stereoselective Synthesis of Polyhydroxylated Compounds. Chembiochem 2018; 19:361-368. [PMID: 28980776 DOI: 10.1002/cbic.201700464] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Indexed: 11/06/2022]
Abstract
A synthetic cascade for the transformation of primary alcohols into polyhydroxylated compounds in Escherichia coli, through the in situ preparation of cytotoxic aldehyde intermediates and subsequent aldolase-mediated C-C bond formation, has been investigated. An enzymatic toolbox consisting of alcohol dehydrogenase AlkJ from Pseudomonas putida and the dihydroxyacetone-/hydroxyacetone-accepting aldolase variant Fsa1-A129S was applied. Pathway optimization was performed at the genetic and process levels. Three different arrangements of the alkJ and fsa1-A129S genes in operon, monocistronic, and pseudo-operon configuration were tested. The last of these proved to be most beneficial with regard to bacterial growth and protein expression levels. The optimized whole-cell catalyst, combined with a refined solid-phase extraction downstream purification protocol, provides diastereomerically pure carbohydrate derivatives that can be isolated in up to 91 % yield over two reaction steps.
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Affiliation(s)
- Thomas Wiesinger
- Institute of Applied Synthetic Chemistry, OC-163, TU Wien, Getreidemarkt 9, 1060, Vienna, Austria
| | - Thomas Bayer
- Institute of Applied Synthetic Chemistry, OC-163, TU Wien, Getreidemarkt 9, 1060, Vienna, Austria
| | - Sofia Milker
- Institute of Applied Synthetic Chemistry, OC-163, TU Wien, Getreidemarkt 9, 1060, Vienna, Austria
| | - Marko D Mihovilovic
- Institute of Applied Synthetic Chemistry, OC-163, TU Wien, Getreidemarkt 9, 1060, Vienna, Austria
| | - Florian Rudroff
- Institute of Applied Synthetic Chemistry, OC-163, TU Wien, Getreidemarkt 9, 1060, Vienna, Austria
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19
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Winkler CK, Faber K, Hall M. Biocatalytic reduction of activated CC-bonds and beyond: emerging trends. Curr Opin Chem Biol 2018; 43:97-105. [PMID: 29275291 DOI: 10.1016/j.cbpa.2017.12.003] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 11/02/2017] [Accepted: 12/04/2017] [Indexed: 01/01/2023]
Abstract
The biocatalytic reduction of activated CC-bonds is dominated by ene-reductases from the Old Yellow Enzyme family, which gained broad practical use owing to exquisite stereoselectivity combined with wide substrate scope. Protein diversity is fostered by mining distinct protein classes and by implementing protein engineering techniques. Recent efforts are focusing on expanding the chemical complexity of the product portfolio, either through substrate functionalization or design of multi-step reactions. This review also highlights unusual chemistries catalyzed by ene-reductases and presents emerging methodologies developed to bypass the need of natural nicotinamide cofactors.
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Affiliation(s)
| | - Kurt Faber
- Department of Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Mélanie Hall
- Department of Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz, Austria.
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20
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Milker S, Fink MJ, Oberleitner N, Ressmann AK, Bornscheuer UT, Mihovilovic MD, Rudroff F. Kinetic Modeling of an Enzymatic Redox Cascade In Vivo Reveals Bottlenecks Caused by Cofactors. ChemCatChem 2017. [DOI: 10.1002/cctc.201700573] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Sofia Milker
- Institute of Applied Chemistry; TU Wien; Getreidemarkt 9/163-OC 1060 Vienna Austria
| | - Michael J. Fink
- Department of Chemistry and Chemical Biology; Harvard University; 12 Oxford St Cambridge MA 02138 USA
| | - Nikolin Oberleitner
- Institute of Applied Chemistry; TU Wien; Getreidemarkt 9/163-OC 1060 Vienna Austria
| | - Anna K. Ressmann
- Institute of Applied Chemistry; TU Wien; Getreidemarkt 9/163-OC 1060 Vienna Austria
| | - Uwe T. Bornscheuer
- Institute of Biochemistry, Dept. of Biotechnology & Enzyme Catalysis; Greifswald University; Felix-Hausdorff-Str. 4 17489 Greifswald Germany
| | - Marko D. Mihovilovic
- Institute of Applied Chemistry; TU Wien; Getreidemarkt 9/163-OC 1060 Vienna Austria
| | - Florian Rudroff
- Institute of Applied Chemistry; TU Wien; Getreidemarkt 9/163-OC 1060 Vienna Austria
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21
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Farnberger JE, Lorenz E, Richter N, Wendisch VF, Kroutil W. In vivo plug-and-play: a modular multi-enzyme single-cell catalyst for the asymmetric amination of ketoacids and ketones. Microb Cell Fact 2017; 16:132. [PMID: 28754115 PMCID: PMC5534079 DOI: 10.1186/s12934-017-0750-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 07/24/2017] [Indexed: 11/24/2022] Open
Abstract
Background Transaminases have become a key tool in biocatalysis to introduce the amine functionality into a range of molecules like prochiral α-ketoacids and ketones. However, due to the necessity of shifting the equilibrium towards the product side (depending on the amine donor) an efficient amination system may require three enzymes. So far, this well-established transformation has mainly been performed in vitro by assembling all biocatalysts individually, which comes along with elaborate and costly preparation steps. We present the design and characterization of a flexible approach enabling a quick set-up of single-cell biocatalysts producing the desired enzymes. By choosing an appropriate co-expression strategy, a modular system was obtained, allowing for flexible plug-and-play combination of enzymes chosen from the toolbox of available transaminases and/or recycling enzymes tailored for the desired application. Results By using a two-plasmid strategy for the recycling enzyme and the transaminase together with chromosomal integration of an amino acid dehydrogenase, two enzyme modules could individually be selected and combined with specifically tailored E. coli strains. Various plug-and-play combinations of the enzymes led to the construction of a series of single-cell catalysts suitable for the amination of various types of substrates. On the one hand the fermentative amination of α-ketoacids coupled both with metabolic and non-metabolic cofactor regeneration was studied, giving access to the corresponding α-amino acids in up to 96% conversion. On the other hand, biocatalysts were employed in a non-metabolic, “in vitro-type” asymmetric reductive amination of the prochiral ketone 4-phenyl-2-butanone, yielding the amine in good conversion (77%) and excellent stereoselectivity (ee = 98%). Conclusions The described modularized concept enables the construction of tailored single-cell catalysts which provide all required enzymes for asymmetric reductive amination in a flexible fashion, representing a more efficient approach for the production of chiral amines and amino acids. Electronic supplementary material The online version of this article (doi:10.1186/s12934-017-0750-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Judith E Farnberger
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o University of Graz, Heinrichstrasse 28, 8010, Graz, Austria
| | - Elisabeth Lorenz
- Genetics of Prokaryotes, Faculty of Biology & CeBiTec, Bielefeld University, 33501, Bielefeld, Germany
| | - Nina Richter
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o University of Graz, Heinrichstrasse 28, 8010, Graz, Austria
| | - Volker F Wendisch
- Genetics of Prokaryotes, Faculty of Biology & CeBiTec, Bielefeld University, 33501, Bielefeld, Germany.
| | - Wolfgang Kroutil
- Austrian Centre of Industrial Biotechnology, ACIB GmbH, c/o University of Graz, Heinrichstrasse 28, 8010, Graz, Austria. .,Institute of Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010, Graz, Austria.
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22
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Tavanti M, Parmeggiani F, Castellanos JRG, Mattevi A, Turner NJ. One-Pot Biocatalytic Double Oxidation of α-Isophorone for the Synthesis of Ketoisophorone. ChemCatChem 2017. [DOI: 10.1002/cctc.201700620] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Michele Tavanti
- Manchester Institute of Biotechnology (MIB); School of Chemistry; The University of Manchester; 131 Princess Street M1 7DN Manchester United Kingdom
| | - Fabio Parmeggiani
- Manchester Institute of Biotechnology (MIB); School of Chemistry; The University of Manchester; 131 Princess Street M1 7DN Manchester United Kingdom
| | - J. Rubén Gómez Castellanos
- Department of Biology and Biotechnology “Lazzaro Spallanzani”; University of Pavia; Via Ferrata 9 27100 Pavia Italy
| | - Andrea Mattevi
- Department of Biology and Biotechnology “Lazzaro Spallanzani”; University of Pavia; Via Ferrata 9 27100 Pavia Italy
| | - Nicholas J. Turner
- Manchester Institute of Biotechnology (MIB); School of Chemistry; The University of Manchester; 131 Princess Street M1 7DN Manchester United Kingdom
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23
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Wu S, Zhou Y, Seet D, Li Z. Regio- and Stereoselective Oxidation of Styrene Derivatives to Arylalkanoic AcidsviaOne-Pot Cascade Biotransformations. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201700416] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Shuke Wu
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456
| | - Yi Zhou
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456
| | - Daniel Seet
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585
| | - Zhi Li
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456
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24
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Schrittwieser JH, Velikogne S, Hall M, Kroutil W. Artificial Biocatalytic Linear Cascades for Preparation of Organic Molecules. Chem Rev 2017; 118:270-348. [DOI: 10.1021/acs.chemrev.7b00033] [Citation(s) in RCA: 371] [Impact Index Per Article: 53.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Joerg H. Schrittwieser
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Stefan Velikogne
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
| | - Mélanie Hall
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Wolfgang Kroutil
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
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25
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Nett N, Duewel S, Richter AA, Hoebenreich S. Revealing Additional Stereocomplementary Pairs of Old Yellow Enzymes by Rational Transfer of Engineered Residues. Chembiochem 2017; 18:685-691. [PMID: 28107586 DOI: 10.1002/cbic.201600688] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Indexed: 01/01/2023]
Abstract
Every year numerous protein engineering and directed evolution studies are published, increasing the knowledge that could be used by protein engineers. Here we test a protein engineering strategy that allows quick access to improved biocatalysts with very little screening effort. Conceptually it is assumed that engineered residues previously identified by rational and random methods induce similar improvements when transferred to family members. In an application to ene-reductases from the Old Yellow Enzyme (OYE) family, the newly created variants were tested with three compounds, revealing more stereocomplementary OYE pairs with potent turnover frequencies (up to 660 h-1 ) and excellent stereoselectivities (up to >99 %). Although systematic prediction of absolute enantioselectivity of OYE variants remains a challenge, "scaffold sampling" was confirmed as a promising addition to protein engineers' collection of strategies.
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Affiliation(s)
- Nathalie Nett
- Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, 35032, Marburg, Germany
| | - Sabine Duewel
- Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, 35032, Marburg, Germany
| | - Alexandra Annelis Richter
- Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, 35032, Marburg, Germany
| | - Sabrina Hoebenreich
- Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse 4, 35032, Marburg, Germany
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26
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Quin MB, Wallin KK, Zhang G, Schmidt-Dannert C. Spatial organization of multi-enzyme biocatalytic cascades. Org Biomol Chem 2017; 15:4260-4271. [DOI: 10.1039/c7ob00391a] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Multi-enzyme cascades provide a wealth of valuable chemicals. Efficiency of reaction schemes can be improved by spatial organization of biocatalysts. This review will highlight various methods of spatial organization of biocatalysts: fusion, immobilization, scaffolding and encapsulation.
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Affiliation(s)
- M. B. Quin
- University of Minnesota
- Dept. of Biochemistry
- Molecular Biology and Biophysics
- St Paul
- USA
| | - K. K. Wallin
- University of Minnesota
- Dept. of Biochemistry
- Molecular Biology and Biophysics
- St Paul
- USA
| | - G. Zhang
- University of Minnesota
- Dept. of Biochemistry
- Molecular Biology and Biophysics
- St Paul
- USA
| | - C. Schmidt-Dannert
- University of Minnesota
- Dept. of Biochemistry
- Molecular Biology and Biophysics
- St Paul
- USA
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27
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A whole cell biocatalyst for double oxidation of cyclooctane. ACTA ACUST UNITED AC 2016; 43:1641-1646. [DOI: 10.1007/s10295-016-1844-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 09/28/2016] [Indexed: 10/20/2022]
Abstract
Abstract
A novel whole cell cascade for double oxidation of cyclooctane to cyclooctanone was developed. The one-pot oxidation cascade requires only a minimum of reaction components: resting E. coli cells in aqueous buffered medium (=catalyst), the target substrate and oxygen as environmental friendly oxidant. Conversion of cyclooctane was catalysed with high efficiency (50% yield) and excellent selectivity (>94%) to cyclooctanone. The reported oxidation cascade represents a novel whole cell system for double oxidation of non-activated alkanes including an integrated cofactor regeneration. Notably, two alcohol dehydrogenases from Lactobacillus brevis and from Rhodococcus erythropolis with opposite cofactor selectivities and one monooxygenase P450 BM3 were produced in a coexpression system in one single host. The system represents the most efficient route with a TTN of up to 24363 being a promising process in terms of sustainability as well.
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28
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Skalden L, Peters C, Ratz L, Bornscheuer UT. Synthesis of (1R,3R)-1-amino-3-methylcyclohexane by an enzyme cascade reaction. Tetrahedron 2016. [DOI: 10.1016/j.tet.2015.11.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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29
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Li A, Ilie A, Sun Z, Lonsdale R, Xu JH, Reetz MT. Whole-Cell-Catalyzed Multiple Regio- and Stereoselective Functionalizations in Cascade Reactions Enabled by Directed Evolution. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605990] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Aitao Li
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Adriana Ilie
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Zhoutong Sun
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Richard Lonsdale
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Jian-He Xu
- State Key Laboratory of Bioreactor Engineering; East China University of Science and Technology; Shanghai 200237 China
| | - Manfred T. Reetz
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
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30
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Li A, Ilie A, Sun Z, Lonsdale R, Xu JH, Reetz MT. Whole-Cell-Catalyzed Multiple Regio- and Stereoselective Functionalizations in Cascade Reactions Enabled by Directed Evolution. Angew Chem Int Ed Engl 2016; 55:12026-9. [DOI: 10.1002/anie.201605990] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 07/18/2016] [Indexed: 12/25/2022]
Affiliation(s)
- Aitao Li
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Adriana Ilie
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Zhoutong Sun
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Richard Lonsdale
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
| | - Jian-He Xu
- State Key Laboratory of Bioreactor Engineering; East China University of Science and Technology; Shanghai 200237 China
| | - Manfred T. Reetz
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
- Fachbereich Chemie der Philipps-Universität; Hans-Meerwein-Strasse 35032 Marburg Germany
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31
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Zhou Y, Wu S, Li Z. Cascade Biocatalysis for Sustainable Asymmetric Synthesis: From Biobased l-Phenylalanine to High-Value Chiral Chemicals. Angew Chem Int Ed Engl 2016; 55:11647-50. [PMID: 27512928 DOI: 10.1002/anie.201606235] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Indexed: 11/08/2022]
Abstract
Sustainable synthesis of useful and valuable chiral fine chemicals from renewable feedstocks is highly desirable but remains challenging. Reported herein is a designed and engineered set of unique non-natural biocatalytic cascades to achieve the asymmetric synthesis of chiral epoxide, diols, hydroxy acid, and amino acid in high yield and with excellent ee values from the easily available biobased l-phenylalanine. Each of the cascades was efficiently performed in one pot by using the cells of a single recombinant strain over-expressing 4-10 different enzymes. The cascade biocatalysis approach is promising for upgrading biobased bulk chemicals to high-value chiral chemicals. In addition, combining the non-natural enzyme cascades with the natural metabolic pathway of the host strain enabled the fermentative production of the chiral fine chemicals from glucose.
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Affiliation(s)
- Yi Zhou
- Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, 28 Medical Drive, Singapore, 117456, Singapore
| | - Shuke Wu
- Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, 28 Medical Drive, Singapore, 117456, Singapore.,Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore, 117585, Singapore
| | - Zhi Li
- Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, 28 Medical Drive, Singapore, 117456, Singapore. .,Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore, 117585, Singapore.
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32
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Zhou Y, Wu S, Li Z. Cascade Biocatalysis for Sustainable Asymmetric Synthesis: From Biobasedl-Phenylalanine to High-Value Chiral Chemicals. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201606235] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Yi Zhou
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456 Singapore
| | - Shuke Wu
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456 Singapore
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Zhi Li
- Synthetic Biology for Clinical and Technological Innovation (SynCTI); Life Sciences Institute; National University of Singapore; 28 Medical Drive Singapore 117456 Singapore
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
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33
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Construction of a tunable multi-enzyme-coordinate expression system for biosynthesis of chiral drug intermediates. Sci Rep 2016; 6:30462. [PMID: 27456301 PMCID: PMC4960608 DOI: 10.1038/srep30462] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Accepted: 07/06/2016] [Indexed: 12/13/2022] Open
Abstract
Systems that can regulate and coordinate the expression of multiple enzymes for metabolic regulation and synthesis of important drug intermediates are poorly explored. In this work, a strategy for constructing a tunable multi-enzyme-coordinate expression system for biosynthesis of chiral drug intermediates was developed and evaluated by connecting protein-protein expressions, regulating the strength of ribosome binding sites (RBS) and detecting the system capacity for producing chiral amino acid. Results demonstrated that the dual-enzyme system had good enantioselectivity, low cost, high stability, high conversion rate and approximately 100% substrate conversion. This study has paved a new way of exploring metabolic mechanism of functional genes and engineering whole cell-catalysts for synthesis of chiral α-hydroxy acids or chiral amino acids.
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34
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Reetz MT. What are the Limitations of Enzymes in Synthetic Organic Chemistry? CHEM REC 2016; 16:2449-2459. [DOI: 10.1002/tcr.201600040] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Indexed: 12/31/2022]
Affiliation(s)
- Manfred T. Reetz
- Fachbereich Chemie (15) Philipps-Universität Marburg Hans-Meerwein Straße; 35032 Marburg Germany
- Max-Planck-Institut für Kohlenforschung; Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Germany
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35
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Wu S, Zhou Y, Wang T, Too HP, Wang DIC, Li Z. Highly regio- and enantioselective multiple oxy- and amino-functionalizations of alkenes by modular cascade biocatalysis. Nat Commun 2016; 7:11917. [PMID: 27297777 PMCID: PMC4911676 DOI: 10.1038/ncomms11917] [Citation(s) in RCA: 113] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Accepted: 05/12/2016] [Indexed: 12/24/2022] Open
Abstract
New types of asymmetric functionalizations of alkenes are highly desirable for chemical synthesis. Here, we develop three novel types of regio- and enantioselective multiple oxy- and amino-functionalizations of terminal alkenes via cascade biocatalysis to produce chiral α-hydroxy acids, 1,2-amino alcohols and α-amino acids, respectively. Basic enzyme modules 1–4 are developed to convert alkenes to (S)-1,2-diols, (S)-1,2-diols to (S)-α-hydroxyacids, (S)-1,2-diols to (S)-aminoalcohols and (S)-α-hydroxyacids to (S)-α-aminoacids, respectively. Engineering of enzyme modules 1 & 2, 1 & 3 and 1, 2 & 4 in Escherichia coli affords three biocatalysts over-expressing 4–8 enzymes for one-pot conversion of styrenes to the corresponding (S)-α-hydroxyacids, (S)-aminoalcohols and (S)-α-aminoacids in high e.e. and high yields, respectively. The new types of asymmetric alkene functionalizations provide green, safe and useful alternatives to the chemical syntheses of these compounds. The modular approach for engineering multi-step cascade biocatalysis is useful for developing other new types of one-pot biotransformations for chemical synthesis. Biocatalysis can perform highly selective multi-step synthesis in one pot, but with a limited range of non-natural reactions and products. Here, the authors report regio- and enantioselective bio-cascades, able to convert styrenes into a number of nitrogen and oxygen containing chiral molecules.
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Affiliation(s)
- Shuke Wu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore 117585, Singapore.,Singapore-MIT Alliance, National University of Singapore, Singapore 117583, Singapore.,Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore 117456, Singapore
| | - Yi Zhou
- Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore 117456, Singapore
| | - Tianwen Wang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore 117585, Singapore
| | - Heng-Phon Too
- Singapore-MIT Alliance, National University of Singapore, Singapore 117583, Singapore
| | - Daniel I C Wang
- Singapore-MIT Alliance, National University of Singapore, Singapore 117583, Singapore.,Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Zhi Li
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore 117585, Singapore.,Singapore-MIT Alliance, National University of Singapore, Singapore 117583, Singapore.,Synthetic Biology for Clinical and Technological Innovation (SynCTI), Life Sciences Institute, National University of Singapore, Singapore 117456, Singapore
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Dennig A, Busto E, Kroutil W, Faber K. Biocatalytic One-Pot Synthesis of l-Tyrosine Derivatives from Monosubstituted Benzenes, Pyruvate, and Ammonia. ACS Catal 2015. [DOI: 10.1021/acscatal.5b02129] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexander Dennig
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Eduardo Busto
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Wolfgang Kroutil
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Kurt Faber
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
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Gourinchas G, Busto E, Killinger M, Richter N, Wiltschi B, Kroutil W. A synthetic biology approach for the transformation of l-α-amino acids to the corresponding enantiopure (R)- or (S)-α-hydroxy acids. Chem Commun (Camb) 2015; 51:2828-31. [PMID: 25574527 DOI: 10.1039/c4cc08286a] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Combinatorial assembly and variation of promoters on a single expression plasmid allowed the balance of the catalytic steps of a three enzyme (l-AAD, HIC, FDH) cascade in E. coli. The designer cell catalyst quantitatively transformed l-amino acids to the corresponding optically pure (R)- and (S)-α-hydroxy acids at up to 200 mM substrate concentration.
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Affiliation(s)
- Geoffrey Gourinchas
- Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria.
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38
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Ricklefs E, Girhard M, Koschorreck K, Smit MS, Urlacher VB. Two-Step One-Pot Synthesis of Pinoresinol from Eugenol in an Enzymatic Cascade. ChemCatChem 2015. [DOI: 10.1002/cctc.201500182] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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39
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Bayer T, Milker S, Wiesinger T, Rudroff F, Mihovilovic MD. Designer Microorganisms for Optimized Redox Cascade Reactions - Challenges and Future Perspectives. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500202] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Muschiol J, Peters C, Oberleitner N, Mihovilovic MD, Bornscheuer UT, Rudroff F. Cascade catalysis – strategies and challenges en route to preparative synthetic biology. Chem Commun (Camb) 2015; 51:5798-811. [DOI: 10.1039/c4cc08752f] [Citation(s) in RCA: 251] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In this feature article recent progress and future perspectives of cascade catalysis combining bio/bio or bio/chemo catalysts are presented.
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Affiliation(s)
- Jan Muschiol
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Christin Peters
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Nikolin Oberleitner
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
| | - Marko D. Mihovilovic
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
| | - Uwe T. Bornscheuer
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Florian Rudroff
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
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41
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Roiban GD, Reetz MT. Expanding the toolbox of organic chemists: directed evolution of P450 monooxygenases as catalysts in regio- and stereoselective oxidative hydroxylation. Chem Commun (Camb) 2015; 51:2208-24. [DOI: 10.1039/c4cc09218j] [Citation(s) in RCA: 120] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Cytochrome P450 enzymes (CYPs) have been used for more than six decades as catalysts for the CH-activating oxidative hydroxylation of organic compounds with formation of added-value products.
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Affiliation(s)
| | - Manfred T. Reetz
- Department of Chemistry
- Philipps-Universität Marburg
- 35032 Marburg
- Germany
- Max-Planck-Institut für Kohlenforschung
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42
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Pennec A, Hollmann F, Smit MS, Opperman DJ. One-pot Conversion of Cycloalkanes to Lactones. ChemCatChem 2014. [DOI: 10.1002/cctc.201402835] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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43
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Köhler V, Turner NJ. Artificial concurrent catalytic processes involving enzymes. Chem Commun (Camb) 2014; 51:450-64. [PMID: 25350691 DOI: 10.1039/c4cc07277d] [Citation(s) in RCA: 96] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The concurrent operation of multiple catalysts can lead to enhanced reaction features including (i) simultaneous linear multi-step transformations in a single reaction flask (ii) the control of intermediate equilibria (iii) stereoconvergent transformations (iv) rapid processing of labile reaction products. Enzymes occupy a prominent position for the development of such processes, due to their high potential compatibility with other biocatalysts. Genes for different enzymes can be co-expressed to reconstruct natural or construct artificial pathways and applied in the form of engineered whole cell biocatalysts to carry out complex transformations or, alternatively, the enzymes can be combined in vitro after isolation. Moreover, enzyme variants provide a wider substrate scope for a given reaction and often display altered selectivities and specificities. Man-made transition metal catalysts and engineered or artificial metalloenzymes also widen the range of reactivities and catalysed reactions that are potentially employable. Cascades for simultaneous cofactor or co-substrate regeneration or co-product removal are now firmly established. Many applications of more ambitious concurrent cascade catalysis are only just beginning to appear in the literature. The current review presents some of the most recent examples, with an emphasis on the combination of transition metal with enzymatic catalysis and aims to encourage researchers to contribute to this emerging field.
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Affiliation(s)
- Valentin Köhler
- Department of Chemistry, University of Basel, Spitalststrasse 51, CH-4056 Basel, Switzerland.
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Busto E, Richter N, Grischek B, Kroutil W. Biocontrolled formal inversion or retention of L-α-amino acids to enantiopure (R)- or (S)-hydroxyacids. Chemistry 2014; 20:11225-8. [PMID: 25048982 DOI: 10.1002/chem.201403195] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Indexed: 02/05/2023]
Abstract
Natural L-α-amino acids and L-norleucine were transformed to the corresponding α-hydroxy acids by formal biocatalytic inversion or retention of absolute configuration. The one-pot transformation was achieved by a concurrent oxidation reduction cascade in aqueous media. A representative panel of enantiopure (R)- and (S)-2-hydroxy acids possessing aliphatic, aromatic and heteroaromatic moieties were isolated in high yield (67-85 %) and enantiopure form (>99 % ee) without requiring chromatographic purification.
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Affiliation(s)
- Eduardo Busto
- Department of Chemistry, Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, 8010 Graz (Austria)
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45
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Reetz MT. One Hundred Years of the Max-Planck-Institut für Kohlenforschung. Angew Chem Int Ed Engl 2014; 53:8562-86. [DOI: 10.1002/anie.201403217] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Indexed: 12/27/2022]
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