1
|
Shu J, Xiong W, Zhang R, Ma S, Zhou K, Wang X, Yan F, Huang D, Li J, Wu Y, He J. Glycan-selective in-situ growth of thermoresponsive polymers for thermoprecipitation and enrichment of N-glycoprotein/glycopeptides. Talanta 2023; 253:123956. [PMID: 36167012 DOI: 10.1016/j.talanta.2022.123956] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 09/13/2022] [Accepted: 09/19/2022] [Indexed: 12/13/2022]
Abstract
In view of the biological significance and micro-heterogeneity of protein glycosylation for human health, specific enrichment of N-glycosylated proteins/peptides from complex biological samples is a prerequisite for the discovery of disease biomarkers and clinical diagnosis. In this work, we propose a "grafting-from" N-glycoprotein enriching method based on the in-situ growth of thermoresponsive polymer brushes from the N-glycosylated site of proteins. The initiator was first attached to the pre-oxidized glycan moieties by hydrazide chemistry, from which the thermoresponsive polymers can be grown to form giant protein-polymer conjugates (PPC). The thermosensitive PPC can be precipitated and separated by raising the temperature to above its lower critical solubility temperature (LCST). Mass spectrometry verified 210 N-glycopeptides corresponding to 136 N-glycoproteins in the rabbit serum. These results demonstrate the capability of the tandem thermoprecipitation strategy to enrich and separate N-glycoprotein/glycopeptide. Due to its simplicity and efficiency specifically, this method holds the potential for identifying biomarkers from biological samples in N-glycoproteome analysis.
Collapse
Affiliation(s)
- Jingjing Shu
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Wenli Xiong
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Ran Zhang
- Central Laboratory of Health Quarantine, International Travel Health Care Center, Shenzhen Customs District. 1011 Fuqiang Road, Shenzhen, 518045, China
| | - Shanyun Ma
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Kaiqiang Zhou
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Xuwei Wang
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Fen Yan
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Da Huang
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Jianhua Li
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China
| | - Yuanzi Wu
- Research Institute of Photocatalysis, College of Biological Science and Engineering, Fuzhou University, 2 Xueyuan Road, Fuzhou, 350108, China.
| | - Jian'an He
- Central Laboratory of Health Quarantine, International Travel Health Care Center, Shenzhen Customs District. 1011 Fuqiang Road, Shenzhen, 518045, China.
| |
Collapse
|
2
|
A soluble pH-responsive host-guest-based nanosystem for homogeneous exosomes capture with high-efficiency. CHINESE CHEM LETT 2023. [DOI: 10.1016/j.cclet.2023.108129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
|
3
|
Yang J, Gao W, Liu R, Yu J, Wang C, Hu J, Tang K. One-Step Synthesis of Hydrophilic Nano-Floral Inter-Polymeric Material for Highly Selective Enrichment of N-Linked Glycopeptides. ANAL LETT 2021. [DOI: 10.1080/00032719.2021.1968888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Jiaqian Yang
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| | - Wenqing Gao
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| | - Rong Liu
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| | - Jiancheng Yu
- Faculty of Electrical Engineering and Computer Science, Ningbo University, Ningbo, Zhejiang, China
| | - Chenlu Wang
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| | - Jun Hu
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| | - Keqi Tang
- Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis of Zhejiang Province, Ningbo, Zhejiang, China
- Institute of Mass Spectrometry, School of Materials Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, China
| |
Collapse
|
4
|
Yan Y, Han R, Hou Y, Zhang H, Yu J, Gao W, Xu L, Tang K. Bowl-like mesoporous polydopamine with size exclusion for highly selective recognition of endogenous glycopeptides. Talanta 2021; 233:122468. [PMID: 34215103 DOI: 10.1016/j.talanta.2021.122468] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 04/16/2021] [Accepted: 04/23/2021] [Indexed: 01/01/2023]
Abstract
It has been confirmed that endogenous glycopeptide plays an important role in a variety of pathological and physiological processes. However, direct analysis of endogenous glycopeptide is still a great challenge owing to the low abundance of endogenous glycopeptides and the presence of a large number of interfering substances such as large-sized proteins and heteropeptides in complex biological sample. Herein, we reported a novel bowl-like mesoporous polydopamine nanoparticle modified by carrageenan (denoted as MPDA@PEI@CA) with strong hydrophilicity and size-exclusion effect for high specificity enrichment of endogenous glycopeptides. Thanks to the suitable pore channel structure as well as strong hydrophilic surface, the as-prepared MPDA@PEI@CA nanoparticles exhibited prominent performance in enrichment of N-linked glycopeptide with ultrahigh selectivity (1:5000 M ratio of horseradish peroxidase (HRP) digests/bovine serum albumin (BSA) digests), low detection limit (5 fmol μL-1), outstanding size-exclusion ability (1:1000 mass of HRP/BSA), and unique reusability (five times). 125 N-glycosylation sites of 134 glycopeptides from 65 glycoproteins were identified from 2 μL sample of human serum treated with the MPDA@PEI@CA nanoparticles, which manifested the ability to enrich endogenous N-linked glycopeptides from complex biological samples. These results indicated that the bowl-like MPDA@PEI@CA nanoparticles with novel structure prepared in this work had great potential for glycopeptidome analysis.
Collapse
Affiliation(s)
- Yuyan Yan
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China
| | - Renlu Han
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China.
| | - Yafei Hou
- Department of Microelectronic Science and Engineering, Ningbo University, Ningbo, 315211, PR China
| | - Huijun Zhang
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China
| | - Jiancheng Yu
- Faculty of Electrical Engineering and Computer Science, Ningbo University, Ningbo, 315211, PR China
| | - Wenqing Gao
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China
| | - Long Xu
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China
| | - Keqi Tang
- Zhejiang Provincial Key Laboratory of Advanced Mass Spectrometry and Molecular Analysis, PR China; Institute of Mass Spectrometry, School of Materials Science & Chemical Engineering, Ningbo University, Ningbo, 315211, PR China.
| |
Collapse
|
5
|
Zhong H, Li Y, Huang Y, Zhao R. Metal-organic frameworks as advanced materials for sample preparation of bioactive peptides. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2021; 13:862-873. [PMID: 33543184 DOI: 10.1039/d0ay02193h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Development of novel affinity materials and separation techniques is crucial for the progress of modern proteomics and peptidomics. Detection of peptides and proteins from complex matrices still remains a challenging task due to the highly complicated biological composition, low abundance of target molecules, and large dynamic range of proteins. As an emerging area of analytical science, metal-organic framework (MOF)-based separation of proteins and peptides is attracting growing interest. This minireview summarizes the recent advances in MOF-based affinity materials for the sample preparation of proteins and peptides. Some newly emerging MOF nanoreactors for the degradation of peptides and proteins are introduced. An update of MOF-based affinity materials for the isolation of glycopeptides, phosphopeptides and low-abundance endogenous peptides in the last two years is focused on. The separation mechanism is discussed along with the chemical structures of MOFs. Finally, the remaining challenges and future development of MOFs in analyzing peptides and proteins in complicated biological samples are discussed.
Collapse
Affiliation(s)
- Huifei Zhong
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Analytical Chemistry for Living Biosystems, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
| | | | | | | |
Collapse
|
6
|
Zhang Y, Fang C, Bao H, Yuan W, Lu H. Discover the
Post‐Translational
Modification Proteome Using Mass Spectrometry. CHINESE J CHEM 2021. [DOI: 10.1002/cjoc.202000515] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ying Zhang
- Shanghai Cancer Center and Institutes of Biomedical Sciences, Fudan University Shanghai 200032 China
- Department of Chemistry and NHC Key Laboratory of Glycoconjugates Research, Fudan University Shanghai 200032 China
| | - Caiyun Fang
- Department of Chemistry and NHC Key Laboratory of Glycoconjugates Research, Fudan University Shanghai 200032 China
| | - Huimin Bao
- Department of Chemistry and NHC Key Laboratory of Glycoconjugates Research, Fudan University Shanghai 200032 China
| | - Wenjuan Yuan
- Shanghai Cancer Center and Institutes of Biomedical Sciences, Fudan University Shanghai 200032 China
| | - Haojie Lu
- Shanghai Cancer Center and Institutes of Biomedical Sciences, Fudan University Shanghai 200032 China
- Department of Chemistry and NHC Key Laboratory of Glycoconjugates Research, Fudan University Shanghai 200032 China
| |
Collapse
|
7
|
Yang SS, Wang C, Yu X, Shang W, Chen DDY, Gu ZY. A hydrophilic two-dimensional titanium-based metal-organic framework nanosheets for specific enrichment of glycopeptides. Anal Chim Acta 2020; 1119:60-67. [DOI: 10.1016/j.aca.2020.04.056] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 04/17/2020] [Accepted: 04/25/2020] [Indexed: 11/29/2022]
|
8
|
|
9
|
Lu J, Luan J, Li Y, He X, Chen L, Zhang Y. Hydrophilic maltose-modified magnetic metal-organic framework for highly efficient enrichment of N-linked glycopeptides. J Chromatogr A 2020; 1615:460754. [DOI: 10.1016/j.chroma.2019.460754] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Revised: 11/26/2019] [Accepted: 11/29/2019] [Indexed: 01/09/2023]
|
10
|
Liu C, Tong YL, Yu XQ, Shen H, Zhu Z, Li Q, Chen S. MOF-Based Photonic Crystal Film toward Separation of Organic Dyes. ACS APPLIED MATERIALS & INTERFACES 2020; 12:2816-2825. [PMID: 31840979 DOI: 10.1021/acsami.9b18012] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Metal-organic framework (MOF)-directed photonic structure materials have inspired great attention for extended and enhanced functions. However, the direct construction of photonic crystals (PCs) with MOF particles as building blocks still remains a challenge. Herein, we designed and synthesized monodisperse polyamidoamine (PAMAM) dendrimer-modified zeolitic imidazolate framework (ZIF-8) particles (PAMAM@ZIF-8) via a postsynthetic method, rendering ZIF-8 with hydrophilicity. It was found that the PAMAM@ZIF-8 particles could directly assemble into a uniform photonic structure and effectively suppressed the coffee-ring effect, forming homogeneous PC films with different structural colors. A PC pattern with angle-dependent colors was also achieved, which might have potential applications in the field of anticounterfeiting printing. More importantly, by taking advantages of a membrane separation-assisted assembly process, a colorful and robust PC film was accomplished on the surface of reduced graphene oxide (rGO). The hierarchal PAMAM@ZIF-8/rGO film demonstrates a superior separation ability toward organic dye solutions, which enriches the function of PC materials. This work gives a new insight into the fabrication of MOF-based functional PC materials, which will extend the application of PCs in the high selective and effective separation field.
Collapse
Affiliation(s)
- Chang Liu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Yu-Long Tong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Xiao-Qing Yu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Haixia Shen
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Zhijie Zhu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Qing Li
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| | - Su Chen
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Chemical Engineering, Jiangsu Key Laboratory of Fine Chemicals and Functional Polymer Materials , Nanjing Tech University , No. 5 Xin Mofan Road , Nanjing 210009 , P. R. China
| |
Collapse
|
11
|
Progress in Monolithic Column-based Separation and Enrichment of Glycoproteins. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2020. [DOI: 10.1016/s1872-2040(19)61207-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
12
|
Wang M, Gao J, Zhao B, Thayumanavan S, Vachet RW. Efficient enrichment of glycopeptides by supramolecular nanoassemblies that use proximity-assisted covalent binding. Analyst 2019; 144:6321-6326. [PMID: 31552921 DOI: 10.1039/c9an01113g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Mass spectrometry (MS)-based analysis of glycoproteins and glycopeptides requires selective separation strategies to eliminate interferences from more abundant non-glycosylated biomolecules. In this work, we describe a two-phase liquid-liquid extraction method using supramolecular polymeric nanoassemblies that can selectively and efficiently enrich glycopeptides for enhanced MS detection. The polymeric nanoassemblies are made selective for glycopeptides via the incorporation of hydrazide functional groups that covalently bind to glycans. The enrichment efficiency is further enhanced via the incorporation of acidic functional groups that lead to a proximity-assisted catalysis of the hydrazide-glycan conjugation reaction. Our results further demonstrate the value of designer supramolecular nanomaterials for the selective enrichment of modified peptides from complicated mixtures.
Collapse
Affiliation(s)
- Meizhe Wang
- Department of Chemistry, University of Massachusetts, Amherst, Massachusetts 01003, USA.
| | | | | | | | | |
Collapse
|
13
|
Sun S, Hu Y, Ao M, Shah P, Chen J, Yang W, Jia X, Tian Y, Thomas S, Zhang H. N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping. Clin Proteomics 2019; 16:35. [PMID: 31516400 PMCID: PMC6731604 DOI: 10.1186/s12014-019-9254-0] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 08/14/2019] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND N-linked glycoprotein is a highly interesting class of proteins for clinical and biological research. The large-scale characterization of N-linked glycoproteins accomplished by mass spectrometry-based glycoproteomics has provided valuable insights into the interdependence of glycoprotein structure and protein function. However, these studies focused mainly on the analysis of specific sample type, and lack the integration of glycoproteomic data from different tissues, body fluids or cell types. METHODS In this study, we collected the human glycosite-containing peptides identified through their de-glycosylated forms by mass spectrometry from over 100 publications and unpublished datasets generated from our laboratory. A database resource termed N-GlycositeAtlas was created and further used for the distribution analyses of glycoproteins among different human cells, tissues and body fluids. Finally, a web interface of N-GlycositeAtlas was created to maximize the utility and value of the database. RESULTS The N-GlycositeAtlas database contains more than 30,000 glycosite-containing peptides (representing > 14,000 N-glycosylation sites) from more than 7200 N-glycoproteins from different biological sources including human-derived tissues, body fluids and cell lines from over 100 studies. CONCLUSIONS The entire human N-glycoproteome database as well as 22 sub-databases associated with individual tissues or body fluids can be downloaded from the N-GlycositeAtlas website at http://nglycositeatlas.biomarkercenter.org.
Collapse
Affiliation(s)
- Shisheng Sun
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
- College of Life Science, Northwest University, Xi’an, 710069 Shaanxi China
| | - Yingwei Hu
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Minghui Ao
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Punit Shah
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Jing Chen
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Weiming Yang
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Xingwang Jia
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Yuan Tian
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Stefani Thomas
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| | - Hui Zhang
- Department of Pathology, Johns Hopkins University, Baltimore, MD 21287 USA
| |
Collapse
|
14
|
Abstract
Glycosylation is one of the most ubiquitous and complex post-translational modifications (PTMs). It plays pivotal roles in various biological processes. Studies at the glycopeptide level are typically considered as a downstream work resulting from enzymatic digested glycoproteins. Less attention has been focused on glycosylated endogenous signaling peptides due to their low abundance, structural heterogeneity and the lack of enabling analytical tools. Here, protocols are presented to isolate and characterize glycosylated neuropeptides utilizing nanoflow liquid chromatography coupled with mass spectrometry (LC-MS). We first demonstrate how to extract neuropeptides from raw tissues and perform further separation/cleanup before MS analysis. Then we describe hybrid MS methods for glycosylated neuropeptide profiling and site-specific analysis. We also include recommendations for data analysis to identify glycosylated neuropeptides in crustaceans where a complete neuropeptide database is still lacking. Other strategies and future directions are discussed to provide readers with alternative approaches and further unravel biological complexity rendered by glycosylation.
Collapse
Affiliation(s)
- Yang Liu
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, United States
| | - Qinjingwen Cao
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, United States
| | - Lingjun Li
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, United States; School of Pharmacy, University of Wisconsin-Madison, Madison, WI, United States.
| |
Collapse
|
15
|
Chen Y, Sheng Q, Hong Y, Lan M. Hydrophilic Nanocomposite Functionalized by Carrageenan for the Specific Enrichment of Glycopeptides. Anal Chem 2019; 91:4047-4054. [DOI: 10.1021/acs.analchem.8b05578] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
|
16
|
Yu A, Zhao J, Peng W, Banazadeh A, Williamson SD, Goli M, Huang Y, Mechref Y. Advances in mass spectrometry-based glycoproteomics. Electrophoresis 2018; 39:3104-3122. [PMID: 30203847 PMCID: PMC6375712 DOI: 10.1002/elps.201800272] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Revised: 09/03/2018] [Accepted: 09/03/2018] [Indexed: 12/13/2022]
Abstract
Protein glycosylation, an important PTM, plays an essential role in a wide range of biological processes such as immune response, intercellular signaling, inflammation, and host-pathogen interaction. Aberrant glycosylation has been correlated with various diseases. However, studying protein glycosylation remains challenging because of low abundance, microheterogeneities of glycosylation sites, and poor ionization efficiency of glycopeptides. Therefore, the development of sensitive and accurate approaches to characterize protein glycosylation is crucial. The identification and characterization of protein glycosylation by MS is referred to as the field of glycoproteomics. Methods such as enrichment, metabolic labeling, and derivatization of glycopeptides in conjunction with different MS techniques and bioinformatics tools, have been developed to achieve an unequivocal quantitative and qualitative characterization of glycoproteins. This review summarizes the recent developments in the field of glycoproteomics over the past 6 years (2012 to 2018).
Collapse
Affiliation(s)
- Aiying Yu
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Jingfu Zhao
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Wenjing Peng
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Alireza Banazadeh
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Seth D. Williamson
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Mona Goli
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Yifan Huang
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Yehia Mechref
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| |
Collapse
|
17
|
Pu C, Zhao H, Hong Y, Zhan Q, Lan M. Elution-free ultra-sensitive enrichment for glycopeptides analyses: Using a degradable, post-modified Ce-metal-organic framework. Anal Chim Acta 2018; 1045:123-131. [PMID: 30454567 DOI: 10.1016/j.aca.2018.09.013] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Revised: 09/04/2018] [Accepted: 09/08/2018] [Indexed: 11/28/2022]
Abstract
In this work, we presented a facile elution-free method for ultrasensitive enrichment of glycopeptides using two kinds of novel Ce-metal-organic frameworks (Ce-MOF) post-modified with hyaluronic acid (Ce-MOF@HA) and glutamic acid (Ce-MOF@Glu). Both of the synthesized materials remained stable in the loading buffer to enrich glycopeptides selectively and degrade in the eluent to release captured glycopeptides. Due to the dissolution of materials, the elution step of the enrichment process is omitted, resulting in an extremely high sensitivity (detection limit, 0.5 fmol/μL). Meanwhile, Ce-MOF@HA and Ce-MOF@Glu also possessed excellent selectivity with molar ratios of IgG and BSA digests being 1:1000 and 1:500, respectively. Noticeably, the practical applicability of the obtained materials was inspected by analyzing the glycopeptides enriched from human serum (2 μL) by nano-LC-MS, in which 434 N-glycopeptides from 182 N-glycoproteins (by Ce-MOF@HA) and 328 N-glycopeptides from 135 N-glycoproteins (by Ce-MOF@Glu) were detected, respectively. This work provides a new method to simplify the process of glycopeptides enrichment and also paves a novel way for the enrichment of trace targets from complex matrices.
Collapse
Affiliation(s)
- Chenlu Pu
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Hongli Zhao
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, PR China.
| | - Yayun Hong
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Qiliang Zhan
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, PR China
| | - Minbo Lan
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, PR China; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, PR China.
| |
Collapse
|
18
|
Hydrophilic probe in mesoporous pore for selective enrichment of endogenous glycopeptides in biological samples. Anal Chim Acta 2018; 1024:84-92. [DOI: 10.1016/j.aca.2018.04.030] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 04/13/2018] [Accepted: 04/14/2018] [Indexed: 12/30/2022]
|
19
|
Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2013-2014. MASS SPECTROMETRY REVIEWS 2018; 37:353-491. [PMID: 29687922 DOI: 10.1002/mas.21530] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 11/29/2016] [Indexed: 06/08/2023]
Abstract
This review is the eighth update of the original article published in 1999 on the application of Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2014. Topics covered in the first part of the review include general aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, fragmentation, and arrays. The second part of the review is devoted to applications to various structural types such as oligo- and poly- saccharides, glycoproteins, glycolipids, glycosides, and biopharmaceuticals. Much of this material is presented in tabular form. The third part of the review covers medical and industrial applications of the technique, studies of enzyme reactions, and applications to chemical synthesis. © 2018 Wiley Periodicals, Inc. Mass Spec Rev 37:353-491, 2018.
Collapse
Affiliation(s)
- David J Harvey
- Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, United Kingdom
| |
Collapse
|
20
|
Li Y, Wang H, You X, Ma S, Dong J, Wei Y, Ou J, Ye M. Facile preparation of microporous organic polymers functionalized macroporous hydrophilic resin for selective enrichment of glycopeptides. Anal Chim Acta 2018; 1030:96-104. [PMID: 30032777 DOI: 10.1016/j.aca.2018.05.040] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2018] [Revised: 05/12/2018] [Accepted: 05/12/2018] [Indexed: 12/15/2022]
Abstract
A macroporous adsorption resin (MAR) with ∼10 μm diameter was synthesized by seed-swelling polymerization and further modified with a layer of microporous organic polymers (MOP) by "one-pot" solvothermal reaction. The resulting MAR@MOP exhibited high specific surface area of 131.3 m2/g, which was higher than that of pristine MAR (57.8 m2/g). The contact angle also decreased from 58.8° (MAR) to 24° (MAR@MOP), indicating that the MOP was successfully grafted onto the surface of MAR. The chemical composition of MAR@MOP was confirmed by Fourier-transform infrared spectroscopy, 13C NMR and element analysis. The enrichment efficiency of MAR@MOP to glycopeptides was demonstrated by trapping N-linked glycopeptides from tryptic digests of human immunoglobulin G (IgG), horseradish peroxidase (HRP) and bovine fetuin. Furthermore, 879 unique N-glycosylation sites in 811 unique glycopeptides sequence mapped to 516 N-glycosylated proteins were identified in three replicate analyses of proteins extracted from mouse liver. Therefore, this hydrophilic MOP-coated adsorbent would be applied in the enrichment and identification of low-abundance N-linked glycopeptides in complicated biological samples.
Collapse
Affiliation(s)
- Ya Li
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China; CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Hongwei Wang
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Xin You
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shujuan Ma
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China; CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Jing Dong
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Yinmao Wei
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China.
| | - Junjie Ou
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Mingliang Ye
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| |
Collapse
|
21
|
Bi C, Liang Y, Shen L, Tian S, Zhang K, Li Y, He X, Chen L, Zhang Y. Maltose-Functionalized Hydrophilic Magnetic Nanoparticles with Polymer Brushes for Highly Selective Enrichment of N-Linked Glycopeptides. ACS OMEGA 2018; 3:1572-1580. [PMID: 30023808 PMCID: PMC6044954 DOI: 10.1021/acsomega.7b01788] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Accepted: 01/24/2018] [Indexed: 05/15/2023]
Abstract
Efficient enrichment glycoproteins/glycopeptides from complex biological solutions are very important in the biomedical sciences, in particular biomarker research. In this work, the high hydrophilic polyethylenimine conjugated polymaltose polymer brushes functionalized magnetic Fe3O4 nanoparticles (NPs) denoted as Fe3O4-PEI-pMaltose were designed and synthesized via a simple two-step modification. The obtained superhydrophilic Fe3O4-PEI-pMaltose NPs displayed outstanding advantages in the enrichment of N-linked glycopeptides, including high selectivity (1:100, mass ratios of HRP and bovine serum albumin (BSA) digest), low detection limit (10 fmol), large binding capacity (200 mg/g), and high enrichment recovery (above 85%). The above-mentioned excellent performance of novel Fe3O4-PEI-pMaltose NPs was attributed to graft of maltose polymer brushes and efficient assembly strategy. Moreover, Fe3O4-PEI-pMaltose NPs were further utilized to selectively enrich glycopeptides from human renal mesangial cell (HRMC, 200 μg) tryptic digest, and 449 N-linked glycopeptides, representing 323 different glycoproteins and 476 glycosylation sites, were identified. It was expected that the as-synthesized Fe3O4-PEI-pMaltose NPs, possessing excellent performance (high binding capacity, good selectivity, low detection limit, high enrichment recovery, and easy magnetic separation) coupled to a facile preparation procedure, have a huge potential in N-glycosylation proteome analysis of complex biological samples.
Collapse
Affiliation(s)
- Changfen Bi
- Tianjin
Key Laboratory of Radiation Medicine and Molecular Nuclear Medicine,
Institute of Radiation Medicine, Peking
Union Medical College & Chinese Academy of Medical Sciences, Tianjin 300192, China
| | - Yulu Liang
- Research
Center for Analytical Sciences, College of Chemistry, Tianjin Key
Laboratory of Biosensing and Molecular Recognition, State Key Laboratory
of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China
- Collaborative Innovation
Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, China
| | - Lijin Shen
- 2011
Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Medical University, Tianjin 300070, China
| | - Shanshan Tian
- 2011
Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Medical University, Tianjin 300070, China
| | - Kai Zhang
- 2011
Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Medical University, Tianjin 300070, China
| | - Yiliang Li
- Tianjin
Key Laboratory of Radiation Medicine and Molecular Nuclear Medicine,
Institute of Radiation Medicine, Peking
Union Medical College & Chinese Academy of Medical Sciences, Tianjin 300192, China
| | - Xiwen He
- Research
Center for Analytical Sciences, College of Chemistry, Tianjin Key
Laboratory of Biosensing and Molecular Recognition, State Key Laboratory
of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China
| | - Langxing Chen
- Research
Center for Analytical Sciences, College of Chemistry, Tianjin Key
Laboratory of Biosensing and Molecular Recognition, State Key Laboratory
of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China
- Collaborative Innovation
Center of Chemical Science and Engineering (Tianjin), Tianjin 300071, China
| | - Yukui Zhang
- Research
Center for Analytical Sciences, College of Chemistry, Tianjin Key
Laboratory of Biosensing and Molecular Recognition, State Key Laboratory
of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China
- Dalian
Institute of Chemical Physics, Chinese Academy
of Sciences, Dalian 116023, China
| |
Collapse
|
22
|
Li T, Yu Z, Zhang L, Wang C, Deng S, Huo X, Tian X, Zhang B, Ma X. Highly selective and sensitive visualization and identification of glycoproteins using multi-functionalized soluble dendrimer. Anal Chim Acta 2017; 988:58-65. [PMID: 28916104 DOI: 10.1016/j.aca.2017.07.053] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Revised: 07/19/2017] [Accepted: 07/24/2017] [Indexed: 12/13/2022]
Abstract
Glycoproteins are the most important and complex group of posttranslational modifications known in proteins. Many clinical biomarkers and therapeutic targets in cancer are glycoproteins. However, the isolation of glyco-specific antibodies and their poor stability remains a significant challenge in analytical method and diagnostic development. In this work, for the first time, we present a technology for highly efficient and selective glycosylation analysis on membrane without the use of glyco-specific antibodies. This approach, termed Nanopoly-BAV, which uses polyamidoamine dendrimers multifunctionalized with boronic acid for specific binding to glycoproteins and with biotin groups for glycoproteins visualization. The Nanopoly-BAV confers femtomolar sensitivity, exceptional glycoprotein specificity and selectivity with as high as 100000 folds for glycoproteins over nonglycoproteins. This synthetic, robust and highly selective Nanopoly-BAV has a great potential to measure cell signaling events by clearly distinguishing actual glycosylation signals from protein expression changes with superior stability. This technique may provide a powerful tool to monitor cellular signaling pathways and discovering new signaling events.
Collapse
Affiliation(s)
- Tiantian Li
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Zhenlong Yu
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Liyuan Zhang
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China; Department of Biochemistry, Purdue University, West Lafayette, IN, 47907, USA.
| | - Chao Wang
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Sa Deng
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Xiaokui Huo
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Xiangge Tian
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Baojing Zhang
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China
| | - Xiaochi Ma
- Dalian Medical University, Lvshun South Road No 9, Dalian, 116044, China.
| |
Collapse
|
23
|
He XM, Liang XC, Chen X, Yuan BF, Zhou P, Zhang LN, Feng YQ. High Strength and Hydrophilic Chitosan Microspheres for the Selective Enrichment of N-Glycopeptides. Anal Chem 2017; 89:9712-9721. [DOI: 10.1021/acs.analchem.7b01283] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Xiao-Mei He
- Key
Laboratory of Analytical Chemistry for Biology and Medicine (Ministry
of Education), Department of Chemistry, Wuhan University, Wuhan 430072, P.R. China
| | - Xi-Chao Liang
- College
of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P.R. China
| | - Xi Chen
- Wuhan Institute of Biotechnology, Wuhan 430072, P.R. China
| | - Bi-Feng Yuan
- Key
Laboratory of Analytical Chemistry for Biology and Medicine (Ministry
of Education), Department of Chemistry, Wuhan University, Wuhan 430072, P.R. China
| | - Ping Zhou
- College
of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P.R. China
| | - Li-Na Zhang
- College
of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P.R. China
| | - Yu-Qi Feng
- Key
Laboratory of Analytical Chemistry for Biology and Medicine (Ministry
of Education), Department of Chemistry, Wuhan University, Wuhan 430072, P.R. China
| |
Collapse
|
24
|
Wang J, Yao J, Sun N, Deng C. Facile synthesis of thiol-polyethylene glycol functionalized magnetic titania nanomaterials for highly efficient enrichment of N-linked glycopeptides. J Chromatogr A 2017; 1512:1-8. [DOI: 10.1016/j.chroma.2017.07.020] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Revised: 07/05/2017] [Accepted: 07/06/2017] [Indexed: 12/12/2022]
|
25
|
Synthesis of hydrazide-functionalized hydrophilic polymer hybrid graphene oxide for highly efficient N -glycopeptide enrichment and identification by mass spectrometry. Talanta 2017; 171:124-131. [DOI: 10.1016/j.talanta.2017.04.076] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Revised: 04/27/2017] [Accepted: 04/30/2017] [Indexed: 01/01/2023]
|
26
|
Wang Y, Wang J, Gao M, Zhang X. Functional dual hydrophilic dendrimer-modified metal-organic framework for the selective enrichment of N-glycopeptides. Proteomics 2017; 17:e1700005. [PMID: 28390088 DOI: 10.1002/pmic.201700005] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Revised: 03/06/2017] [Accepted: 04/06/2017] [Indexed: 01/03/2023]
Abstract
Analysis of protein glycosylation remains a significant challenge due to the low abundance of glycoproteins or N-glycopeptides. Here we have synthesized an amino-functionalized metal-organic framework (MOF) MIL-101(Cr)-NH2 whose surface is grafted with a hydrophilic dendrimer poly(amidoamine) (PAMAM) for N-glycopeptide enrichment based on the hydrophilic interactions. The selected substrate MOF MIL-101(Cr) owns high surface area which provides nice support for peptide adsorption. In addition, the MOF displayed a good hydrophilic property after being modified with amino groups. Most importantly, the grafted hydrophilic dendrimer PAMAM was firstly applied in the postsynthetic modification of MOFs. And this functionalization route using macromolecular dendrimer opens a new perspective in MOFs design. Owing to its long dendritic chains and abundant amino groups, our material displayed dual hydrophilic property. In the enrichment of standard glycoprotein HRP digestion, the functional MOF material was shown to have low detection limit (1 fmol/μL) and good selectivity when the concentration of nonglycopeptides was 100 fold higher than the target N-glycopeptides. All the results proved that MIL-101(Cr)-NH2 @PAMAM has great potential in the glycoproteome analysis.
Collapse
Affiliation(s)
- Yanan Wang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai, P. R. China
| | - Jiaxi Wang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai, P. R. China
| | - Mingxia Gao
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai, P. R. China
| | - Xiangmin Zhang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai, P. R. China
| |
Collapse
|
27
|
Qing G, Lu Q, Xiong Y, Zhang L, Wang H, Li X, Liang X, Sun T. New Opportunities and Challenges of Smart Polymers in Post-Translational Modification Proteomics. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2017; 29:1604670. [PMID: 28112833 DOI: 10.1002/adma.201604670] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 11/13/2016] [Indexed: 06/06/2023]
Abstract
Protein post-translational modifications (PTMs), which denote covalent additions of various functional groups (e.g., phosphate, glycan, methyl, or ubiquitin) to proteins, significantly increase protein complexity and diversity. PTMs play crucial roles in the regulation of protein functions and numerous cellular processes. However, in a living organism, native PTM proteins are typically present at substoichiometric levels, considerably impeding mass-spectrometry-based analyses and identification. Over the past decade, the demand for in-depth PTM proteomics studies has spawned a variety of selective affinity materials capable of capturing trace amounts of PTM peptides from highly complex biosamples. However, novel design ideas or strategies are urgently required for fulfilling the increasingly complex and accurate requirements of PTM proteomics analysis, which can hardly be met by using conventional enrichment materials. Considering two typical types of protein PTMs, phosphorylation and glycosylation, an overview of polymeric enrichment materials is provided here, with an emphasis on the superiority of smart-polymer-based materials that can function in intelligent modes. Moreover, some smart separation materials are introduced to demonstrate the enticing prospects and the challenges of smart polymers applied in PTM proteomics.
Collapse
Affiliation(s)
- Guangyan Qing
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
| | - Qi Lu
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
| | - Yuting Xiong
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
| | - Lei Zhang
- Institute of Biomedical and Pharmaceutical Sciences, College of Bioengineering, Hubei University of Technology, 28 Nanli Road, Wuhan, 430068, P. R. China
| | - Hongxi Wang
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
| | - Xiuling Li
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China
| | - Xinmiao Liang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China
| | - Taolei Sun
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
- International School of Materials Science and Engineering, Wuhan University of Technology, 122 Luoshi Road, Wuhan, 430070, P. R. China
| |
Collapse
|
28
|
Titanium (IV) ion-modified covalent organic frameworks for specific enrichment of phosphopeptides. Talanta 2017; 166:133-140. [DOI: 10.1016/j.talanta.2017.01.043] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Revised: 01/10/2017] [Accepted: 01/13/2017] [Indexed: 12/24/2022]
|
29
|
Jiang L, Messing ME, Ye L. Temperature and pH Dual-Responsive Core-Brush Nanocomposite for Enrichment of Glycoproteins. ACS APPLIED MATERIALS & INTERFACES 2017; 9:8985-8995. [PMID: 28240025 DOI: 10.1021/acsami.6b15326] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
In this report, we present a novel modular approach to the immobilization of a high density of boronic acid ligands on thermoresponsive block copolymer brushes for effective enrichment of glycoproteins via their synergistic multiple covalent binding with the immobilized boronic acids. Specifically, a two-step, consecutive surface-initiated atom transfer radical polymerization (SI-ATRP) was employed to graft a flexible block copolymer brush, pNIPAm-b-pGMA, from an initiator-functionalized nanosilica surface, followed by postpolymerization modification of the pGMA moiety with sodium azide. Subsequently, an alkyne-tagged boronic acid (PCAPBA) was conjugated to the polymer brush via a Cu(I)-catalyzed azide-alkyne cycloaddition (CuAAC) click reaction, leading to a silica-supported polymeric hybrid material, Si@pNIPAm-b-pBA, with a potent glycol binding affinity. The obtained core-brush nanocomposite was systematically characterized with regard to particle size, morphology, organic content, brush density, and number of immobilized boronic acids. We also studied the characteristics of glycoprotein binding of the nanocomposite under different conditions. The nanocomposite showed high binding capacities for ovalbumin (OVA) (98.0 mg g-1) and horseradish peroxidase (HRP) (26.8 mg g-1) in a basic buffer (pH 9.0) at 20 °C. More importantly, by adjusting the pH and temperature, the binding capacities of the nanocomposite can be tuned, which is meaningful for the separation of biological molecules. In general, the synthetic approach developed for the fabrication of block copolymer brushes in the nanocomposite opened new opportunities for the design of more functional hybrid materials that will be useful in bioseparation and biomedical applications.
Collapse
Affiliation(s)
- Lingdong Jiang
- Division of Pure and Applied Biochemistry, Department of Chemistry, Lund University , Box 124, 221 00 Lund, Sweden
| | - Maria E Messing
- Division of Solid State Physics and NanoLund, Department of Physics, Lund University , Box 118, 221 00 Lund, Sweden
| | - Lei Ye
- Division of Pure and Applied Biochemistry, Department of Chemistry, Lund University , Box 124, 221 00 Lund, Sweden
| |
Collapse
|
30
|
Sajid MS, Jabeen F, Hussain D, Ashiq MN, Najam-ul-Haq M. Hydrazide-functionalized affinity on conventional support materials for glycopeptide enrichment. Anal Bioanal Chem 2017; 409:3135-3143. [DOI: 10.1007/s00216-017-0254-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2016] [Revised: 02/04/2017] [Accepted: 02/10/2017] [Indexed: 10/20/2022]
|
31
|
Wang H, Jiao F, Gao F, Huang J, Zhao Y, Shen Y, Zhang Y, Qian X. Facile synthesis of magnetic covalent organic frameworks for the hydrophilic enrichment of N-glycopeptides. J Mater Chem B 2017; 5:4052-4059. [DOI: 10.1039/c7tb00700k] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Magnetic covalent organic frameworks were synthesized as novel hydrophilic materials for specific enrichment of glycopeptides.
Collapse
Affiliation(s)
- Heping Wang
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Fenglong Jiao
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Fangyuan Gao
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Junjie Huang
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Yan Zhao
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Yehua Shen
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education
- College of Chemistry and Materials Science
- Northwest University
- Xi'an 710069
- China
| | - Yangjun Zhang
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| | - Xiaohong Qian
- State Key Laboratory of Proteomics
- National Center for Protein Science Beijing
- Beijing Institute of Radiation Medicine
- Beijing 102206
- China
| |
Collapse
|
32
|
Li J, Wang J, Ling Y, Chen Z, Gao M, Zhang X, Zhou Y. Unprecedented highly efficient capture of glycopeptides by Fe3O4@Mg-MOF-74 core–shell nanoparticles. Chem Commun (Camb) 2017; 53:4018-4021. [DOI: 10.1039/c7cc00447h] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The synthesized Fe3O4@Mg-MOF-74 core–shell nanoparticles show effective and selective enrichment of 441 N-glycosylation sites of 418 glycopeptides from 125 glycoproteins in 1 μL of human serum.
Collapse
Affiliation(s)
- Jie Li
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- Department of Chemistry
- Fudan University
- Shanghai
- China
| | - Jiaxi Wang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Yun Ling
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- Department of Chemistry
- Fudan University
- Shanghai
- China
| | - Zhenxia Chen
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- Department of Chemistry
- Fudan University
- Shanghai
- China
| | - Mingxia Gao
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Xiangmin Zhang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Yaming Zhou
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials
- Department of Chemistry
- Fudan University
- Shanghai
- China
| |
Collapse
|
33
|
Banazadeh A, Veillon L, Wooding KM, Zabet-Moghaddam M, Mechref Y. Recent advances in mass spectrometric analysis of glycoproteins. Electrophoresis 2016; 38:162-189. [PMID: 27757981 DOI: 10.1002/elps.201600357] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Revised: 09/23/2016] [Accepted: 09/24/2016] [Indexed: 12/13/2022]
Abstract
Glycosylation is one of the most common posttranslational modifications of proteins that plays essential roles in various biological processes, including protein folding, host-pathogen interaction, immune response, and inflammation and aberrant protein glycosylation is a well-known event in various disease states including cancer. As a result, it is critical to develop rapid and sensitive methods for the analysis of abnormal glycoproteins associated with diseases. Mass spectrometry (MS) in conjunction with different separation methods, such as capillary electrophoresis (CE), ion mobility (IM), and high performance liquid chromatography (HPLC) has become a popular tool for glycoprotein analysis, providing highly informative fragments for structural identification of glycoproteins. This review provides an overview of the developments and accomplishments in the field of glycomics and glycoproteomics reported between 2014 and 2016.
Collapse
Affiliation(s)
- Alireza Banazadeh
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Lucas Veillon
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Kerry M Wooding
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | | | - Yehia Mechref
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA.,Center for Biotechnology and Genomics, Texas Tech University, Lubbock, TX, USA
| |
Collapse
|
34
|
Wang J, Li J, Wang Y, Gao M, Zhang X, Yang P. Development of Versatile Metal-Organic Framework Functionalized Magnetic Graphene Core-Shell Biocomposite for Highly Specific Recognition of Glycopeptides. ACS APPLIED MATERIALS & INTERFACES 2016; 8:27482-27489. [PMID: 27681085 DOI: 10.1021/acsami.6b08218] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Protein N-glycosylation is a ubiquitous and important post-translational modification that has been involved in the development and progression of a series of human-related diseases. Until recently, the highly selective capturing of glycopeptides from complex biosamples was still significant and challenging work due to their changeable structures, ultralow abundance, and strong ion-suppressing effect. Here we first report the preparation and characterization of a novel, hydrophilic, porous biocomposite composed of magnetic graphene functionalized with metal-organic frameworks (MOFs) (MG@Zn-MOFs) able to recognize glycopeptides. Thanks to its strong magnetic responsiveness, large specific surface area, excellent biocompatibility, and unique size-exclusion effect, the MG@Zn-MOFs showed outstanding sensitivity and selectivity and good recyclability in glycopeptides analysis. More excitingly, in practical application, 517 N-glycopeptides within 151 unique glycoproteins were clearly identified from human serum (1 μL) treated with the MG@Zn-MOFs, which is the best result among published reports so far. All the results demonstrate the promising commercialized usage of the biocomposite for the enrichment of glycopeptides in complex samples through a convenient and efficient process. Furthermore, it is anticipated that our strategy may offer promising guidance to develop new biocomposites functionalized with bio-MOFs for glycoproteomic applications.
Collapse
Affiliation(s)
- Jiaxi Wang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| | - Jie Li
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| | - Yanan Wang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| | - Mingxia Gao
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| | - Xiangmin Zhang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| | - Pengyuan Yang
- Department of Chemistry and Institutes of Biomedical Sciences, Fudan University , Shanghai 200433, China
| |
Collapse
|
35
|
Wang Y, Wang J, Gao M, Zhang X. A novel carbon material with nanopores prepared using a metal-organic framework as precursor for highly selective enrichment of N-linked glycans. Anal Bioanal Chem 2016; 409:431-438. [PMID: 27485625 DOI: 10.1007/s00216-016-9796-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Revised: 07/07/2016] [Accepted: 07/14/2016] [Indexed: 12/28/2022]
Abstract
Protein glycosylation plays a key role in many biological processes. In this study, a novel carbon material with nanopores was prepared by carbonization of metal-organic framework (MOF) Mil-101(Cr). The parent MOF assembled from metal ions with bridging organic linkers had many fascinating properties, such as ultrahigh surface area, suitable nanopore structure, and especially a large amount of carbon after being calcined. Due to the strong interactions between carbon and glycans as well as the size-exclusion effect of pore against protein, the N-linked glycans from standard glycoprotein or complex human serum proteins could be identified with high efficiency. The simple synthesis method as well as good enrichment efficiency made this novel carbon material a promising tool for glycosylation research.
Collapse
Affiliation(s)
- Yanan Wang
- Department of Chemistry and Institute of Biomedical Sciences, Fudan University, Shanghai, 200433, China
| | - Jiaxi Wang
- Department of Chemistry and Institute of Biomedical Sciences, Fudan University, Shanghai, 200433, China
| | - Mingxia Gao
- Department of Chemistry and Institute of Biomedical Sciences, Fudan University, Shanghai, 200433, China.
| | - Xiangmin Zhang
- Department of Chemistry and Institute of Biomedical Sciences, Fudan University, Shanghai, 200433, China
| |
Collapse
|
36
|
Highly Selective Enrichment of Glycopeptides Based on Zwitterionically Functionalized Soluble Nanopolymers. Sci Rep 2016; 6:29776. [PMID: 27412817 PMCID: PMC4944192 DOI: 10.1038/srep29776] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Accepted: 06/23/2016] [Indexed: 01/11/2023] Open
Abstract
Efficient glycopeptides enrichment prior to mass spectrometry analysis is essential for glycoproteome study. ZIC-HILIC (zwitterionic hydrophilic interaction liquid chromatography) based glycopeptides enrichment approaches have been attracting more attention for several benefits like easy operating, high enrichment specificity and intact glycopeptide retained. In this study, Poly (amidoamine) dendrimer (PAMAM) was adopted for the synthesis of zwitterionically functionalized (ZICF) materials for glycopeptide enrichment. The multiple branched structure and good solubility of ZICF-PAMAM enables a sufficient interaction with glycopeptides. The ZICF-PAMAM combined with the FASP-mode enrichment strategy exhibits more superior performance compared with the existing methods. It has the minimum detectable concentration of femtomolar level and high recovery rate of over 90.01%, and can efficiently enrich glycopeptides from complex biological samples even for merely 0.1 μL human serum. The remarkable glycopeptides enrichment capacity of ZICF-PAMAM highlights the potential application in in-depth glycoproteome research, which may open up new opportunities for the development of glycoproteomics.
Collapse
|
37
|
Trbojević-Akmačić I, Vilaj M, Lauc G. High-throughput analysis of immunoglobulin G glycosylation. Expert Rev Proteomics 2016; 13:523-34. [DOI: 10.1080/14789450.2016.1174584] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
|
38
|
Liang Y, Wu C, Zhao Q, Wu Q, Jiang B, Weng Y, Liang Z, Zhang L, Zhang Y. Gold nanoparticles immobilized hydrophilic monoliths with variable functional modification for highly selective enrichment and on-line deglycosylation of glycopeptides. Anal Chim Acta 2015; 900:83-9. [DOI: 10.1016/j.aca.2015.10.024] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 10/09/2015] [Accepted: 10/17/2015] [Indexed: 01/15/2023]
|
39
|
Bai H, Fan C, Zhang W, Pan Y, Ma L, Ying W, Wang J, Deng Y, Qian X, Qin W. A pH-responsive soluble polymer-based homogeneous system for fast and highly efficient N-glycoprotein/glycopeptide enrichment and identification by mass spectrometry. Chem Sci 2015; 6:4234-4241. [PMID: 29218189 PMCID: PMC5707513 DOI: 10.1039/c5sc00396b] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2015] [Accepted: 04/21/2015] [Indexed: 12/24/2022] Open
Abstract
A homogeneous reaction system was developed for facile and highly efficient enrichment of biomolecules by exploiting the reversible self-assembly of a stimuli-responsive polymer.
Liquid phase homogeneous reactions using soluble polymer supports have found numerous applications in homogeneous catalysis and organic synthesis because of their advantages of no interface mass transfer limitation and a high conversion rate. However, their application in analytical separation is limited by the inefficient/inconvenient recovery of the target molecules from the extremely complex biological samples. Here, we report a stimuli-responsive polymer system for facile and efficient enrichment of trace amounts of biomolecules from complex biological samples. The soluble polymer supports provide a homogeneous reaction system with fast mass transfer and facilitate interactions between the supports and the target molecules. More importantly, the stimuli-responsive polymers exhibit reversible self-assembly and phase separation under pH variations, which leads to facial sample recovery with a high yield of the target biomolecules. The stimuli-responsive polymer is successfully applied to the enrichment of low abundant N-glycoproteins/glycopeptides, which play crucial roles in various key biological processes in mammals and are closely correlated with the occurrence, progression and metastasis of cancer. N-Glycoprotein is coupled to the stimuli-responsive polymer using the reported hydrazide chemistry with pre-oxidation of the oligosaccharide structure. Highly efficient enrichment of N-glycoproteins/N-glycopeptides with >95% conversion rate is achieved within 1 h, which is eight times faster than using solid/insoluble hydrazide enrichment materials. Mass spectrometry analysis achieves low femtomolar identification sensitivity and obtained 1317 N-glycopeptides corresponding to 458 N-glycoproteins in mouse brain, which is more than twice the amount obtained after enrichment using commercial solid/insoluble materials. These results demonstrate the capability of this “smart” polymer system to combine stimuli-responsive and target-enrichment moieties to achieve improved identification of key biological and disease related biomolecules.
Collapse
Affiliation(s)
- Haihong Bai
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ; .,School of Life Science and Technology , Beijing Institute of Technology , Beijing , China
| | - Chao Fan
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ;
| | - Wanjun Zhang
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ;
| | - Yiting Pan
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ; .,School of Life Science and Technology , Beijing Institute of Technology , Beijing , China
| | - Lin Ma
- Research Center for Analytical Sciences , College of Sciences , Northeastern University , Shenyang , China
| | - Wantao Ying
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ;
| | - Jianhua Wang
- Research Center for Analytical Sciences , College of Sciences , Northeastern University , Shenyang , China
| | - Yulin Deng
- School of Life Science and Technology , Beijing Institute of Technology , Beijing , China
| | - Xiaohong Qian
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ;
| | - Weijie Qin
- National Center for Protein Sciences Beijing , State Key Laboratory of Proteomics , Beijing Proteome Research Center , Tianjin Baodi Hospital , Beijing Institute of Radiation Medicine , China . ;
| |
Collapse
|
40
|
Zhang Y, Zhang C, Jiang H, Yang P, Lu H. Fishing the PTM proteome with chemical approaches using functional solid phases. Chem Soc Rev 2015; 44:8260-87. [DOI: 10.1039/c4cs00529e] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Currently available chemical approaches for the enrichment and separation of a PTM proteome using functional solid phases were reviewed.
Collapse
Affiliation(s)
- Ying Zhang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200032
- P. R. China
- Key Laboratory of Glycoconjugates Research Ministry of Public Health
| | - Cheng Zhang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200032
- P. R. China
| | - Hucong Jiang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200032
- P. R. China
| | - Pengyuan Yang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200032
- P. R. China
| | - Haojie Lu
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200032
- P. R. China
- Key Laboratory of Glycoconjugates Research Ministry of Public Health
| |
Collapse
|
41
|
Zhang Y, Yu M, Zhang C, Wang Y, Di Y, Wang C, Lu H. Highly specific enrichment of N-glycoproteome through a nonreductive amination reaction using Fe3O4@SiO2-aniline nanoparticles. Chem Commun (Camb) 2015; 51:5982-5. [DOI: 10.1039/c4cc10285a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
To highly efficient extract theN-glycoproteome, a novel solid-phase extraction method based on a nonreductive amination reaction was developed.
Collapse
Affiliation(s)
- Ying Zhang
- Shanghai Cancer Center and Department of Chemistry
- Shanghai 200032
- P. R. China
- Institutes of Biomedical Sciences and Key Laboratory of Glycoconjuates MOH
- Fudan University, Fudan University
| | - Meng Yu
- State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science
- Laboratory of Advanced Materials
- Fudan University
- Shanghai 200433
- P. R. China
| | - Cheng Zhang
- Shanghai Cancer Center and Department of Chemistry
- Shanghai 200032
- P. R. China
- Institutes of Biomedical Sciences and Key Laboratory of Glycoconjuates MOH
- Fudan University, Fudan University
| | - Yali Wang
- Shanghai Cancer Center and Department of Chemistry
- Shanghai 200032
- P. R. China
| | - Yi Di
- Institutes of Biomedical Sciences and Key Laboratory of Glycoconjuates MOH
- Fudan University, Fudan University
- Shanghai
- P. R. China
| | - Changchun Wang
- State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science
- Laboratory of Advanced Materials
- Fudan University
- Shanghai 200433
- P. R. China
| | - Haojie Lu
- Shanghai Cancer Center and Department of Chemistry
- Shanghai 200032
- P. R. China
- Institutes of Biomedical Sciences and Key Laboratory of Glycoconjuates MOH
- Fudan University, Fudan University
| |
Collapse
|
42
|
Li J, Wang F, Liu J, Xiong Z, Huang G, Wan H, Liu Z, Cheng K, Zou H. Functionalizing with glycopeptide dendrimers significantly enhances the hydrophilicity of the magnetic nanoparticles. Chem Commun (Camb) 2015; 51:4093-6. [DOI: 10.1039/c5cc00187k] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
A novel hybrid magnetic nanoparticle coated with glycopeptide dendrimers was synthesized and utilized for highly efficient N-glycopeptide enrichment.
Collapse
Affiliation(s)
- Jinan Li
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Fangjun Wang
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Jing Liu
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Zhichao Xiong
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Guang Huang
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Hao Wan
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Zheyi Liu
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Kai Cheng
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Hanfa Zou
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| |
Collapse
|
43
|
Wang Y, Wang J, Gao M, Zhang X. An ultra hydrophilic dendrimer-modified magnetic graphene with a polydopamine coating for the selective enrichment of glycopeptides. J Mater Chem B 2015; 3:8711-8716. [DOI: 10.1039/c5tb01684c] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A novel ultra hydrophilic dendrimer-modified magnetic graphene@polydopamine@poly(amidoamine) (magG@PDA@PAMAM) was synthesized for the efficient and selective enrichment of N-linked glycopeptides.
Collapse
Affiliation(s)
- Yanan Wang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Jiaxi Wang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Mingxia Gao
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| | - Xiangmin Zhang
- Department of Chemistry and Institutes of Biomedical Sciences
- Fudan University
- Shanghai 200433
- China
| |
Collapse
|
44
|
Pan Y, Ma C, Tong W, Fan C, Zhang Q, Zhang W, Tian F, Peng B, Qin W, Qian X. Preparation of Sequence-Controlled Triblock Copolymer-Grafted Silica Microparticles by Sequential-ATRP for Highly Efficient Glycopeptides Enrichment. Anal Chem 2014; 87:656-62. [DOI: 10.1021/ac5034215] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Yiting Pan
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
- Chemical
Engineering College, Beijing Institute of Petrochemical Technology, Beijing 102617, China
| | - Cheng Ma
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Wei Tong
- Tianjin
Key Laboratory for Prevention and Control of Occupational and Environmental
Hazards, Logistics College of CAPF, Tianjin 300162, China
| | - Chao Fan
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Qian Zhang
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Wanjun Zhang
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Fang Tian
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Bo Peng
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Weijie Qin
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| | - Xiaohong Qian
- National
Center for Protein Sciences Beijing, State Key Laboratory of Proteomics,
Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China
| |
Collapse
|
45
|
Li X, Liu H, Qing G, Wang S, Liang X. Efficient enrichment of glycopeptides using phenylboronic acid polymer brush modified silica microspheres. J Mater Chem B 2014; 2:2276-2281. [DOI: 10.1039/c4tb00130c] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Phenylboronic acid (PBA) polymer brush modified silica demonstrated high selectivity for glycopeptides attributed to the synergistic effect of polyvalent interactions, hydrogen binding and hydrophilic nature provided by the polymer brush.
Collapse
Affiliation(s)
- Xiuling Li
- Key Lab of Separation Science for Analytical Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Science
- Dalian 116023, P.R. China
| | - Hongliang Liu
- Beijing National Laboratory of Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing, P.R. China
| | - Guangyan Qing
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing
- Wuhan University of Technology
- Wuhan 430070, P.R. China
| | - Shutao Wang
- Beijing National Laboratory of Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing, P.R. China
| | - Xinmiao Liang
- Key Lab of Separation Science for Analytical Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Science
- Dalian 116023, P.R. China
| |
Collapse
|