1
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Welsh BA, Corrigan ME, Assaf E, Nauta K, Sebastianelli P, Jordan MJT, Fittschen C, Kable SH. Photophysical oxidation of HCHO produces HO 2 radicals. Nat Chem 2023; 15:1350-1357. [PMID: 37414879 DOI: 10.1038/s41557-023-01272-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Accepted: 06/07/2023] [Indexed: 07/08/2023]
Abstract
Formaldehyde, HCHO, is the highest-volume carbonyl in the atmosphere. It absorbs sunlight at wavelengths shorter than 330 nm and photolyses to form H and HCO radicals, which then react with O2 to form HO2. Here we show HCHO has an additional HO2 formation pathway. At photolysis energies below the energetic threshold for radical formation we directly detect HO2 at low pressures by cavity ring-down spectroscopy and indirectly detect HO2 at 1 bar by Fourier-transform infrared spectroscopy end-product analysis. Supported by electronic structure theory and master equation simulations, we attribute this HO2 to photophysical oxidation (PPO): photoexcited HCHO relaxes non-radiatively to the ground electronic state where the far-from-equilibrium, vibrationally activated HCHO molecules react with thermal O2. PPO is likely to be a general mechanism in tropospheric chemistry and, unlike photolysis, PPO will increase with increasing O2 pressure.
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Affiliation(s)
- Blair A Welsh
- School of Chemistry, University of New South Wales, Kensington, New South Wales, Australia
- Combustion Research Facility, Sandia National Laboratories, Livermore, CA, USA
| | - Maggie E Corrigan
- School of Chemistry, University of Sydney, Sydney, New South Wales, Australia
| | - Emmanuel Assaf
- Université Lille, CNRS, UMR 8522, PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, Lille, France
- Chemical Sciences Laboratory, National Oceanic and Atmospheric Administration, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | - Klaas Nauta
- School of Chemistry, University of New South Wales, Kensington, New South Wales, Australia
| | - Paolo Sebastianelli
- School of Chemistry, University of New South Wales, Kensington, New South Wales, Australia
- School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, Australia
| | - Meredith J T Jordan
- School of Chemistry, University of Sydney, Sydney, New South Wales, Australia.
| | - Christa Fittschen
- Université Lille, CNRS, UMR 8522, PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, Lille, France
| | - Scott H Kable
- School of Chemistry, University of New South Wales, Kensington, New South Wales, Australia.
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2
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Jahangiri S, Arrazola JM, Quesada N, Delgado A. Quantum algorithm for simulating molecular vibrational excitations. Phys Chem Chem Phys 2020; 22:25528-25537. [DOI: 10.1039/d0cp03593a] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We introduce a quantum algorithm for simulating molecular vibrational excitations during vibronic transitions. The algorithm is used to simulate vibrational excitations of pyrrole and butane during photochemical and mechanochemical excitations.
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3
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Nunes CM, Reva I, Fausto R. Conformational isomerizations triggered by vibrational excitation of second stretching overtones. Phys Chem Chem Phys 2019; 21:24993-25001. [PMID: 31710324 DOI: 10.1039/c9cp05070a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vibrational excitation using frequency-tunable IR laser light has been developed as a powerful tool for selective manipulation of molecular conformations. In this methodology, vibrational excitation has been typically applied to the first stretching overtones (∼80 kJ mol-1) but also to the fundamental modes (∼40 kJ mol-1). Here, we demonstrate that selective conformational isomerizations are also achieved using excitation to second stretching overtones (∼120 kJ mol-1). The extremely weak absorptions of the second stretching overtones of molecules isolated in low-temperature matrices were measured for the first time; here using three prototype molecules: hydroxyacetone (HA), glycolic acid (GAc) and glycolamide (GAm). Benchmarking of computed anharmonic IR spectra showed that the B3LYP/SNSD method provides the best agreement with experimental frequencies of the ν(OH), 2ν(OH) and 3ν(OH) modes for the studied molecules in argon matrices. Selective irradiation at the 3ν(OH) frequencies (9850-10 500 cm-1) of HA, GAc and GAm monomers in argon matrices at 15 K successfully triggers their conformational isomerization. These results open the door to extend control over conformations separated by higher barriers and to induce other transformations not energetically accessible by excitation to the fundamental or first stretching overtone modes.
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Affiliation(s)
- Cláudio M Nunes
- CQC, Department of Chemistry, University of Coimbra, 3004-535, Coimbra, Portugal.
| | - Igor Reva
- CQC, Department of Chemistry, University of Coimbra, 3004-535, Coimbra, Portugal.
| | - Rui Fausto
- CQC, Department of Chemistry, University of Coimbra, 3004-535, Coimbra, Portugal.
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4
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Complexes of Glycolic Acid with Nitrogen Isolated in Argon Matrices. II. Vibrational Overtone Excitations. Molecules 2019; 24:molecules24183245. [PMID: 31489896 PMCID: PMC6766840 DOI: 10.3390/molecules24183245] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 08/28/2019] [Accepted: 09/05/2019] [Indexed: 11/17/2022] Open
Abstract
Structural changes of glycolic acid (GA) complex with nitrogen induced by selective overtone excitation of the νOH mode were followed in argon matrices using FTIR spectroscopy. For the most stable SSC1 complex present in different trapping sites directly upon deposition site, selective changes in the νOH region were achieved upon near-infrared irradiation. Simultaneously, new conformers of the GA…N2 complex were formed, giving rise to several sets of bands in the νOH and νC=O regions of the spectra. Both position and intensity of new absorptions appeared to be highly sensitive on the wavelength of radiation used, as well as on the annealing of the matrix. Based on theoretical calculations at different levels of theory, an assignment of the observed bands is proposed and discussed.
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5
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Pastorczak M, Nejbauer M, Radzewicz C. Femtosecond infrared pump-stimulated Raman probe spectroscopy: the first application of the method to studies of vibrational relaxation pathways in the liquid HDO/D 2O system. Phys Chem Chem Phys 2019; 21:16895-16904. [PMID: 31215570 DOI: 10.1039/c9cp00855a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have proposed and constructed a setup for a novel method of ultrafast vibrational spectroscopy: femtosecond infrared pump-stimulated Raman probe spectroscopy. This is the first time-resolved spectroscopy providing simultaneously a sub-100 fs time resolution, a spectral resolution better than 10 cm-1 and a spectral window covering an extremely broad range of molecular vibrations (at least: 200-4000 cm-1) with a "single laser shot". The new method was applied to study vibrational relaxation pathways in the liquid HDO/D2O system. We determined the lifetimes of OH stretching vibrations to be in the range 310-500 fs depending on the isotopic dilution, which is in good agreement with the results from pump-probe femtosecond infrared spectroscopy. Moreover, we observed a strong coupling of OH stretch to OD stretch vibrations and possibly also to the librational modes of water.
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Affiliation(s)
- Marcin Pastorczak
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland and Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Michał Nejbauer
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland and Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Czesław Radzewicz
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
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6
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Sutradhar S, Samanta BR, Fernando R, Reisler H. Spectroscopy and Two-Photon Dissociation of Jet-Cooled Pyruvic Acid. J Phys Chem A 2019; 123:5906-5917. [DOI: 10.1021/acs.jpca.9b04166] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Subhasish Sutradhar
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Bibek R. Samanta
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Ravin Fernando
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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7
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Cyran JD, Backus EHG, van Zadel MJ, Bonn M. Comparative Adsorption of Acetone on Water and Ice Surfaces. Angew Chem Int Ed Engl 2019; 58:3620-3624. [PMID: 30601600 PMCID: PMC6767755 DOI: 10.1002/anie.201813517] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Indexed: 12/05/2022]
Abstract
Small organic molecules on ice and water surfaces are ubiquitous in nature and play a crucial role in many environmentally relevant processes. Herein, we combine surface‐specific vibrational spectroscopy and a controllable flow cell apparatus to investigate the molecular adsorption of acetone onto the basal plane of single‐crystalline hexagonal ice with a large surface area. By comparing the adsorption of acetone on the ice/air and the water/air interface, we observed two different types of acetone adsorption, as apparent from the different responses of both the free O−H and the hydrogen‐bonded network vibrations for ice and liquid water. Adsorption on ice occurs preferentially through interactions with the free OH group, while the interaction of acetone with the surface of liquid water appears less specific.
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Affiliation(s)
- Jenée D Cyran
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Ellen H G Backus
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany.,Department of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090, Vienna, Austria
| | - Marc-Jan van Zadel
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Mischa Bonn
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
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8
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Vergleichende Acetonadsorption an Wasser- und Eisoberflächen. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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9
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Meuwly M. Reactive molecular dynamics: From small molecules to proteins. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1386] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Markus Meuwly
- Department of Chemistry University of Basel Basel Switzerland
- Department of Chemistry Brown University Providence Rhode Island
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10
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El Hage K, Brickel S, Hermelin S, Gaulier G, Schmidt C, Bonacina L, van Keulen SC, Bhattacharyya S, Chergui M, Hamm P, Rothlisberger U, Wolf JP, Meuwly M. Implications of short time scale dynamics on long time processes. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2017; 4:061507. [PMID: 29308419 PMCID: PMC5741438 DOI: 10.1063/1.4996448] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 09/15/2017] [Indexed: 05/02/2023]
Abstract
This review provides a comprehensive overview of the structural dynamics in topical gas- and condensed-phase systems on multiple length and time scales. Starting from vibrationally induced dissociation of small molecules in the gas phase, the question of vibrational and internal energy redistribution through conformational dynamics is further developed by considering coupled electron/proton transfer in a model peptide over many orders of magnitude. The influence of the surrounding solvent is probed for electron transfer to the solvent in hydrated I-. Next, the dynamics of a modified PDZ domain over many time scales is analyzed following activation of a photoswitch. The hydration dynamics around halogenated amino acid side chains and their structural dynamics in proteins are relevant for iodinated TyrB26 insulin. Binding of nitric oxide to myoglobin is a process for which experimental and computational analyses have converged to a common view which connects rebinding time scales and the underlying dynamics. Finally, rhodopsin is a paradigmatic system for multiple length- and time-scale processes for which experimental and computational methods provide valuable insights into the functional dynamics. The systems discussed here highlight that for a comprehensive understanding of how structure, flexibility, energetics, and dynamics contribute to functional dynamics, experimental studies in multiple wavelength regions and computational studies including quantum, classical, and more coarse grained levels are required.
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Affiliation(s)
- Krystel El Hage
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
| | - Sebastian Brickel
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
| | - Sylvain Hermelin
- Department of Applied Physics (GAP), University of Geneva, 22 Ch. de Pinchat, 1211 Geneva 4, Switzerland
| | - Geoffrey Gaulier
- Department of Applied Physics (GAP), University of Geneva, 22 Ch. de Pinchat, 1211 Geneva 4, Switzerland
| | - Cédric Schmidt
- Department of Applied Physics (GAP), University of Geneva, 22 Ch. de Pinchat, 1211 Geneva 4, Switzerland
| | - Luigi Bonacina
- Department of Applied Physics (GAP), University of Geneva, 22 Ch. de Pinchat, 1211 Geneva 4, Switzerland
| | - Siri C van Keulen
- Institute of Chemical Sciences and Engineering, EPFL, Lausanne, Switzerland
| | | | - Majed Chergui
- Institute of Chemical Sciences and Engineering, EPFL, Lausanne, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich, Zurich, Switzerland
| | | | - Jean-Pierre Wolf
- Department of Applied Physics (GAP), University of Geneva, 22 Ch. de Pinchat, 1211 Geneva 4, Switzerland
| | - Markus Meuwly
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
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11
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Reed Harris AE, Cazaunau M, Gratien A, Pangui E, Doussin JF, Vaida V. Atmospheric Simulation Chamber Studies of the Gas-Phase Photolysis of Pyruvic Acid. J Phys Chem A 2017; 121:8348-8358. [DOI: 10.1021/acs.jpca.7b05139] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Allison E. Reed Harris
- Department
of Chemistry and Biochemistry, CIRES, University of Colorado, Boulder, Colorado 80309, United States
| | - Mathieu Cazaunau
- LISA,
UMR-CNRS 7583, Université Paris Est Créteil (UPEC), Université Paris Diderot (UPD), Institut Pierre Simon Laplace (IPSL), Créteil, France
| | - Aline Gratien
- LISA,
UMR-CNRS 7583, Université Paris Est Créteil (UPEC), Université Paris Diderot (UPD), Institut Pierre Simon Laplace (IPSL), Créteil, France
| | - Edouard Pangui
- LISA,
UMR-CNRS 7583, Université Paris Est Créteil (UPEC), Université Paris Diderot (UPD), Institut Pierre Simon Laplace (IPSL), Créteil, France
| | - Jean-François Doussin
- LISA,
UMR-CNRS 7583, Université Paris Est Créteil (UPEC), Université Paris Diderot (UPD), Institut Pierre Simon Laplace (IPSL), Créteil, France
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, CIRES, University of Colorado, Boulder, Colorado 80309, United States
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12
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Brickel S, Meuwly M. OH-Stretching Overtone Induced Dynamics in HSO3F from Reactive Molecular Dynamics Simulations. J Phys Chem A 2017; 121:5079-5087. [DOI: 10.1021/acs.jpca.7b02950] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sebastian Brickel
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
| | - Markus Meuwly
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
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13
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Intramolecular hydrogen-bonding effects on O H stretch overtone excitation for fluorinated hydroperoxides. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.03.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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14
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Lopes Jesus AJ, Fausto R, Reva I. Conformational Changes in 5-Methoxyindole: Effects of Thermal, Vibrational, and Electronic Excitations. J Phys Chem A 2017; 121:3372-3382. [DOI: 10.1021/acs.jpca.7b01713] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- A. J. Lopes Jesus
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- CQC,
Faculty of Pharmacy, University of Coimbra, 3004-295 Coimbra, Portugal
| | - R. Fausto
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - I. Reva
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
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15
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Ziemkiewicz MP, Pluetzer C, Wojcik M, Loreau J, van der Avoird A, Nesbitt DJ. Near infrared overtone (vOH = 2 ← 0) spectroscopy of Ne–H2O clusters. J Chem Phys 2017; 146:104204. [DOI: 10.1063/1.4977061] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Michael P. Ziemkiewicz
- JILA, National Institute of Standards and Technology, University of Colorado and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| | - Christian Pluetzer
- JILA, National Institute of Standards and Technology, University of Colorado and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| | - Michael Wojcik
- JILA, National Institute of Standards and Technology, University of Colorado and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
| | - Jérôme Loreau
- Service de Chimie Quantique et Photophysique, Université Libre de Bruxelles, 50 av. F.D. Roosevelt, CP 160/09, 1050 Brussels, Belgium
| | - Ad van der Avoird
- Theoretical Chemistry, Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - David J. Nesbitt
- JILA, National Institute of Standards and Technology, University of Colorado and Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA
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16
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Kumar M, Francisco JS. Red-Light Initiated Decomposition of α-Hydroxy Methylperoxy Radical in the Presence of Organic and Inorganic Acids: Implications for the HOx Formation in the Lower Stratosphere. J Phys Chem A 2016; 120:2677-83. [DOI: 10.1021/acs.jpca.6b01515] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Manoj Kumar
- Department of Chemistry, University of Nebraska—Lincoln, 639 North 12th Street, Lincoln, Nebraska 68588, United States
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska—Lincoln, 639 North 12th Street, Lincoln, Nebraska 68588, United States
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17
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Schnitzler EG, Badran C, Jäger W. Contrasting Effects of Water on the Barriers to Decarboxylation of Two Oxalic Acid Monohydrates: A Combined Rotational Spectroscopic and Ab Initio Study. J Phys Chem Lett 2016; 7:1143-1147. [PMID: 26963633 DOI: 10.1021/acs.jpclett.6b00278] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Using rotational spectroscopy, we have observed two isomers of the monohydrate of oxalic acid, the most abundant dicarboxylic acid in the atmosphere. In the lowest-energy isomer, water hydrogen-bonds to both carboxylic acid groups, and the barrier to decarboxylation decreases. In the second isomer, water bonds to only one carboxylic acid group, and the barrier increases. Though the lower barrier in the former is not unequivocal evidence that water acts as a photocatalyst, the higher barrier in the latter indicates that water acts as an inhibitor in this topology. Oxalic acid is unique among dicarboxylic acids: for the higher homologues calculated, the inhibiting topology of the monohydrate is lowest in energy and most abundant under atmospheric conditions. Consequently, oxalic acid is the only dicarboxylic acid for which single-water catalysis of overtone-induced decarboxylation in the atmosphere is plausible.
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Affiliation(s)
- Elijah G Schnitzler
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Courtenay Badran
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Wolfgang Jäger
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
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18
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Kumar M, Francisco JS. Red‐Light‐Induced Decomposition of an Organic Peroxy Radical: A New Source of the HO
2
Radical. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201509311] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Manoj Kumar
- Department of Chemistry, University of Nebraska‐Lincoln, Lincoln, NE 68588 (USA)
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska‐Lincoln, Lincoln, NE 68588 (USA)
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19
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Kumar M, Francisco JS. Red‐Light‐Induced Decomposition of an Organic Peroxy Radical: A New Source of the HO
2
Radical. Angew Chem Int Ed Engl 2015; 54:15711-4. [DOI: 10.1002/anie.201509311] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Indexed: 11/10/2022]
Affiliation(s)
- Manoj Kumar
- Department of Chemistry, University of Nebraska‐Lincoln, Lincoln, NE 68588 (USA)
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska‐Lincoln, Lincoln, NE 68588 (USA)
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20
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Lopes Jesus AJ, Reva I, Araujo-Andrade C, Fausto R. Conformational Switching by Vibrational Excitation of a Remote NH Bond. J Am Chem Soc 2015; 137:14240-3. [DOI: 10.1021/jacs.5b08588] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- António Jorge Lopes Jesus
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- CQC,
Faculty of Pharmacy, University of Coimbra, 3004-295 Coimbra, Portugal
| | - Igor Reva
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Cuauhtémoc Araujo-Andrade
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- Unidad Académica de Física de la Universidad Autónoma de Zacatecas, 98068 Zacatecas, Mexico
| | - Rui Fausto
- CQC,
Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
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21
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Bergmann K, Vitanov NV, Shore BW. Perspective: Stimulated Raman adiabatic passage: The status after 25 years. J Chem Phys 2015; 142:170901. [PMID: 25956078 DOI: 10.1063/1.4916903] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The first presentation of the STIRAP (stimulated Raman adiabatic passage) technique with proper theoretical foundation and convincing experimental data appeared 25 years ago, in the May 1st, 1990 issue of The Journal of Chemical Physics. By now, the STIRAP concept has been successfully applied in many different fields of physics, chemistry, and beyond. In this article, we comment briefly on the initial motivation of the work, namely, the study of reaction dynamics of vibrationally excited small molecules, and how this initial idea led to the documented success. We proceed by providing a brief discussion of the physics of STIRAP and how the method was developed over the years, before discussing a few examples from the amazingly wide range of applications which STIRAP now enjoys, with the aim to stimulate further use of the concept. Finally, we mention some promising future directions.
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Affiliation(s)
- Klaas Bergmann
- Fachbereich Physik und Forschungszentrum OPTIMAS, Technische Universität Kaiserslautern, Kaiserslautern, Germany
| | - Nikolay V Vitanov
- Department of Physics, St. Kliment Ohridski University of Sofia, James Bourchier 5 Blvd., 1164 Sofia, Bulgaria
| | - Bruce W Shore
- 618 Escondido Circle, Livermore, California 94550, USA
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22
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Yosa Reyes J, Nagy T, Meuwly M. Competitive reaction pathways in vibrationally induced photodissociation of H2SO4. Phys Chem Chem Phys 2015; 16:18533-44. [PMID: 25072517 DOI: 10.1039/c4cp01832j] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vibrationally induced photodissociation of sulfuric acid into H2O + SO3 is investigated based on reactive molecular dynamics (MD) simulations. Multisurface adiabatic reactive MD simulations allow us to follow both, H-transfer and water elimination after excitation of the ν9 OH-stretching mode. Analysis of several thousand trajectories finds that the H2O and SO3 fragments have distinct final state distributions with respect to translational, rotational, and vibrational degrees of freedom. Rotational distributions peak at quantum numbers j ≤ 5 for water and j ≈ 60 for SO3. The final state distributions should be useful in identifying products in forthcoming experiments. Based on the MD trajectories, a kinetic scheme has been developed which is able to explain most of the trajectory data and suggests that IVR is very rapid. Typical lifetimes of the excited complex range from several 10 picoseconds to hundreds of nanoseconds, depending on the excitation level. Including temperature and pressure profiles characteristic for the stratosphere in the kinetic model shows that excitations higher than ν9 = 4 can significantly contribute to the photolysis rate. This extends and specifies earlier work in that multi-level modeling is required to understand the significance of vibrationally induced decomposition pathways of sulfuric acid in the middle atmosphere.
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Affiliation(s)
- Juvenal Yosa Reyes
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland. m.meuwly-at-unibas.ch
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23
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Vereecken L, Glowacki DR, Pilling MJ. Theoretical Chemical Kinetics in Tropospheric Chemistry: Methodologies and Applications. Chem Rev 2015; 115:4063-114. [DOI: 10.1021/cr500488p] [Citation(s) in RCA: 146] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Luc Vereecken
- Max Planck Institute for Chemistry, 55128 Mainz, Germany
| | - David R. Glowacki
- PULSE
Institute and Department of Chemistry, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
- School
of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
- Department
of Computer Science, University of Bristol, Bristol BS8 1UB, United Kingdom
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24
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Begum S, Subramanian R. Bonding and spectroscopic properties of complexes of SO2–O2and SO2–N2and its atmospheric consequences. Phys Chem Chem Phys 2014; 16:17658-69. [DOI: 10.1039/c4cp01084a] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Reed Harris AE, Ervens B, Shoemaker RK, Kroll JA, Rapf RJ, Griffith EC, Monod A, Vaida V. Photochemical Kinetics of Pyruvic Acid in Aqueous Solution. J Phys Chem A 2014; 118:8505-16. [DOI: 10.1021/jp502186q] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Allison E. Reed Harris
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Barbara Ervens
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- Chemical
Sciences Division, Earth System Research Laboratory, National Oceanic and Atmospheric Administration, Boulder, Colorado 80305, United States
| | - Richard K. Shoemaker
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Jay A. Kroll
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Rebecca J. Rapf
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Elizabeth C. Griffith
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Anne Monod
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- Aix Marseille Université, CNRS, LCE FRE 3416, 13331 Marseille, France
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
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