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Xue Y, Sexton TM, Yang J, Tschumper GS. Systematic analysis of electronic barrier heights and widths for concerted proton transfer in cyclic hydrogen bonded clusters: (HF) n, (HCl) n and (H 2O) n where n = 3, 4, 5. Phys Chem Chem Phys 2024; 26:12483-12494. [PMID: 38619858 DOI: 10.1039/d4cp00422a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
The MP2 and CCSD(T) methods are paired with correlation consistent basis sets as large as aug-cc-pVQZ to optimize the structures of the cyclic minima for (HF)n, (HCl)n and (H2O)n where n = 3-5, as well as the corresponding transition states (TSs) for concerted proton transfer (CPT). MP2 and CCSD(T) harmonic vibrational frequencies confirm the nature of each minimum and TS. Both conventional and explicitly correlated CCSD(T) computations are employed to assess the electronic dissociation energies and barrier heights for CPT near the complete basis (CBS) limit for all 9 clusters. Results for (HF)n are consistent with prior studies identifying Cnh and Dnh point group symmetry for the minima and TSs, respectively. Our computations also confirm that CPT proceeds through Cs TS structures for the C1 minima of (H2O)3 and (H2O)5, whereas the process goes through a TS with D2d symmetry for the S4 global minimum of (H2O)4. This work corroborates earlier findings that the minima for (HCl)3, (HCl)4 and (HCl)5 have C3h, S4 and C1 point group symmetry, respectively, and that the Cnh structures are not minima for n = 4 and 5. Moreover, our computations show the TSs for CPT in (HCl)3, (HCl)4 and (HCl)5 have D3h, D2d, and C2 point group symmetry, respectively. At the CCSD(T) CBS limit, (HF)4 and (HF)5 have the smallest electronic barrier heights for CPT (≈15 kcal mol-1 for both), followed by the HF trimer (≈21 kcal mol-1). The barriers are appreciably higher for the other clusters (around 27 kcal mol-1 for (H2O)4 and (HCl)3; roughly 30 kcal mol-1 for (H2O)3, (H2O)5 and (HCl)4; up to 38 kcal mol-1 for (HCl)5). At the CBS limit, MP2 significantly underestimates the CCSD(T) barrier heights (e.g., by ca. 2, 4 and 7 kcal mol-1 for the pentamers of HF, H2O and HCl, respectively), whereas CCSD overestimates these barriers by roughly the same magnitude. Scaling the barrier heights and dissociation energies by the number of fragments in the cluster reveals strong linear relationships between the two quantities and with the magnitudes of the imaginary vibrational frequency for the TSs.
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Affiliation(s)
- Yuan Xue
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
| | - Thomas More Sexton
- School of Arts and Sciences, Chemistry University of Mary, Bismark, ND 58504, USA.
| | - Johnny Yang
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
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Felker PM, Bačić Z. Erratum: "Intermolecular vibrational states of HF trimer from rigorous nine-dimensional quantum calculations: Strong coupling between intermolecular bending and stretching vibrations and the importance of the three-body interactions" [J. Chem. Phys. 157, 194103 (2022)]. J Chem Phys 2022; 157:239902. [PMID: 36550034 DOI: 10.1063/5.0137134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Affiliation(s)
- Peter M Felker
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA
| | - Zlatko Bačić
- Department of Chemistry, New York University, New York, New York 10003, USA
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CHAWANANON S, Pirali O, Goubet M, ASSELIN P. Characterizing centrosymmetric two-ring PAHs using jet-cooled high resolution mid-infrared laser spectroscopy and anharmonic Quantum Chemical calculations. J Chem Phys 2022; 157:064301. [DOI: 10.1063/5.0096777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The presence of Polycyclic Aromatic Hydrocarbons (PAH) molecules in the interstellar medium, recently confirmed by the detection of cyano-naphthalenes, renews the interest of extensive spectroscopic and physical-chemistry studies about such large species. The present study reports the jet-cooled rovibrational IR study of three centrosymmetric two-ring PAH molecules, naphthalene (C10H8), [1,5] naphthyridine (C8H6N2) and biphenyl (C12H10) in the in-plane ring C-H bending (975-1035 cm-1) and C-C ring stretching (1580-1620 cm-1) regions. For the two most rigid PAHs, the accuracy of spectroscopic parameters derived in ground and several excited states (6 for naphthalene and 6 for [1,5] naphthyridine) has significantly improved the literature values. In addition, comparison between experiments and quantum chemical calculations confirms the predictive power of the corrected calculated rotational parameters. The more flexible structure of biphenyl makes particularly challenging the analysis of high resolution jet-cooled spectra of n19 and n23 modes recorded at about 1601 and 1013 cm-1 respectively. The presence of three torsional vibrations below 120 cm-1 together with small values of the rotational constants prevented us to determine the ground and v19=1 excited rotational constants independently. In the n23 band region, the presence of two bands rotationally resolved and separated by only 0.8 cm-1, raises the question of possible splittings due to a large amplitude motion, most probably the torsion of the aliphatic bond between the two phenyl rings.
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Patkar D, Ahirwar MB, Gadre SR, Deshmukh MM. Unusually Large Hydrogen-Bond Cooperativity in Hydrogen Fluoride Clusters, (HF) n, n = 3 to 8, Revealed by the Molecular Tailoring Approach. J Phys Chem A 2021; 125:8836-8845. [PMID: 34612647 DOI: 10.1021/acs.jpca.1c06478] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this work, our recently proposed molecular tailoring approach (MTA)-based method is employed for the evaluation of individual hydrogen-bond (HB) energies in linear (L) and cyclic (C) hydrogen fluoride clusters, (HF)n (n = 3 to 8). The estimated individual HB energies calculated at the MP2(full)/aug-cc-pVTZ level for the L-(HF)n are between 6.2 to 9.5 kcal/mol and those in the C-(HF)n lie between 7.9 to 11.4 kcal/mol. The zero-point energy corrections and basis set superposition corrections are found to be very small (less than 0.6 and 1.2 kcal/mol, respectively). The cooperativity contribution toward individual HBs is seen to fall between 1.0 to 4.8 kcal/mol and 3.2 to 6.9 kcal/mol for linear and cyclic clusters, respectively. Interestingly, the HB energies in dimers, cleaved from these clusters, lie in a narrow range (4.4 to 5.2 kcal/mol) suggesting that the large HB strength in (HF)n clusters is mainly due to the large cooperativity contribution, especially for n ≥ 5 (50 to 62% of the HBs energy). Furthermore, the HB energies in these clusters show a good qualitative correlation with geometrical parameters (H···F distance and F-H···F angles), stretching frequencies of F-H bonds, and electron density values at the (3, -1) bond critical points.
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Affiliation(s)
- Deepak Patkar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), Sagar, 470003, India
| | - Mini Bharati Ahirwar
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), Sagar, 470003, India
| | - Shridhar R Gadre
- Department of Scientific Computing, Modelling and Simulation, Savitribai Phule Pune University, Pune, 411 007, India
| | - Milind M Deshmukh
- Department of Chemistry, Dr. Harisingh Gour Vishwavidyalaya, (A Central University), Sagar, 470003, India
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Grein F. Additivity and non-additivity of dissociation energies in intermolecular interactions. Theoretical studies on (H 2) n, n = 2-8, (CO 2) n, n = 2-6 and (HF) n, n = 2-8. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1753839] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Friedrich Grein
- Department of Chemistry, University of New Brunswick, Fredericton, Canada
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Remya PR, Mishra BK, Ramachandran C, Sathyamurthy N. Effect of confinement on structure, energy and vibrational spectra of (HF) , n = 1–4. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.136670] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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8
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Io A, Kawatsu T, Tachikawa M. Quantum Stabilization of the Frustrated Hydrogen Bonding Structure in the Hydrogen Fluoride Trimer. J Phys Chem A 2019; 123:7950-7955. [PMID: 31441656 DOI: 10.1021/acs.jpca.9b04407] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We performed ab initio path integral molecular dynamics (PIMD) and molecular dynamics (MD) simulations to discuss the thermal and nuclear quantum effects on the stabilities of hydrogen bonding network in a hydrogen fluoride trimer (HF)3 cluster. By the conventional molecular orbital calculation, the (HF)3 cluster has an equilateral triangle shape, which has a frustration in the chemical structure of the hydrogen bonds, whereas the hydrogen bonding structure of a hydrogen fluoride dimer (HF)2 cluster is nearly perpendicular to the acceptor molecule. The ratio of the triangular structures with the three hydrogen bondings in the PIMD simulation is larger than that in the MD one, whereas nonhydrogen bonding conformations such as a dimerlike structure are often found in MD simulation. The nuclear quantum effect stabilizes the frustrated hydrogen bonding network of the triangular (HF)3 cluster.
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Affiliation(s)
- Aiko Io
- Computational Science Group, Analysis Research Department, Chemical Research Laboratories , Nissan Chemical Corporation , Tsuboi-nishi 2-10-1 , Funabashi , Chiba 274-8507 , Japan.,Graduate School of Nanobioscience , Yokohama City University , Seto 22-2 , Kanazawa-ku, Yokohama , Kanagawa 236-0027 , Japan
| | - Tsutomu Kawatsu
- Graduate School of Nanobioscience , Yokohama City University , Seto 22-2 , Kanazawa-ku, Yokohama , Kanagawa 236-0027 , Japan.,Computational Engineering Applications Unit, R&D Group, Head Office for Information Systems and Cybersecurity , RIKEN , 2-1 Hirosawa , Wako , Saitama 351-0198 , Japan
| | - Masanori Tachikawa
- Graduate School of Nanobioscience , Yokohama City University , Seto 22-2 , Kanazawa-ku, Yokohama , Kanagawa 236-0027 , Japan
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Tarakanova EG, Yukhnevich GV. Equilibrium Compositions of HF Solutions in N,N-Dimethylformamide. RUSS J INORG CHEM+ 2018. [DOI: 10.1134/s0036023618040216] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Alikhani ME, Manceron L. A Theoretical Study of HF-CH 3Cl and (HF) 2-CH 3Cl Complexes. J Phys Chem A 2017; 121:9663-9668. [DOI: 10.1021/acs.jpca.7b10405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mohammad Esmail Alikhani
- Université Pierre et Marie Curie, Sorbonne Universités, UMR 8233, CNRS, 4 Place Jussieu, case courrier 49, F-75252 Paris, Cedex 05, France
| | - Laurent Manceron
- Université Pierre et Marie Curie, Sorbonne Universités, UMR 8233, CNRS, 4 Place Jussieu, case courrier 49, F-75252 Paris, Cedex 05, France
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Zhan H, Hu Y, Wang P, Chen J. Molecular structures of gas-phase neutral morpholine and its monohydrated complexes: experimental and theoretical approaches. RSC Adv 2017. [DOI: 10.1039/c6ra26582k] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Morpholine (NH(CH2CH2)2O) is a typical six-membered aliphatic heterocyclic compound.
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Affiliation(s)
- Huaqi Zhan
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Yongjun Hu
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Pengchao Wang
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
| | - Jiaxin Chen
- MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science
- College of Biophotonics
- South China Normal University
- Guangzhou 510631
- P. R. China
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12
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Asselin P, Madebène B, Soulard P, Georges R, Goubet M, Huet TR, Pirali O, Zehnacker-Rentien A. Competition between inter- and intra-molecular hydrogen bonding: An infrared spectroscopic study of jet-cooled amino-ethanol and its dimer. J Chem Phys 2016; 145:224313. [DOI: 10.1063/1.4972016] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Pierre Asselin
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Bruno Madebène
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Pascale Soulard
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Robert Georges
- Institut de Physique de Rennes, Campus de Beaulieu, Bat 11C, UMR 6251, Université de Rennes 1-CNRS, 35042 Rennes Cedex, France
| | - Manuel Goubet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Thérèse R. Huet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Olivier Pirali
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
- Ligne AILES — Synchrotron SOLEIL, L’Orme des Merisiers, F-91192 Gif-sur-Yvette Cedex, France
| | - Anne Zehnacker-Rentien
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
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Herman M, Földes T, Didriche K, Lauzin C, Vanfleteren T. Overtone spectroscopy of molecular complexes containing small polyatomic molecules. INT REV PHYS CHEM 2016. [DOI: 10.1080/0144235x.2016.1171039] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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14
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Samanta AK, Wang Y, Mancini JS, Bowman JM, Reisler H. Energetics and Predissociation Dynamics of Small Water, HCl, and Mixed HCl–Water Clusters. Chem Rev 2016; 116:4913-36. [DOI: 10.1021/acs.chemrev.5b00506] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amit K. Samanta
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Yimin Wang
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - John S. Mancini
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department
of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Hanna Reisler
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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Rypkema HA, Sinha A, Francisco JS. Carboxylic Acid Catalyzed Hydration of Acetaldehyde. J Phys Chem A 2015; 119:4581-8. [DOI: 10.1021/jp510704j] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Heather A. Rypkema
- Department of Atmospheric, Oceanic, and Space Sciences, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Amitabha Sinha
- Department
of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States
| | - Joseph S. Francisco
- Department of Chemistry, H.C.
Brown Building, Purdue University, West Lafayette, Indiana 47906, United States
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