1
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Bortolus M, Kotynia A, Saielli G, Ruzza P, Di Valentin M, Carraro M, Brasuń J. Detailed investigation of the binding abilities of the heterodomain of a multiHis cyclopeptide toward Cu(II) ions. J Pept Sci 2024; 30:e3568. [PMID: 38317295 DOI: 10.1002/psc.3568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 12/28/2023] [Accepted: 01/06/2024] [Indexed: 02/07/2024]
Abstract
Cyclopeptides hold significant relevance in various fields of science and medicine, due to their unique structural properties and diverse biological activities. Cyclic peptides, characterized by intrinsically higher conformational order, exhibit remarkable stability and resistance to proteolytic degradation, making them attractive candidates for developing targeted drug delivery systems. The aim of this work is to elucidate the unique coordination properties of the multi-His cyclic peptide with c(HDHKHPHHKHHP) sequence (HDCP - heterodomain cyclopeptide). This peptide, indeed, is able to form homo- and hetero-dinuclear complexes in a wide pH range, being thus a good chelator for Cu(II) ions. Herein, we present the results of a combined study, involving potentiometric, spectroscopic (UV-Vis, CD, and EPR), and computational investigations, on its coordination properties. To better understand the interaction pattern with Cu(II) metal ions, two other peptides, each one bearing only one of the two binding domains of HDCP are also considered in this study: c(HDHKHPGGKGGP) = CP1, c(GKGGKPHHKHHP) = CP2, which share sequence fragments of HDCP and allow separate investigations of its coordination domains.
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Affiliation(s)
- Marco Bortolus
- Department of Chemical Sciences, University of Padova, Padova, Italy
| | - Aleksandra Kotynia
- Department of Basic Chemical Sciences, Wroclaw Medical University, Wroclaw, Poland
| | - Giacomo Saielli
- Department of Chemical Sciences, University of Padova, Padova, Italy
- Padova Unit, Institute on Membrane Technology of CNR, Padova, Italy
| | - Paolo Ruzza
- Padova Unit, Institute of Biomolecular Chemistry of CNR, Padova, Italy
| | | | - Mauro Carraro
- Department of Chemical Sciences, University of Padova, Padova, Italy
- Padova Unit, Institute on Membrane Technology of CNR, Padova, Italy
| | - Justyna Brasuń
- Department of Basic Chemical Sciences, Wroclaw Medical University, Wroclaw, Poland
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2
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Rola A, Palacios O, Capdevila M, Valensin D, Gumienna-Kontecka E, Potocki S. Histidine-Rich C-Terminal Tail of Mycobacterial GroEL1 and Its Copper Complex─The Impact of Point Mutations. Inorg Chem 2023; 62:6893-6908. [PMID: 37092705 PMCID: PMC10170517 DOI: 10.1021/acs.inorgchem.2c04486] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
Abstract
The mycobacterial histidine-rich GroEL1 protein differs significantly compared to the well-known methionine/glycine-rich GroEL chaperonin. It was predicted that mycobacterial GroEL1 can play a significant role in the metal homeostasis of Mycobacteria but not, as its analogue, in protein folding. In this paper, we present the properties of the GroEL1 His-rich C-terminus as a ligand for Cu(II) ions. We studied the stoichiometry, stability, and spectroscopic features of copper complexes of the eight model peptides: L1─Ac-DHDHHHGHAH, L2─Ac-DKPAKAEDHDHHHGHAH, and six mutants of L2 in the pH range of 2-11. We revealed the impact of adjacent residues to the His-rich fragment on the complex stability: the presence of Lys and Asp residues significantly increases the stability of the system. The impact of His mutations was also examined: surprisingly, the exchange of each single His to the Gln residue did not disrupt the ability of the ligand to provide three binding sites for Cu(II) ions. Despite the most possible preference of the Cu(II) ion for the His9-His13 residues (Ac-DKPAKAEDHDHHH-) of the model peptide, especially the His11 residue, the study shows that there is not only one possible binding mode for Cu(II). The significance of this phenomenon is very important for the GroEL1 function─if the single mutation occurs naturally, the protein would be still able to interact with the metal ion.
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Affiliation(s)
- Anna Rola
- Faculty of Chemistry, University of Wroclaw, 50-383 Wroclaw, Poland
| | - Oscar Palacios
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Spain
| | - Merce Capdevila
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Spain
| | - Daniela Valensin
- Department of Biotechnology, Chemistry and Pharmacy, University of Siena, Via A. Moro 2, 53100 Siena, Italy
| | | | - Sławomir Potocki
- Faculty of Chemistry, University of Wroclaw, 50-383 Wroclaw, Poland
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3
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Huo C, Ming T, Wu Y, Huan H, Qiu X, Lu C, Li Y, Zhang Z, Han J, Su X. Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin. Polymers (Basel) 2023; 15:1297. [PMID: 36904538 PMCID: PMC10007213 DOI: 10.3390/polym15051297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/28/2023] [Accepted: 03/01/2023] [Indexed: 03/08/2023] Open
Abstract
Ferritin with a highly symmetrical cage-like structure is not only key in the reversible storage of iron in efficient ferroxidase activity; it also provides unique coordination environments for the conjugation of heavy metal ions other than those associated with iron. However, research regarding the effect of these bound heavy metal ions on ferritin is scarce. In the present study, we prepared a marine invertebrate ferritin from Dendrorhynchus zhejiangensis (DzFer) and found that it could withstand extreme pH fluctuation. We then demonstrated its capacity to interact with Ag+ or Cu2+ ions using various biochemical and spectroscopic methods and X-ray crystallography. Structural and biochemical analyses revealed that both Ag+ and Cu2+ were able to bind to the DzFer cage via metal-coordination bonds and that their binding sites were mainly located inside the three-fold channel of DzFer. Furthermore, Ag+ was shown to have a higher selectivity for sulfur-containing amino acid residues and appeared to bind preferentially at the ferroxidase site of DzFer as compared with Cu2+. Thus, it is far more likely to inhibit the ferroxidase activity of DzFer. The results provide new insights into the effect of heavy metal ions on the iron-binding capacity of a marine invertebrate ferritin.
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Affiliation(s)
- Chunheng Huo
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Tinghong Ming
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Yan Wu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
- College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315832, China
| | - Hengshang Huan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
- College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315832, China
| | - Xiaoting Qiu
- College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315832, China
| | - Chenyang Lu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Ye Li
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Zhen Zhang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Jiaojiao Han
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
| | - Xiurong Su
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo University, Ningbo 315211, China
- School of Marine Science, Ningbo University, Ningbo 315832, China
- Key Laboratory of Aquacultural Biotechnology Ministry of Education, Ningbo University, Ningbo 315832, China
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4
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Marciniak A, Pacini L, Papini AM, Brasuń J. Bicyclopeptides: a new class of ligands for Cu(II) ions. Dalton Trans 2022; 51:13368-13375. [PMID: 35984441 DOI: 10.1039/d2dt01497a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
There is growing interest in bicyclic peptides among scientists. This group of compounds has more advantageous properties than monocyclic ligands and their application in medicine and biological sciences is possible. It is known that sometimes the presence of metal ions is crucial for the activity of peptides in biological systems, like in the case of oxytocin or vasopressin. Therefore, in this study, we performed a series of experiments with the new bicyclic peptide c(PKKHP-c(CFWKTC)-PKKH) (BCL) that was designed and synthesized by a fully automated induction-assisted solid phase synthesizer. We analyzed the coordination abilities of BCL relative to copper(II) ions. The new bicyclic peptide contains two histidine moieties, separated by proline residues, with two distinct sites for metal ion coordination. The obtained results showed that in all analyzed systems both mono- and dinuclear complexes are formed.
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Affiliation(s)
- Aleksandra Marciniak
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211A, 50-556 Wroclaw, Poland.
| | - Lorenzo Pacini
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry "Ugo Schiff", University of Florence, Via Della Lastruccia 13, 50019 Sesto Fiorentino, Italy. .,MoD&LS Laboratory, University of Florence, Centre of Competences RISE, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy
| | - Anna Maria Papini
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry "Ugo Schiff", University of Florence, Via Della Lastruccia 13, 50019 Sesto Fiorentino, Italy. .,MoD&LS Laboratory, University of Florence, Centre of Competences RISE, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Italy
| | - Justyna Brasuń
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211A, 50-556 Wroclaw, Poland.
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5
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Lesiów MK, Bieńko A, Sobańska K, Kowalik-Jankowska T, Rolka K, Łęgowska A, Ptaszyńska N. Cu(II) complexes with peptides from FomA protein containing -His-Xaa-Yaa-Zaa-His and -His-His-motifs. ROS generation and DNA degradation. J Inorg Biochem 2020; 212:111250. [PMID: 32920436 DOI: 10.1016/j.jinorgbio.2020.111250] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 08/23/2020] [Accepted: 08/29/2020] [Indexed: 12/28/2022]
Abstract
Mono- and dinuclear Cu(II) complexes with Ac-PTVHNEYH-NH2 (L1) and Ac-NHHTLND-NH2 (L2) peptides from FomA protein of Fusobacterium nucleatum were studied by potentiometry, spectroscopic methods (UV-Vis, CD, EPR) and MS technique. The dominant mononuclear complexes for L1 ligand are: CuHL (pH range 5.0-6.0) with 2N {2Nim}, CuH-2L (pH range 8.0-8.5) and CuH-3L species (above pH 9.0) with 4N {Nim, 3N-} coordination modes. The complexes: CuH-1L with 3N {2Nim, N-}, CuH-2L with 3N {Nim, 2N-} and CuH-3L with 4N {Nim, 3N-} binding sites are proposed for the L2 ligand. Probably in the CuH-2L complex for CuL2 system the second His residue in His-His sequence is bound to Cu(II) ion, while the first His residue may stabilize this complex by His-His and/or His-Cu(II) interactions. The dominant dinuclear Cu2L1 complexes in the pH range 6.5-10.5 are: the Cu2H-4L and Cu2H-6L species with 3N{Nim, 2N-}4N{Nim, 3N-} and 4N{Nim, 3N-}4N{Nim, 3N-} binding sites, respectively. In the case of the Cu2L2 complex in the pH range 7.2-10.5, the Cu2H-4L and Cu2H-7L species dominate with 2N{Nim, N-}4N{Nim, 3N-} and (Cu(OH)42-4N{Nim, 3N-}) coordination modes, respectively. The ability to generate reactive oxygen species (ROS) by uncomplexed Cu(II) ions, ligands and their complexes at pH 7.4 in the presence of hydrogen peroxide or ascorbic acid was studied. UV-Vis, luminescence, EPR spin trapping and gel electrophoresis methods were used. Both complexes produce higher level of ROS compared to those of their ligands. ROS produced by Cu(II) complexes are hydroxyl radical and singlet oxygen, which contribute to oxidative DNA cleavage.
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Affiliation(s)
| | - Alina Bieńko
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Kamila Sobańska
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland
| | | | - Krzysztof Rolka
- Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Anna Łęgowska
- Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Natalia Ptaszyńska
- Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
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6
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Kotynia A, Marciniak A, Brasuń J. The formation of di-copper (II) complexes with a hetero-site cyclopeptide–spectroscopic and potentiometric studies. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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7
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Caballero AB, Iranzo O, Hautier A, Sabaté R, Gamez P. Peptidic Scaffolds To Reduce the Interaction of Cu(II) Ions with β-Amyloid Protein. Inorg Chem 2019; 59:837-846. [DOI: 10.1021/acs.inorgchem.9b03099] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Ana B. Caballero
- Departament de Química Inorgànica i Orgànica, Facultat de Química, Universitat de Barcelona, Martí i Franquès, 1-11, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
| | - Olga Iranzo
- , CNRS, Centrale Marseille, Aix Marseille Université, iSm2, Marseille, France
| | - Alexandre Hautier
- , CNRS, Centrale Marseille, Aix Marseille Université, iSm2, Marseille, France
| | - Raimon Sabaté
- Departament de Fisicoquímica, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona, Avda. Joan XXIII 27-31, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
| | - Patrick Gamez
- Departament de Química Inorgànica i Orgànica, Facultat de Química, Universitat de Barcelona, Martí i Franquès, 1-11, 08028 Barcelona, Spain
- Institute of Nanoscience and Nanotechnology (IN2UB), Universitat de Barcelona, 08028 Barcelona, Spain
- Catalan Institution for Research and Advanced Studies, Passeig Lluís Companys 23, 08010 Barcelona, Spain
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8
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Garai A, Delangle P. Recent advances in uranyl binding in proteins thanks to biomimetic peptides. J Inorg Biochem 2019; 203:110936. [PMID: 31864150 DOI: 10.1016/j.jinorgbio.2019.110936] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2019] [Revised: 11/05/2019] [Accepted: 11/17/2019] [Indexed: 12/29/2022]
Abstract
Uranium is an element belonging to the actinide series. It is ubiquitous in rock, soil, and water. Uranium is found in the ecosystem due to mining and milling industrial activities and processing to nuclear fuel, but also to the extensive use of phosphate fertilizers. Understanding uranium binding in vivo is critical, first to deepen our knowledge of molecular events leading to chemical toxicity, but also to provide new mechanistic information useful for the development of efficient decorporation treatments to be applied in case of intoxication. The most stable form in physiological conditions is the uranyl cation (UO22+), in which uranium oxidation state is +VI. This short review presents uranyl coordination properties and chelation, and what is currently known about uranium binding to proteins. Although several target proteins have been identified, the UO22+ binding sites have barely been identified. Biomimetic approaches using model peptides are good options to shed light on high affinity uranyl binding sites in proteins. A strategy based on constrained cyclodecapeptides allowed recently to propose a tetraphosphate binding site for uranyl that provides an affinity similar to the one measured with the phosphoprotein osteopontin.
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Affiliation(s)
- Aditya Garai
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, SyMMES, F-38000 Grenoble, France
| | - Pascale Delangle
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, SyMMES, F-38000 Grenoble, France.
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9
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Laporte FA, Lebrun C, Vidaud C, Delangle P. Phosphate-Rich Biomimetic Peptides Shed Light on High-Affinity Hyperphosphorylated Uranyl Binding Sites in Phosphoproteins. Chemistry 2019; 25:8570-8578. [PMID: 30908736 DOI: 10.1002/chem.201900646] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Indexed: 12/31/2022]
Abstract
Some phosphoproteins such as osteopontin (OPN) have been identified as high-affinity uranyl targets. However, the binding sites required for interaction with uranyl and therefore involved in its toxicity have not been identified in the whole protein. The biomimetic approach proposed here aimed to decipher the nature of these sites and should help to understand the role of the multiple phosphorylations in UO2 2+ binding. Two hyperphosphorylated cyclic peptides, pS168 and pS1368 containing up to four phosphoserine (pSer) residues over the ten amino acids present in the sequences, were synthesized with all reactions performed in the solid phase, including post-phosphorylation. These β-sheet-structured peptides present four coordinating residues from four amino acid side chains pointing to the metal ion, either three pSer and one glutamate in pS168 or four pSer in pS1368 . Significantly, increasing the number of pSer residues up to four in the cyclodecapeptide scaffolds produced molecules with an affinity constant for UO2 2+ that is as large as that reported for osteopontin at physiological pH. The phosphate-rich pS1368 can thus be considered a relevant model of UO2 2+ coordination in this intrinsically disordered protein, which wraps around the metal ion to gather four phosphate groups in the UO2 2+ coordination sphere. These model hyperphosphorylated peptides are highly selective for UO2 2+ with respect to endogenous Ca2+ , which makes them good starting structures for selective UO2 2+ complexation.
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Affiliation(s)
- Fanny A Laporte
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Colette Lebrun
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Claude Vidaud
- CEA, Fundamental Research Division, Biosciences and Biotechnologies Institute of Aix-Marseille, 30207, Bagnols sur Céze, France
| | - Pascale Delangle
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
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10
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Hautier A, Carvalho T, Valensin D, Simaan AJ, Faure B, Mateus P, Delgado R, Iranzo O. The role of methylation in the copper(ii) coordination properties of a His-containing decapeptide. Dalton Trans 2019; 48:1859-1870. [DOI: 10.1039/c8dt05037f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
N-Methylation: a simple strategy to stabilize copper species lacking amidate coordination at neutral pH value.
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Affiliation(s)
| | | | - Daniela Valensin
- Dipartimento di Biotecnologie
- Chimica e Farmacia
- Università di Siena
- 53100 Siena
- Italy
| | | | - Bruno Faure
- Aix Marseille Univ
- CNRS
- Centrale Marseille
- iSm2
- Marseille
| | - Pedro Mateus
- Instituto de Tecnologia Química e Biológica António Xavier
- Universidade Nova de Lisboa
- 2780-157 Oeiras
- Portugal
| | - Rita Delgado
- Instituto de Tecnologia Química e Biológica António Xavier
- Universidade Nova de Lisboa
- 2780-157 Oeiras
- Portugal
| | - Olga Iranzo
- Aix Marseille Univ
- CNRS
- Centrale Marseille
- iSm2
- Marseille
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11
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12
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Kotynia A, Pap JS, Brasun J. The binding abilities of homodetic cyclic His-peptides toward copper ions. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2017.07.028] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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13
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Mesterházy E, Lebrun C, Jancsó A, Delangle P. A Constrained Tetrapeptide as a Model of Cu(I) Binding Sites Involving Cu4S6 Clusters in Proteins. Inorg Chem 2018; 57:5723-5731. [DOI: 10.1021/acs.inorgchem.7b02735] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Edit Mesterházy
- INAC, SYMMES, Université Grenoble Alpes, CEA, CNRS, F-38000 Grenoble, France
- Department of Inorganic and Analytical Chemistry, University of Szeged, Dóm tér 7, Szeged H-6720, Hungary
| | - Colette Lebrun
- INAC, SYMMES, Université Grenoble Alpes, CEA, CNRS, F-38000 Grenoble, France
| | - Attila Jancsó
- Department of Inorganic and Analytical Chemistry, University of Szeged, Dóm tér 7, Szeged H-6720, Hungary
| | - Pascale Delangle
- INAC, SYMMES, Université Grenoble Alpes, CEA, CNRS, F-38000 Grenoble, France
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14
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Conte-Daban A, Boff B, Candido Matias A, Aparicio CNM, Gateau C, Lebrun C, Cerchiaro G, Kieffer I, Sayen S, Guillon E, Delangle P, Hureau C. A Trishistidine Pseudopeptide with Ability to Remove Both Cu Ι and Cu ΙΙ from the Amyloid-β Peptide and to Stop the Associated ROS Formation. Chemistry 2017; 23:17078-17088. [PMID: 28846165 PMCID: PMC5714062 DOI: 10.1002/chem.201703429] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Indexed: 01/08/2023]
Abstract
The pseudopeptide L, derived from a nitrilotriacetic acid scaffold and functionalized with three histidine moieties, is reminiscent of the amino acid side chains encountered in the Alzheimer's peptide (Aβ). Its synthesis and coordination properties for CuΙ and CuΙΙ are described. L efficiently complex CuΙΙ in a square-planar geometry involving three imidazole nitrogen atoms and an amidate-Cu bond. By contrast, CuΙ is coordinated in a tetrahedral environment. The redox behavior is irreversible and follows an ECEC mechanism in accordance with the very different environments of the two redox states of the Cu center. This is in line with the observed resistance of the CuΙ complex to oxidation by oxygen and the CuΙΙ complex reduction by ascorbate. The affinities of L for CuΙΙ and CuΙ at physiological pH are larger than that reported for the Aβ peptide. Therefore, due to its peculiar Cu coordination properties, the ligand L is able to target both redox states of Cu, redox silence them and prevent reactive oxygen species production by the CuAβ complex. Because reactive oxygen species contribute to the oxidative stress, a key issue in Alzheimer's disease, this ligand thus represents a new strategy in the long route of finding molecular concepts for fighting Alzheimer's disease.
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Affiliation(s)
- A. Conte-Daban
- CNRS, LCC (Laboratoire de Chimie de Coordination) 205 route de Narbonne,BP 44099 31077 Toulouse Cedex 4, France
- University of Toulouse, UPS, INPT 31077 Toulouse Cedex 4, France
| | - B. Boff
- Univ. Grenoble Alpes, CEA, CNRS, INAC, SyMMES (UMR 5819), CIBEST, 17 rue des martyrs, F-38 000 Grenoble, France
| | - A. Candido Matias
- Univ. Grenoble Alpes, CEA, CNRS, INAC, SyMMES (UMR 5819), CIBEST, 17 rue des martyrs, F-38 000 Grenoble, France
- Center for Natural Sciences and Humanities, Federal University of ABC – UFABC 09210-580, Santo André, SP, Brazil
| | - C. N. Montes Aparicio
- CNRS, LCC (Laboratoire de Chimie de Coordination) 205 route de Narbonne,BP 44099 31077 Toulouse Cedex 4, France
- University of Toulouse, UPS, INPT 31077 Toulouse Cedex 4, France
| | - C. Gateau
- Univ. Grenoble Alpes, CEA, CNRS, INAC, SyMMES (UMR 5819), CIBEST, 17 rue des martyrs, F-38 000 Grenoble, France
| | - C. Lebrun
- Univ. Grenoble Alpes, CEA, CNRS, INAC, SyMMES (UMR 5819), CIBEST, 17 rue des martyrs, F-38 000 Grenoble, France
| | - G. Cerchiaro
- Center for Natural Sciences and Humanities, Federal University of ABC – UFABC 09210-580, Santo André, SP, Brazil
| | - I. Kieffer
- BM30B/FAME beamline, ESRF, F-38043 Grenoble cedex 9, France
- Observatoire des Sciences de l’Univers de Grenoble, UMS 832 CNRS Université Grenoble Alpes, F-38041 Grenoble, France
| | - S. Sayen
- Institut de Chimie Moléculaire de Reims (ICMR, UMR CNRS 7312), Université de Reims Champagne-Ardenne, F-51687 Reims Cedex 2, France
| | - E. Guillon
- Institut de Chimie Moléculaire de Reims (ICMR, UMR CNRS 7312), Université de Reims Champagne-Ardenne, F-51687 Reims Cedex 2, France
| | - P. Delangle
- Univ. Grenoble Alpes, CEA, CNRS, INAC, SyMMES (UMR 5819), CIBEST, 17 rue des martyrs, F-38 000 Grenoble, France
| | - C. Hureau
- CNRS, LCC (Laboratoire de Chimie de Coordination) 205 route de Narbonne,BP 44099 31077 Toulouse Cedex 4, France
- University of Toulouse, UPS, INPT 31077 Toulouse Cedex 4, France
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15
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Silvestri AP, Cistrone PA, Dawson PE. Adapting the Glaser Reaction for Bioconjugation: Robust Access to Structurally Simple, Rigid Linkers. Angew Chem Int Ed Engl 2017; 56:10438-10442. [PMID: 28685936 PMCID: PMC5708120 DOI: 10.1002/anie.201705065] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Indexed: 12/26/2022]
Abstract
Copper-mediated coupling between alkynes to generate a structurally rigid, linear 1,3-diyne linkage has been known for over a century. However, the mechanistic requirement to simultaneously maintain CuI and an oxidant has limited its practical utility, especially for complex functional molecules in aqueous solution. We find that addition of a specific bpy-diol ligand protects unprotected peptides from CuII -mediated oxidative damage through the formation of an insoluble CuII gel which solves the critical challenge of applying Glaser coupling to substrates that are degraded by CuII . The generality of this method is illustrated through the conjugation of a series of polar and nonpolar labels onto a fully unprotected GLP-1R agonist through a linear 7 Å diynyl linker.
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Affiliation(s)
- Anthony P Silvestri
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Philip A Cistrone
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Philip E Dawson
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA
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16
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Silvestri AP, Cistrone PA, Dawson PE. Adapting the Glaser Reaction for Bioconjugation: Robust Access to Structurally Simple, Rigid Linkers. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201705065] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Anthony P. Silvestri
- Department of Chemistry; The Scripps Research Institute; 10550 North Torrey Pines Road La Jolla CA 92037 USA
| | - Philip A. Cistrone
- Department of Chemistry; The Scripps Research Institute; 10550 North Torrey Pines Road La Jolla CA 92037 USA
| | - Philip E. Dawson
- Department of Chemistry; The Scripps Research Institute; 10550 North Torrey Pines Road La Jolla CA 92037 USA
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17
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Starck M, Laporte FA, Oros S, Sisommay N, Gathu V, Solari PL, Creff G, Roques J, Den Auwer C, Lebrun C, Delangle P. Cyclic Phosphopeptides to Rationalize the Role of Phosphoamino Acids in Uranyl Binding to Biological Targets. Chemistry 2017; 23:5281-5290. [PMID: 28164389 DOI: 10.1002/chem.201605481] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Indexed: 12/24/2022]
Abstract
The specific molecular interactions responsible for uranium toxicity are not yet understood. The uranyl binding sites in high-affinity target proteins have not been identified yet and the involvement of phosphoamino acids is still an important question. Short cyclic peptide sequences, with three glutamic acids and one phosphoamino acid, are used as simple models to mimic metal binding sites in phosphoproteins and to help understand the mechanisms involved in uranium toxicity. A combination of peptide design and synthesis, analytical chemistry, extended X-ray absorption fine structure (EXAFS) spectroscopy, and DFT calculations demonstrates the involvement of the phosphate group in the uranyl coordination sphere together with the three carboxylates of the glutamate moieties. The affinity constants measured with a reliable analytical competitive approach at physiological pH are significantly enhanced owing to the presence of the phosphorous moiety. These findings corroborate the importance of phosphoamino acids in uranyl binding in proteins and the relevance of considering phosphoproteins as potential uranyl targets in vivo.
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Affiliation(s)
- Matthieu Starck
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Fanny A Laporte
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Stephane Oros
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Nathalie Sisommay
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Vicky Gathu
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Pier Lorenzo Solari
- Synchrotron SOLEIL, L'orme des Merisiers, Saint-Aubin, 91192, Gif-sur-Yvette, France
| | - Gaëlle Creff
- Institut de Chimie de Nice, UMR7272, Université Côte d'Azur, 06108, Nice, France
| | - Jérôme Roques
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3, Univ. Paris-Sud, Université Paris-Saclay, France
| | - Christophe Den Auwer
- Institut de Chimie de Nice, UMR7272, Université Côte d'Azur, 06108, Nice, France
| | - Colette Lebrun
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Pascale Delangle
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
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18
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Kotynia A, Janek T, Czyżnikowska Ż, Bielińska S, Kamysz W, Brasuń J. The Analysis of Cu(II)/Zn(II) Cyclopeptide System as Potential Cu,ZnSOD Mimic Center. Int J Pept Res Ther 2017; 23:431-439. [PMID: 29170621 PMCID: PMC5681615 DOI: 10.1007/s10989-017-9574-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/03/2017] [Indexed: 01/24/2023]
Abstract
In this paper are presented the features of copper (II) and zinc (II) heteronuclear complexes of the cyclic peptide—c(HKHGPG)2. The coordination properties of ligand were studied by potentiometric, UV–Vis and CD spectroscopic methods. These experiments were carried out in aqueous solutions at 298 K depending on pH. It turned out that in a physiological pH dominates Cu(II)/Zn(II) complex ([CuZnL]4+) which could mimic the active center of superoxide dismutase (Cu,ZnSOD). In next step we performed in vitro research on Cu,ZnSOD activity for [CuZnL]4+ complex existing in 7.4 pH by the method of reduction of nitroblue tetrazolium (NBT). Also mono- and di-nuclear copper (II) complexes of this ligand were examined. The ability of inhibition free radical reaction were compared for all complexes. The results of these studies show that Cu(II) mono-, di-nuclear and Cu(II)/Zn(II) complexes becoming to new promising synthetic superoxide dismutase mimetics, and should be considered for further biological assays.
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Affiliation(s)
- Aleksandra Kotynia
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211a, 50-552 Wroclaw, Poland
| | - Tomasz Janek
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211a, 50-552 Wroclaw, Poland
| | - Żaneta Czyżnikowska
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211a, 50-552 Wroclaw, Poland
| | - Sylwia Bielińska
- Department of Inorganic Chemistry, Medical University of Gdansk, 80-416 Gdansk, Poland
| | - Wojciech Kamysz
- Department of Inorganic Chemistry, Medical University of Gdansk, 80-416 Gdansk, Poland
| | - Justyna Brasuń
- Department of Inorganic Chemistry, Wroclaw Medical University, Borowska 211a, 50-552 Wroclaw, Poland
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19
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Engineering Short Preorganized Peptide Sequences for Metal Ion Coordination: Copper(II) a Case Study. Methods Enzymol 2016. [PMID: 27586340 DOI: 10.1016/bs.mie.2016.04.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Peptides are multidentate chiral ligands capable of coordinating different metal ions. Nowadays, they can be obtained with high yield and purity, thanks to the advances on peptide/protein chemistry as well as in equipment (peptide synthesizers). Based on the identity and length of their amino acid sequences, peptides can present different degrees of flexibility and folding. Although short peptide sequences (<20 amino acids) usually lack structure in solution, different levels of structural preorganization can be induced by introducing conformational constraints, such as β-turn/loop template sequences and backbone cyclization. For all these reasons, and the fact that one is not restricted to use proteinogenic amino acids, small peptidic scaffolds constitute a simple and versatile platform for the development of inorganic systems with tailor-made properties and functions. Here we outline a general approach to the design of short preorganized peptide sequences (10-16 amino acids) for metal ion coordination. Based on our experience, we present a general scheme for the design, synthesis, and characterization of these peptidic scaffolds and provide protocols for the study of their metal ion coordination properties.
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20
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Campos SRR, Iranzo O, Baptista AM. Constant-pH MD Simulations Portray the Protonation and Structural Behavior of Four Decapeptides Designed to Coordinate Cu(2+). J Phys Chem B 2016; 120:1080-91. [PMID: 26813109 DOI: 10.1021/acs.jpcb.5b12052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The cyclic decapeptide C-Asp, containing one Asp residue and three His residues, was designed by Fragoso et al. (Chem. Eur. J. 2013, 19, 2076) to bind Cu(2+) exclusively through the side chain groups and mimic copper coordination in metalloproteins. A variant of the cyclodecapeptide where Asp is substituted by Asn (C-Asn) has also been synthesized in addition to the linear ("open") counterparts of both forms (O-Asp and O-Asn), testing the importance of cyclization and the presence of Asp in Cu(2+) coordination (Chem. Eur. J. 2013, 19, 2076; Dalton Trans. 2013, 42, 6182). All peptides formed a major species at neutral pH that was able to coordinate Cu(2+) exclusively through the neutral imidazole groups and the Asp side chain, when present, with C-Asp being the most effective. A detailed description of the protonation behavior of each histidine could help understanding the coordination species being formed in the pH range and eventually further optimizing the peptide's design. However, the standard current methods (NMR titrations) are not very suited for proximal groups titrating in the same pH range. In this work, we used the stochastic titration constant-pH molecular dynamics method to calculate the protonation curves and pKa of each titrable residue in the four decapeptides, in the absence of Cu(2+) ions. The global protonation curves obtained in our simulations are in very good agreement with the existing potentiometric titration curves. The histidines are titrating very closely, and the Asp forms abundant salt bridges with the basic residues, displaying an unusually low pKa value. In addition, we could observe that the four peptides are very unstructured in the absence of copper, and not even the cyclic forms exhibit a significant β-sheet, unlike what could be expected from the presence of β-turn inducer units in this type of scaffold.
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Affiliation(s)
- Sara R R Campos
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa , Av. da República, 2780-157 Oeiras, Portugal
| | - Olga Iranzo
- Aix Marseille Université , Centrale Marseille, CNRS, iSm2 UMR 7313, 13397 Marseille, France
| | - António M Baptista
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa , Av. da República, 2780-157 Oeiras, Portugal
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21
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Starck M, Sisommay N, Laporte FA, Oros S, Lebrun C, Delangle P. Preorganized Peptide Scaffolds as Mimics of Phosphorylated Proteins Binding Sites with a High Affinity for Uranyl. Inorg Chem 2015; 54:11557-62. [PMID: 26583259 DOI: 10.1021/acs.inorgchem.5b02249] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Cyclic peptides with two phosphoserines and two glutamic acids were developed to mimic high-affinity binding sites for uranyl found in proteins such as osteopontin, which is believed to be a privileged target of this ion in vivo. These peptides adopt a β-sheet structure that allows the coordination of the latter amino acid side chains in the equatorial plane of the dioxo uranyl cation. Complementary spectroscopic and analytical methods revealed that these cyclic peptides are efficient uranyl chelating peptides with a large contribution from the phosphorylated residues. The conditional affinity constants were measured by following fluorescence tryptophan quenching and are larger than 10(10) at physiological pH. These compounds are therefore promising models for understanding uranyl chelation by proteins, which is relevant to this actinide ion toxicity.
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Affiliation(s)
- Matthieu Starck
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Nathalie Sisommay
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Fanny A Laporte
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Stéphane Oros
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Colette Lebrun
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Pascale Delangle
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
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22
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Fragoso A, Carvalho T, Rousselot-Pailley P, Correia dos Santos MM, Delgado R, Iranzo O. Effect of the Peptidic Scaffold in Copper(II) Coordination and the Redox Properties of Short Histidine-Containing Peptides. Chemistry 2015; 21:13100-11. [DOI: 10.1002/chem.201501715] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Indexed: 01/07/2023]
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23
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Kuczer M, Matusiak A, Czarniewska E, Rosiński G, Kowalik-Jankowska T. Copper(II) complexes of Neb-colloostatin and of (P4A) analogue Stability Structure Apoptosis. Polyhedron 2015. [DOI: 10.1016/j.poly.2014.08.048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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24
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Lebrun C, Starck M, Gathu V, Chenavier Y, Delangle P. Engineering Short Peptide Sequences for Uranyl Binding. Chemistry 2014; 20:16566-73. [DOI: 10.1002/chem.201404546] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Indexed: 01/16/2023]
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25
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Kotynia A, Czyżnikowska Ż, Bielińska S, Szyrwiel Ł, Kamysz W, Malinka W, Brasuń J. The impact of two –GlyProGly– motifs on formation of di-copper complexes by His4-cyclopeptides. NEW J CHEM 2014. [DOI: 10.1039/c4nj00689e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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