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Caso C, Altmann KH. Cyclization by Intramolecular Suzuki-Miyaura Cross-Coupling-A Review. Chemistry 2024:e202402664. [PMID: 39385337 DOI: 10.1002/chem.202402664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Revised: 10/03/2024] [Accepted: 10/08/2024] [Indexed: 10/12/2024]
Abstract
Ring systems of all sizes are frequent core or substructures in natural products and they are important elements of many drug molecules, as they often confer high binding affinity to and selectivity for disease-relevant biological targets. A uniform key transformation in the synthesis of such structures is the cyclization step. Among the various approaches that have been developed for ring closure, the intramolecular Suzuki-Miyaura reaction has emerged as a powerful option for the construction of normal- and medium-sized rings as well as macrocycles, due to its stereospecificity, the mild reaction conditions, and the non-toxic nature of the boron by-products. In this review, we summarize the state-of-the-art of the application of intramolecular Suzuki-Miyaura cross-coupling reactions in the construction of (macro)cyclic frameworks of natural products and bioactive molecules of synthetic origin, covering (mostly) examples that have been reported since 2015. Target molecules prepared via intramolecular Suzuki-Miyaura cross-coupling as a key step range from natural products/natural product analogs to synthetic drug candidates, featuring ring sizes from 4 to ≫12. We highlight the utility, scope, and limitations of the reaction for different ring sizes and arrays of functional groups. Where possible, comparisons with other methods of cyclization are provided.
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Affiliation(s)
- Carolina Caso
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zürich, HCI H429, Vladimir-Prelog-Weg 1-5/10, 8093, Zürich, Switzerland
| | - Karl-Heinz Altmann
- Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zürich, HCI H429, Vladimir-Prelog-Weg 1-5/10, 8093, Zürich, Switzerland
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2
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Pengthong P, Bopp PA, Jungsuttiwong S, Nanok T. Mechanistic insights into the self-esterification of lactic acid under neutral and acidic conditions. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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3
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Affiliation(s)
| | - Brian R. James
- Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada
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4
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Nyerges M, Tatai J, Molnár M, Villeneuve M, Haberkorn L. Development of a Scalable Synthesis of SIRT1 Modulator Macrocycles. HETEROCYCLES 2022. [DOI: 10.3987/com-21-14599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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5
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Schlatzer T, Schröder H, Trobe M, Lembacher‐Fadum C, Stangl S, Schlögl C, Weber H, Breinbauer R. Pd/BIPHEPHOS is an Efficient Catalyst for the Pd-Catalyzed S-Allylation of Thiols with High n-Selectivity. Adv Synth Catal 2020; 362:331-336. [PMID: 32063821 PMCID: PMC7004212 DOI: 10.1002/adsc.201901250] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 10/22/2019] [Indexed: 11/06/2022]
Abstract
The Pd-catalyzed S-allylation of thiols with stable allylcarbonate and allylacetate reagents offers several advantages over established reactions for the formation of thioethers. We could demonstrate that Pd/BIPHEPHOS is a catalyst system which allows the transition metal-catalyzed S-allylation of thiols with excellent n-regioselectivity. Mechanistic studies showed that this reaction is reversible under the applied reaction conditions. The excellent functional group tolerance of this transformation was demonstrated with a broad variety of thiol nucleophiles (18 examples) and allyl substrates (9 examples), and could even be applied for the late-stage diversification of cephalosporins, which might find application in the synthesis of new antibiotics.
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Affiliation(s)
- Thomas Schlatzer
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Hilmar Schröder
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Melanie Trobe
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | | | - Simon Stangl
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Christoph Schlögl
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Hansjörg Weber
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Rolf Breinbauer
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
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6
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Schlatzer T, Kriegesmann J, Schröder H, Trobe M, Lembacher-Fadum C, Santner S, Kravchuk AV, Becker CFW, Breinbauer R. Labeling and Natural Post-Translational Modification of Peptides and Proteins via Chemoselective Pd-Catalyzed Prenylation of Cysteine. J Am Chem Soc 2019; 141:14931-14937. [PMID: 31469558 PMCID: PMC6776382 DOI: 10.1021/jacs.9b08279] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Indexed: 02/06/2023]
Abstract
The prenylation of peptides and proteins is an important post-translational modification observed in vivo. We report that the Pd-catalyzed Tsuji-Trost allylation with a Pd/BIPHEPHOS catalyst system allows the allylation of Cys-containing peptides and proteins with complete chemoselectivity and high n/i regioselectivity. In contrast to recently established methods, which use non-native connections, the Pd-catalyzed prenylation produces the natural n-prenylthioether bond. In addition, a variety of biophysical probes such as affinity handles and fluorescent tags can be introduced into Cys-containing peptides and proteins. Furthermore, peptides containing two cysteine residues can be stapled or cyclized using homobifunctional allylic carbonate reagents.
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Affiliation(s)
- Thomas Schlatzer
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Julia Kriegesmann
- Institute
of Biological Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 38, A-1090 Vienna, Austria
| | - Hilmar Schröder
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Melanie Trobe
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Christian Lembacher-Fadum
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Simone Santner
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Alexander V. Kravchuk
- Institute
of Biological Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 38, A-1090 Vienna, Austria
| | - Christian F. W. Becker
- Institute
of Biological Chemistry, Faculty of Chemistry, University of Vienna, Währinger Strasse 38, A-1090 Vienna, Austria
| | - Rolf Breinbauer
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse 9, A-8010 Graz, Austria
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7
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Mountanea OG, Limnios D, Kokotou MG, Bourboula A, Kokotos G. Asymmetric Synthesis of Saturated Hydroxy Fatty Acids and Fatty Acid Esters of Hydroxy Fatty Acids. European J Org Chem 2019. [DOI: 10.1002/ejoc.201801881] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Olga G. Mountanea
- Laboratory of Organic Chemistry; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis Athens 15771 Greece
| | - Dimitris Limnios
- Laboratory of Organic Chemistry; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis Athens 15771 Greece
| | - Maroula G. Kokotou
- Laboratory of Organic Chemistry; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis Athens 15771 Greece
| | - Asimina Bourboula
- Laboratory of Organic Chemistry; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis Athens 15771 Greece
| | - George Kokotos
- Laboratory of Organic Chemistry; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis Athens 15771 Greece
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Kljajic M, Puschnig JG, Weber H, Breinbauer R. Additive-Free Pd-Catalyzed α-Allylation of Imine-Containing Heterocycles. Org Lett 2017; 19:126-129. [PMID: 27936786 PMCID: PMC5223276 DOI: 10.1021/acs.orglett.6b03407] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2016] [Indexed: 11/28/2022]
Abstract
An additive-free Pd-catalyzed α-allylation of different imino-group-ontaining heterocycles is reported. The activation of α-CH pronucleophiles (pKa (DMSO) > 25) occurs without the addition of strong bases or Lewis acids using only the Pd/Xantphos catalyst system. The reaction scope has been studied for various 5- and 6-membered nitrogen-containing heterocycles (yields up to 96%). Mechanistic investigations suggest an initial allylation of the imine-N followed by a Pd-catalyzed formal aza-Claisen rearrangement.
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Affiliation(s)
- Marko Kljajic
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse
9, A-8010 Graz, Austria
| | - Johannes G. Puschnig
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse
9, A-8010 Graz, Austria
| | - Hansjörg Weber
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse
9, A-8010 Graz, Austria
| | - Rolf Breinbauer
- Institute
of Organic Chemistry, Graz University of
Technology, Stremayrgasse
9, A-8010 Graz, Austria
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9
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Ronson TO, Taylor RJ, Fairlamb IJ. Palladium-catalysed macrocyclisations in the total synthesis of natural products. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.11.009] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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10
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Lumpi D, Braunshier C, Horkel E, Hametner C, Fröhlich J. Synthesis and application of monodisperse oligo(oxyethylene)-grafted polystyrene resins for solid-phase organic synthesis. ACS COMBINATORIAL SCIENCE 2014; 16:367-74. [PMID: 24941069 DOI: 10.1021/co500028h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In a preliminary investigation by our group, we found that poly(styrene-oxyethylene) graft copolymers (PS-PEG), for example, TentaGel resins, are advantageous for gel-phase (13)C NMR spectroscopy. Because of the solution-like environment provided by the PS-PEG resins, good spectral quality of the attached moiety can be achieved, which is useful for nondestructive on-resin analysis. The general drawbacks of such resins are low loading capacities and the intense signal in the spectra resulting from the PEG linker (>50 units). Here, we describe the characterization of solvent-dependent swelling and reaction kinetics on a new type of resin for solid-phase organic synthesis (SPOS) that allows an accurate monitoring by gel-phase NMR without the above disadvantages. A series of polystyrene-oligo(oxyethylene) graft copolymers containing monodisperse PEG units (n = 2-12) was synthesized. A strong correlation between the linker (PEG) length and the line widths in the (13)C gel-phase spectra was observed, with a grafted PEG chain of 8 units giving similar results in terms of reactivity and gel-phase NMR monitoring to TentaGel resin. Multistep on-resin reaction sequences were performed to prove the applicability of the resins in solid-phase organic synthesis.
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Affiliation(s)
- Daniel Lumpi
- Institute of Applied Synthetic
Chemistry, Vienna University of Technology, Getreidemarkt 9/163, 1060 Vienna, Austria
| | - Christian Braunshier
- Institute of Applied Synthetic
Chemistry, Vienna University of Technology, Getreidemarkt 9/163, 1060 Vienna, Austria
| | - Ernst Horkel
- Institute of Applied Synthetic
Chemistry, Vienna University of Technology, Getreidemarkt 9/163, 1060 Vienna, Austria
| | - Christian Hametner
- Institute of Applied Synthetic
Chemistry, Vienna University of Technology, Getreidemarkt 9/163, 1060 Vienna, Austria
| | - Johannes Fröhlich
- Institute of Applied Synthetic
Chemistry, Vienna University of Technology, Getreidemarkt 9/163, 1060 Vienna, Austria
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