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Liao Z, Das A, Robb CG, Beveridge R, Wynne K. Amorphous aggregates with a very wide size distribution play a central role in crystal nucleation. Chem Sci 2024; 15:12420-12430. [PMID: 39118639 PMCID: PMC11304771 DOI: 10.1039/d4sc00452c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 07/03/2024] [Indexed: 08/10/2024] Open
Abstract
There is mounting evidence that crystal nucleation from supersaturated solution involves the formation and reorganization of prenucleation clusters, contradicting classical nucleation theory. One of the key unresolved issues pertains to the origin, composition, and structure of these clusters. Here, a range of amino acids and peptides is investigated using light scattering, mass spectrometry, and in situ terahertz Raman spectroscopy, showing that the presence of amorphous aggregates is a general phenomenon in supersaturated solutions. Significantly, these aggregates are found on a vast range of length scales from dimers to 30-mers to the nanometre and even micrometre scale, implying a continuous distribution throughout this range. Larger amorphous aggregates are sites of spontaneous crystal nucleation and act as intermediates for laser-induced crystal nucleation. These results are shown to be consistent with a nonclassical nucleation model in which barrierless (homogeneous) nucleation of amorphous aggregates is followed by the nucleation of crystals from solute-enriched aggregates. This provides a novel perspective on crystal nucleation and the role of nonclassical pathways.
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Affiliation(s)
- Zhiyu Liao
- School of Chemistry, University of Glasgow G12 8QQ UK
| | - Ankita Das
- School of Chemistry, University of Glasgow G12 8QQ UK
| | - Christina Glen Robb
- Dept. of Pure and Applied Chemistry, University of Strathclyde Glasgow G1 1XL UK
| | - Rebecca Beveridge
- Dept. of Pure and Applied Chemistry, University of Strathclyde Glasgow G1 1XL UK
| | - Klaas Wynne
- School of Chemistry, University of Glasgow G12 8QQ UK
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Hasan SMK, Islam SR, Zerin I, Ahmed T, Rahman S. Gelatin/EGDE Ultrafine Composite Fibers Reinforced with 3D Spacer Fabric as Bicomponent Scaffolds for Tissue Engineering. ACS APPLIED BIO MATERIALS 2024; 7:4593-4601. [PMID: 38914048 DOI: 10.1021/acsabm.4c00469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
Protein-based ultrafine fibrous scaffolds can mimic the native extracellular matrices (ECMs) with regard to the morphology and chemical composition but suffer from poor mechanical and wet stability. As a result, cells cannot get a true three-dimensional (3D) environment as they find in native ECMs. In this study, an epoxide, ethylene glycol diglycidylether (EGDE), with high reactivity to active hydrogen is introduced to gelatin solution, serving as an effective cross-linker. The gelatin/EGDE 3D-ultrafine (∼500 nm in diameter) fibrous composite scaffolds are made by an ultralow-concentration phase separation technique (ULCPS). The effects of the polymer content and modification conditions on the morphology and wet stability of the constructs are investigated. It is revealed that ultrafine fibers with 3D random orientation could be formed at low concentrations (0.01, 0.05, and 0.1 wt %, respectively). The wet stability of the constructs could be effectively improved by introducing EGDE into the gelatin system. The shrinkage is reduced to merely 2.14% after the modification at 120 °C for 2 h and could be maintained for up to 3 days. In order to improve the compression properties, the same technique is utilized with the presence of a poly(lactic acid) (PLA) spacer fabric to produce a bicomponent scaffold. The mechanical property and cell viability of the bicomponent scaffolds are investigated, and it is found that cells could enter deep inside and orient themselves randomly at the central area of the bicomponent scaffold. The modification and design approach presented in this study has the potential to provide various protein-based ultrafine fibrous biomaterials for a variety of biomedical applications.
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Affiliation(s)
- S M Kamrul Hasan
- Department of Textile Engineering, National Institute of Textile Engineering and Research (NITER), University of Dhaka, Dhaka 1350, Bangladesh
- Shanghai Frontier Science Research Center for Modern Textiles, College of Textiles, Donghua University, Shanghai 201620, China
- Department of Fashion and Textiles, School of Design and Social Context, RMIT University, 25 Dawson Street, Brunswick, Victoria 3054, Australia
| | - Syed Rashedul Islam
- Department of Textile Engineering, National Institute of Textile Engineering and Research (NITER), University of Dhaka, Dhaka 1350, Bangladesh
- Shanghai Frontier Science Research Center for Modern Textiles, College of Textiles, Donghua University, Shanghai 201620, China
- Department of Textile Engineering, Apparel Manufacture and Technology, BGMEA University of Fashion and Technology, Dhaka 1230, Bangladesh
| | - Ismat Zerin
- Department of Textile Engineering, National Institute of Textile Engineering and Research (NITER), University of Dhaka, Dhaka 1350, Bangladesh
| | - Toufique Ahmed
- Department of Textile Engineering, National Institute of Textile Engineering and Research (NITER), University of Dhaka, Dhaka 1350, Bangladesh
| | - Sadikur Rahman
- Department of Textile Engineering, National Institute of Textile Engineering and Research (NITER), University of Dhaka, Dhaka 1350, Bangladesh
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Biological colloids: Unique properties of membranelles organelles in the cell. Adv Colloid Interface Sci 2022; 310:102777. [DOI: 10.1016/j.cis.2022.102777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 09/12/2022] [Accepted: 09/14/2022] [Indexed: 11/24/2022]
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Liao Z, Wynne K. A Metastable Amorphous Intermediate Is Responsible for Laser-Induced Nucleation of Glycine. J Am Chem Soc 2022; 144:6727-6733. [PMID: 35384650 DOI: 10.1021/jacs.1c11154] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Laser-induced crystal nucleation through optical tweezing, and in particular polymorph selection through laser polarization, promises unprecedented control over crystallization. However, in the absence of a nearby liquid-liquid critical point or miscibility gap, the origin of the required mesoscale clusters remains unclear. A number of recent studies of so-called nonclassical nucleation have suggested the presence of large amorphous clusters. Here, we show that supersaturated aqueous glycine solutions form metastable intermediate particles that are off the direct path to crystal nucleation. Laser-induced crystal nucleation only occurs when the laser "activates" one of these particles. In situ low-frequency Raman spectroscopy is used to demonstrate their amorphous or partially ordered character and transformation to various crystal polymorphs. The requirement for solution aging in many previously reported laser-induced crystal nucleation experiments strongly suggests that the presence of amorphous intermediates is a general requirement.
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Affiliation(s)
- Zhiyu Liao
- School of Chemistry, University of Glasgow, Glasgow G12 8QQ, U.K
| | - Klaas Wynne
- School of Chemistry, University of Glasgow, Glasgow G12 8QQ, U.K
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Exploring Nucleation Pathways in Distinct Physicochemical Environments Unveiling Novel Options to Modulate and Optimize Protein Crystallization. CRYSTALS 2022. [DOI: 10.3390/cryst12030437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The scientific discussion about classical and nonclassical nucleation theories has lasted for two decades so far. Recently, multiple nucleation pathways and the occurrence and role of metastable intermediates in crystallization processes have attracted increasing attention, following the discovery of functional phase separation, which is now under investigation in different fields of cellular life sciences, providing interesting and novel aspects for conventional crystallization experiments. In this context, more systematic investigations need to be carried out to extend the current knowledge about nucleation processes. In terms of the data we present, a well-studied model protein, glucose isomerase (GI), was employed first to investigate systematically the early stages of the crystallization process, covering condensing and prenucleation ordering of protein molecules in diverse scenarios, including varying ionic and crowding agent conditions, as well as the application of a pulsed electric field (pEF). The main method used to characterize the early events of nucleation was synchronized polarized and depolarized dynamic light scattering (DLS/DDLS), which is capable of collecting the polarized and depolarized component of scattered light from a sample suspension in parallel, thus monitoring the time-resolved evolution of the condensation and geometrical ordering of proteins at the early stages of nucleation. A diffusion interaction parameter, KD, of GI under varying salt conditions was evaluated to discuss how the proportion of specific and non-specific protein–protein interactions affects the nucleation process. The effect of mesoscopic ordered clusters (MOCs) on protein crystallization was explored further by adding different ratios of MOCs induced by a pEF to fresh GI droplets in solution with different PEG concentrations. To emphasize and complement the data and results obtained with GI, a recombinant pyridoxal 5-phosphate (vitamin B6) synthase (Pdx) complex of Staphylococcus aureus assembled from twelve monomers of Pdx1 and twelve monomers of Pdx2 was employed to validate the ability of the pEF influencing the nucleation of complex macromolecules and the effect of MOCs on adjusting the crystallization pathway. In summary, our data revealed multiple nucleation pathways by tuning the proportion of specific and non-specific protein interactions, or by utilizing a pEF which turned out to be efficient to accelerate the nucleation process. Finally, a novel and reproducible experimental strategy, which can adjust and facilitate a crystallization process by pEF-induced MOCs, was summarized and reported for the first time.
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Reichenbach J, Wynne K. Frustration vs Prenucleation: Understanding the Surprising Stability of Supersaturated Sodium Thiosulfate Solutions. J Phys Chem B 2018; 122:7590-7596. [DOI: 10.1021/acs.jpcb.8b04112] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
| | - Klaas Wynne
- School of Chemistry, University of Glasgow, Glasgow G12 8QQ, U.K
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Lupi L, Hanscam R, Qiu Y, Molinero V. Reaction Coordinate for Ice Crystallization on a Soft Surface. J Phys Chem Lett 2017; 8:4201-4205. [PMID: 28823159 DOI: 10.1021/acs.jpclett.7b01855] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The control of assembly and crystallization of molecules is becoming increasingly important in chemistry, engineering, and materials sciences. Crystallization is also central to understand natural processes that include the formation of atmospheric ice and biomineralization. Organic surfaces, biomolecules, and even liquid/vapor interfaces can promote the nucleation of crystals. These soft surfaces present significant structural fluctuations, which have been shown to strongly impact the rate of crystallization. This raises the question of whether degrees of freedom of soft surfaces play a role in the reaction coordinate for crystal nucleation. Here we use molecular simulations to investigate the mechanism of ice nucleation promoted by an alcohol monolayer. Our analysis indicates that while the flexibility of the surface strongly depresses its ice nucleation ability, it does not play a role in the coordinate that controls the transformation from liquid to ice. We find that the variable that drives the transformation is the size of the crystalline cluster, the same as that for the homogeneous crystallization. We argue that this is a general result that arises from the separation of time scales between surface fluctuations and the crossing of the transition state barrier for crystallization.
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Affiliation(s)
- Laura Lupi
- Department of Chemistry, The University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112-0850, United States
| | - Rebecca Hanscam
- Department of Chemistry, The University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112-0850, United States
| | - Yuqing Qiu
- Department of Chemistry, The University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112-0850, United States
| | - Valeria Molinero
- Department of Chemistry, The University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112-0850, United States
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Frustration of crystallisation by a liquid-crystal phase. Sci Rep 2017; 7:42439. [PMID: 28209972 PMCID: PMC5314399 DOI: 10.1038/srep42439] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 01/10/2017] [Indexed: 12/26/2022] Open
Abstract
Frustration of crystallisation by locally favoured structures is critically important in linking the phenomena of supercooling, glass formation, and liquid-liquid transitions. Here we show that the putative liquid-liquid transition in n-butanol is in fact caused by geometric frustration associated with an isotropic to rippled lamellar liquid-crystal transition. Liquid-crystal phases are generally regarded as being “in between” the liquid and the crystalline state. In contrast, the liquid-crystal phase in supercooled n-butanol is found to inhibit transformation to the crystal. The observed frustrated phase is a template for similar ordering in other liquids and likely to play an important role in supercooling and liquid-liquid transitions in many other molecular liquids.
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Radu M, Kremer K. Enhanced Crystal Growth in Binary Lennard-Jones Mixtures. PHYSICAL REVIEW LETTERS 2017; 118:055702. [PMID: 28211741 DOI: 10.1103/physrevlett.118.055702] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Indexed: 06/06/2023]
Abstract
We study the crystal growth in binary Lennard-Jones mixtures by molecular dynamics simulations. Growth dynamics, the structure of the liquid-solid interfaces as well as droplet incorporation into the crystal vary with solution properties. For demixed systems we observe a strongly enhanced crystal growth at the cost of enclosed impurities. Furthermore, we find different interface morphologies depending on solubility. We relate our observations to growth mechanisms based on the Gibbs-Thomson effect as well as to predictions of the Kardar-Parisi-Zhang theory in 2+1 dimensions.
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Affiliation(s)
- M Radu
- Max-Planck Institut für Polymerforschung, Ackermannweg 10, D-55128 Mainz, Germany
| | - K Kremer
- Max-Planck Institut für Polymerforschung, Ackermannweg 10, D-55128 Mainz, Germany
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