1
|
Hernández D, Porras M, Boto A. Conversion of Hydroxyproline "Doubly Customizable Units" to Hexahydropyrimidines: Access to Conformationally Constrained Peptides. J Org Chem 2023. [PMID: 37429014 PMCID: PMC10367070 DOI: 10.1021/acs.joc.3c00673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2023]
Abstract
The efficient transformation of hydroxyproline "doubly customizable units" into rigid hexahydropyrimidine units takes place in good global yields and generates compounds of pharmaceutical interest. In particular, the process can readily provide access to peptidomimetics and peptides with reversed sequences or with valuable turns.
Collapse
Affiliation(s)
- Dácil Hernández
- Instituto de Productos Naturales y Agrobiología del CSIC, Avda. Astrofísico Fco. Sánchez, 3, La Laguna, Tenerife 38206, Spain
| | - Marina Porras
- Instituto de Productos Naturales y Agrobiología del CSIC, Avda. Astrofísico Fco. Sánchez, 3, La Laguna, Tenerife 38206, Spain
| | - Alicia Boto
- Instituto de Productos Naturales y Agrobiología del CSIC, Avda. Astrofísico Fco. Sánchez, 3, La Laguna, Tenerife 38206, Spain
| |
Collapse
|
2
|
Loza E, Sarciaux M, Ikaunieks M, Katkevics M, Kukosha T, Trufilkina N, Ryabova V, Shubin K, Pantel L, Serri M, Huseby DL, Cao S, Yadav K, Hjort K, Hughes D, Gualtieri M, Suna E, Racine E. Structure-activity relationship studies on the inhibition of the bacterial translation of novel Odilorhabdins analogues. Bioorg Med Chem 2020; 28:115469. [PMID: 32279921 DOI: 10.1016/j.bmc.2020.115469] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 03/10/2020] [Accepted: 03/25/2020] [Indexed: 10/24/2022]
Abstract
A structure-activity relationship (SAR) study of NOSO-95179, a nonapeptide from the Odilorhabdin class of antibacterials, was performed by systematic variations of amino acids in positions 2 and 5 of the peptide. A series of non-proteinogenic amino acids was synthesized in high enantiomeric purity from Williams' chiral diphenyloxazinone by highly diastereoselective alkylation or by aldol-type reaction. NOSO-95179 analogues for SAR studies were prepared using solid-phase peptide synthesis. Inhibition of bacterial translation by each of the synthesized Odilorhabdin analogues was measured using an in vitro test. For the most efficient analogues, antibacterial efficacy was measured against two wild-type Enterobacteriaceae (Escherichia coli and Klebsiella pneumoniae) and against an efflux defective E. coli strain (ΔtolC) to evaluate the impact of efflux on the antibacterial activity.
Collapse
Affiliation(s)
- Einars Loza
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Matthieu Sarciaux
- Nosopharm, 110 allée Charles Babbage, Espace Innovation 2, 30000 Nîmes, France
| | - Martins Ikaunieks
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Martins Katkevics
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Tatyana Kukosha
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Nadezhda Trufilkina
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Victoria Ryabova
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Kirill Shubin
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia
| | - Lucile Pantel
- Nosopharm, 110 allée Charles Babbage, Espace Innovation 2, 30000 Nîmes, France
| | - Marine Serri
- Nosopharm, 110 allée Charles Babbage, Espace Innovation 2, 30000 Nîmes, France
| | - Douglas L Huseby
- Department of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala, Sweden
| | - Sha Cao
- Department of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala, Sweden
| | - Kavita Yadav
- Department of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala, Sweden
| | - Karin Hjort
- Department of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala, Sweden
| | - Diarmaid Hughes
- Department of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala, Sweden
| | - Maxime Gualtieri
- Nosopharm, 110 allée Charles Babbage, Espace Innovation 2, 30000 Nîmes, France
| | - Edgars Suna
- Latvian Institute of Organic Synthesis, Aizkraukles 21, LV-1006 Riga, Latvia.
| | - Emilie Racine
- Nosopharm, 110 allée Charles Babbage, Espace Innovation 2, 30000 Nîmes, France.
| |
Collapse
|
3
|
Temperini A, Aiello D, Mazzotti F, Athanassopoulos CM, De Luca P, Siciliano C. 2,3-Diaminopropanols Obtained from d-Serine as Intermediates in the Synthesis of Protected 2,3-l-Diaminopropanoic Acid (l-Dap) Methyl Esters. Molecules 2020; 25:E1313. [PMID: 32183079 PMCID: PMC7145313 DOI: 10.3390/molecules25061313] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Revised: 03/10/2020] [Accepted: 03/12/2020] [Indexed: 11/16/2022] Open
Abstract
A synthetic strategy for the preparation of two orthogonally protected methyl esters of the non-proteinogenic amino acid 2,3-l-diaminopropanoic acid (l-Dap) was developed. In these structures, the base-labile protecting group 9-fluorenylmethyloxycarbonyl (Fmoc) was paired to the p-toluensulfonyl (tosyl, Ts) or acid-labile tert-butyloxycarbonyl (Boc) moieties. The synthetic approach to protected l-Dap methyl esters uses appropriately masked 2,3-diaminopropanols, which are obtained via reductive amination of an aldehyde prepared from the commercial amino acid Nα-Fmoc-O-tert-butyl-d-serine, used as the starting material. Reductive amination is carried out with primary amines and sulfonamides, and the process is assisted by the Lewis acid Ti(OiPr)4. The required carboxyl group is installed by oxidizing the alcoholic function of 2,3-diaminopropanols bearing the tosyl or benzyl protecting group on the 3-NH2 site. The procedure can easily be applied using the crude product obtained after each step, minimizing the need for chromatographic purifications. Chirality of the carbon atom of the starting d-serine template is preserved throughout all synthetic steps.
Collapse
Affiliation(s)
- Andrea Temperini
- Dipartimento di Scienze Farmaceutiche, Università di Perugia, Via del Liceo 1, 06123 Perugia, Italy;
| | - Donatella Aiello
- Dipartimento di Chimica e Tecnologie Chimiche (CTC), Via Ponte P. Bucci, Cubo 12D, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy; (D.A.); (F.M.)
| | - Fabio Mazzotti
- Dipartimento di Chimica e Tecnologie Chimiche (CTC), Via Ponte P. Bucci, Cubo 12D, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy; (D.A.); (F.M.)
| | | | - Pierantonio De Luca
- Dipartimento di Ingegneria Meccanica, Energetica e Gestionale, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy;
| | - Carlo Siciliano
- Dipartimento di Farmacia e Scienze della Salute e della Nutrizione, Edificio Polifunzionale, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy
| |
Collapse
|
4
|
Chen Y. Advances in the Synthesis of Methylated Products through Indirect Approaches. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201901240] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yantao Chen
- Medicinal Chemistry, Research and Early DevelopmentCardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca 43183 Gothenburg Sweden
| |
Collapse
|
5
|
Smolobochkin AV, Gazizov AS, Burilov AR, Pudovik MA, Sinyashin OG. Ring opening reactions of nitrogen heterocycles. RUSSIAN CHEMICAL REVIEWS 2019. [DOI: 10.1070/rcr4891] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
6
|
Aronoff MR, Egli J, Menichelli M, Wennemers H. γ‐Azaproline Confers pH Responsiveness and Functionalizability on Collagen Triple Helices. Angew Chem Int Ed Engl 2019; 58:3143-3146. [DOI: 10.1002/anie.201813048] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Revised: 01/08/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Matthew R. Aronoff
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Jasmine Egli
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | | | - Helma Wennemers
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| |
Collapse
|
7
|
Aronoff MR, Egli J, Menichelli M, Wennemers H. γ‐Azaproline Confers pH Responsiveness and Functionalizability on Collagen Triple Helices. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Matthew R. Aronoff
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | - Jasmine Egli
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| | | | - Helma Wennemers
- Laboratory of Organic ChemistryETH Zürich Vladimir-Prelog-Weg 3 8093 Zürich Switzerland
| |
Collapse
|