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Wieske LE, Erdelyi M. Halogen Bonds of Halogen(I) Ions─Where Are We and Where to Go? J Am Chem Soc 2024; 146:3-18. [PMID: 38117016 PMCID: PMC10785816 DOI: 10.1021/jacs.3c11449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/20/2023] [Accepted: 12/01/2023] [Indexed: 12/21/2023]
Abstract
Halenium ions, X+, are particularly strong halogen-bond donors that interact with two Lewis bases simultaneously to form linear [D···X···D]+-type halonium complexes. Their three-center, four-electron halogen bond is both fundamentally interesting and technologically valuable as it tames the reactivity of halogen(I) ions, opening up new horizons in a variety of fields including synthetic organic and supramolecular chemistry. Understanding this bonding situation enables the development of improved halogen(I) transfer reactions and of advanced functional materials. Following a decade of investigations of basic principles, the range of applications is now rapidly widening. In this Perspective, we assess the status of the field and identify its key advances and the main bottlenecks. Clearing common misunderstandings that may hinder future progress, we aim to inspire and direct future research efforts.
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Affiliation(s)
- Lianne
H. E. Wieske
- Department of Chemistry−BMC, Uppsala University, Box 576, SE-751 23 Uppsala, Sweden
| | - Mate Erdelyi
- Department of Chemistry−BMC, Uppsala University, Box 576, SE-751 23 Uppsala, Sweden
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2
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Adeniyi E, Odubo FE, Zeller M, Torubaev YV, Rosokha SV. Halogen Bonding and/or Covalent Bond: Analogy of 3c-4e N···I···X (X = Cl, Br, I, and N) Interactions in Neutral, Cationic, and Anionic Complexes. Inorg Chem 2023; 62:18239-18247. [PMID: 37870922 DOI: 10.1021/acs.inorgchem.3c02843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
X-ray structural measurements and computational analysis demonstrated the similarity of the geometries and electronic structures of the X-I···N (X = Cl, Br, I, and N) bonding in strong halogen-bonded (HaB) complexes and in the anionic or cationic halonium ions. In particular, I···N bond lengths in the solid-state associations formed by strong HaB donors (e.g., I2, IBr, ICl, and N-iodosuccinimide) and acceptors (e.g., quinuclidine or pyridines) were in the same range of 2.3 ± 0.1 Å as those in the halonium ions [e.g., the bis(quinuclidine)iodonium cation or the 1,1'-iodanylbis(pyrrolidine-2,5-dione) anion]. In all cases, bond lengths were much closer to those of the N-I covalent bond than to the van der Waals separations of these atoms. The strong N···I bonding in the HaB complexes led to a substantial charge transfer, lengthening and weakening of the I···X bonds, and polarization of the HaB donors. As a result, the central iodine atoms in the strong HaB complexes bear partial positive charges akin to those in the halonium ions. The energies and Mayer bond orders for both N···I and I···X bonds in such associations are also comparable to those in the halonium ions. The similarity of the bonding in such complexes and in halonium ions was further supported by the analysis of electron densities and energies at bond critical (3, -1) points in the framework of the quantum theory of atoms in molecules and by the density overlap region indicator. Overall, all these data point out the analogy of the symmetric N···I···N bonding in the halonium ions and the asymmetric X···I···N bonding in the strong HaB complexes, as well as the weakly covalent character of these 3c-4e interactions.
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Affiliation(s)
- Emmanuel Adeniyi
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
| | - Favour E Odubo
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
| | - Matthias Zeller
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Yury V Torubaev
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Sergiy V Rosokha
- Department of Chemistry, Ball State University, Muncie, Indiana 47306, United States
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3
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Abstract
The geometrical parameters and the bonding in [D···X···D]+ halonium compounds, where D is a Lewis base with N as the donor atom and X is Cl, Br, or I, have been investigated through a combined structural and computational study. Cambridge Structural Database (CSD) searches have revealed linear and symmetrical [D···X···D]+ frameworks with neutral donors. By means of density functional theory (DFT), molecular electrostatic potential (MEP), and energy decomposition analyses (EDA) calculations, we have studied the effect of various halogen atoms (X) on the [D···X···D]+ framework, the effect of different nitrogen-donor groups (D) attached to an iodonium cation (X = I), and the influence of the electron density alteration on the [D···I···D]+ halonium bond by variation of the R substituents at the N-donor upon the symmetry, strength, and nature of the interaction. The physical origin of the interaction arises from a subtle interplay between electrostatic and orbital contributions (σ-hole bond). Interaction energies as high as 45 kcal/mol suggest that halonium bonds can be exploited for the development of novel halonium transfer agents, in asymmetric halofunctionalization or as building blocks in supramolecular chemistry.
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Affiliation(s)
- Juan D Velasquez
- Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) and Departmento de Química Inorgánica, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
| | - Jorge Echeverría
- Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) and Departmento de Química Inorgánica, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
| | - Santiago Alvarez
- Departament de Química Inorgànica i Orgànica and Institut de Química Teòrica i Computacional (IQTC-UB), Universitat de Barcelona, Martí i Franquès 1-11, 08028 Barcelona, Spain
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4
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Mersal GA, Basry A, Khodari M. Orthogonal hydrogen and halogen bonding for 1,1-dimethylbiguanide-halogen stabilization: Synthesis, structural, and spectroscopic study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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5
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Yu S, Ward JS, Truong K, Rissanen K. Carbonyl Hypoiodites as Extremely Strong Halogen Bond Donors. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202108126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Shilin Yu
- Department of Chemistry University of Jyvaskyla Survontie 9 B 40014 Jyväskylä Finland
| | - Jas S. Ward
- Department of Chemistry University of Jyvaskyla Survontie 9 B 40014 Jyväskylä Finland
| | - Khai‐Nghi Truong
- Department of Chemistry University of Jyvaskyla Survontie 9 B 40014 Jyväskylä Finland
| | - Kari Rissanen
- Department of Chemistry University of Jyvaskyla Survontie 9 B 40014 Jyväskylä Finland
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6
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Yu S, Ward JS, Truong K, Rissanen K. Carbonyl Hypoiodites as Extremely Strong Halogen Bond Donors. Angew Chem Int Ed Engl 2021; 60:20739-20743. [PMID: 34268851 PMCID: PMC8518949 DOI: 10.1002/anie.202108126] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Indexed: 12/19/2022]
Abstract
Neutral halogen-bonded O-I-N complexes were prepared from in situ formed carbonyl hypoiodites and aromatic organic bases. The carbonyl hypoiodites have a strongly polarized iodine atom with larger σ-holes than any known uncharged halogen bond donor. Modulating the Lewis basicity of the selected pyridine derivatives and carboxylates leads to halogen-bonded complexes where the classical O-I⋅⋅⋅N halogen bond transforms more into a halogen-bonded COO- ⋅⋅⋅I-N+ ion-pair (salt) with an asymmetric O-I-N moiety. X-ray analyses, NMR studies, and calculations reveal the halogen bonding geometries of the carbonyl hypoiodite-based O-I-N complexes, confirming that in the solid-state the iodine atom is much closer to the N-atom of the pyridine derivatives than its original position at the carboxylate O-atom.
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Affiliation(s)
- Shilin Yu
- Department of ChemistryUniversity of JyvaskylaSurvontie 9 B40014JyväskyläFinland
| | - Jas S. Ward
- Department of ChemistryUniversity of JyvaskylaSurvontie 9 B40014JyväskyläFinland
| | - Khai‐Nghi Truong
- Department of ChemistryUniversity of JyvaskylaSurvontie 9 B40014JyväskyläFinland
| | - Kari Rissanen
- Department of ChemistryUniversity of JyvaskylaSurvontie 9 B40014JyväskyläFinland
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7
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Yu S, Kumar P, Ward JS, Frontera A, Rissanen K. A “nucleophilic” iodine in a halogen-bonded iodonium complex manifests an unprecedented I+···Ag+ interaction. Chem 2021. [DOI: 10.1016/j.chempr.2021.01.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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8
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Zhu YJ, Gao Y, Tang MM, Rebek J, Yu Y. Dimeric capsules self-assembled through halogen and chalcogen bonding. Chem Commun (Camb) 2021; 57:1543-1549. [PMID: 33528464 DOI: 10.1039/d0cc07784d] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Supramolecular capsules are nanoscale containers useful for the study of molecular behavior in confined spaces. They offer practical applications in catalysis, molecular transport, drug delivery, and materials science. Self-assembly has proven to be an effective approach in constructing supramolecular capsules and a variety of well-known noncovalent interactions including hydrogen bonding, metal coordination and ionic interactions have been deployed. Bowl-shaped cavitand structures built up from resorcinarenes have particular advantages for the construction of supramolecular capsules, and this highlight discusses the unconventional self-assembly of molecular capsules held together by halogen and chalcogen bonds.
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Affiliation(s)
- Yu-Jie Zhu
- Center for Supramolecular Chemistry & Catalysis and Department of Chemistry, College of Science, Shanghai University, 99 Shang-Da Road, Shanghai, 200444, China.
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9
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Turunen L, Németh FB, Decato DA, Pápai I, Berryman OB, Erdélyi M. Halogen Bonds of Iodonium Ions: A World Dissimilar to Silver Coordination. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200274] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Lotta Turunen
- Department of Chemistry – BMC, Uppsala University, SE-751 23 Uppsala, Sweden
| | - Flóra Boróka Németh
- Institute of Organic Chemistry, Research Centre for Natural Sciences, H-1117 Budapest, Hungary
| | - Daniel A. Decato
- Department of Chemistry and Biochemistry, University of Montana, Missoula, MT 59812, USA
| | - Imre Pápai
- Institute of Organic Chemistry, Research Centre for Natural Sciences, H-1117 Budapest, Hungary
| | - Orion B. Berryman
- Department of Chemistry and Biochemistry, University of Montana, Missoula, MT 59812, USA
| | - Máté Erdélyi
- Department of Chemistry – BMC, Uppsala University, SE-751 23 Uppsala, Sweden
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10
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Zelenkov LE, Eliseeva AA, Baykov SV, Suslonov VV, Galmés B, Frontera A, Kukushkin VY, Ivanov DM, Bokach NA. Electron belt-to-σ-hole switch of noncovalently bound iodine(i) atoms in dithiocarbamate metal complexes. Inorg Chem Front 2021. [DOI: 10.1039/d1qi00314c] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The nature of metals in the isostructural series of dithiocarbamate complexes affects the electron belt-to-σ-hole switch of noncovalently bound iodine(i) leading to either semicoordination, or halogen bonding.
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Affiliation(s)
- Lev E. Zelenkov
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
- Department of Physics and Engineering
| | - Anastasiya A. Eliseeva
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Sergey V. Baykov
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Vitalii V. Suslonov
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Bartomeu Galmés
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
| | - Antonio Frontera
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
| | - Vadim Yu. Kukushkin
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
- Laboratory of Crystal Engineering of Functional Materials
| | - Daniil M. Ivanov
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Nadezhda A. Bokach
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
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11
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Sethio D, Raggi G, Lindh R, Erdélyi M. Halogen Bond of Halonium Ions: Benchmarking DFT Methods for the Description of NMR Chemical Shifts. J Chem Theory Comput 2020; 16:7690-7701. [PMID: 33136388 PMCID: PMC7726912 DOI: 10.1021/acs.jctc.0c00860] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Indexed: 12/20/2022]
Abstract
Because of their anisotropic electron distribution and electron deficiency, halonium ions are unusually strong halogen-bond donors that form strong and directional three-center, four-electron halogen bonds. These halogen bonds have received considerable attention owing to their applicability in supramolecular and synthetic chemistry and have been intensely studied using spectroscopic and crystallographic techniques over the past decade. Their computational treatment faces different challenges to those of conventional weak and neutral halogen bonds. Literature studies have used a variety of wave functions and DFT functionals for prediction of their geometries and NMR chemical shifts, however, without any systematic evaluation of the accuracy of these methods being available. In order to provide guidance for future studies, we present the assessment of the accuracy of 12 common DFT functionals along with the Hartree-Fock (HF) and the second-order Møller-Plesset perturbation theory (MP2) methods, selected from an initial set of 36 prescreened functionals, for the prediction of 1H, 13C, and 15N NMR chemical shifts of [N-X-N]+ halogen-bond complexes, where X = F, Cl, Br, and I. Using a benchmark set of 14 complexes, providing 170 high-quality experimental chemical shifts, we show that the choice of the DFT functional is more important than that of the basis set. The M06 functional in combination with the aug-cc-pVTZ basis set is demonstrated to provide the overall most accurate NMR chemical shifts, whereas LC-ωPBE, ωB97X-D, LC-TPSS, CAM-B3LYP, and B3LYP to show acceptable performance. Our results are expected to provide a guideline to facilitate future developments and applications of the [N-X-N]+ halogen bond.
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Affiliation(s)
- Daniel Sethio
- Department of Chemistry—BMC, Uppsala University, Box 576, 751 23 Uppsala, Sweden
| | - Gerardo Raggi
- Department of Chemistry—BMC, Uppsala University, Box 576, 751 23 Uppsala, Sweden
| | - Roland Lindh
- Department of Chemistry—BMC, Uppsala University, Box 576, 751 23 Uppsala, Sweden
| | - Máté Erdélyi
- Department of Chemistry—BMC, Uppsala University, Box 576, 751 23 Uppsala, Sweden
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12
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Synthesis and characterization of aryltellurium compounds including mixed-valence derivatives − evaluation of Te⋅⋅⋅S, Te⋅⋅⋅X and X⋅⋅⋅X (X = Br, I) interactions. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121553] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Halogen bonds and other noncovalent interactions in the crystal structures of trans-1,2-diiodo alkenes: an ab initio and QTAIM study. J Mol Model 2020; 26:331. [PMID: 33150494 DOI: 10.1007/s00894-020-04591-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 10/27/2020] [Indexed: 10/23/2022]
Abstract
A series of interatomic interactions interpretable as halogen bonds involving I…I, I…O, and I…C(π), as well as the noncovalent interactions I…H and O…O, were observed in the crystal structures of trans-1,2-diiodoolefins dimers according to ab initio calculations and the quantum theory of "atoms in molecules" (QTAIM) method. The interplay between each type of halogen bond and other noncovalent interactions was studied systematically in terms of bond length, electrostatic potential, and interaction energy, which are calculated via ab initio methods at the B3LYP-D3/6-311++G(d,p) and B3LYP-D3/def2-TZVP levels of theory. Characteristics and nature of the halogen bonds and other noncovalent interactions, including the topological properties of the electron density, the charge transfer, and their strengthening or weakening, were analyzed by means of both QTAIM and "natural bond order" (NBO). These computational methods provide additional insight into observed intermolecular interactions and are utilized to explain the differences seen in the crystal structures. Graphical abstract The contour map presents the regions of electronic concentration and depletion along each bond in one dimer. The blue points denote the BCPs. The blue lines denote positive Laplacian of electron density, which indicate the ionic interactions, van der Waals or intermolecular interactions, and the red lines denote negative Laplacian of electron density which indicate the covalent bonds.
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14
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Lindblad S, Németh FB, Földes T, Vanderkooy A, Pápai I, Erdélyi M. O-I-O halogen bond of halonium ions. Chem Commun (Camb) 2020; 56:9671-9674. [PMID: 32696769 DOI: 10.1039/d0cc03513k] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The reactivity of halonium ions is conveniently modulated by three-center, four-electron halogen bonds. Such stabilized halonium complexes are valuable reagents for oxidations and halofunctionalization reactions. We report the first example of the stabilization of a halenium ion in a three-center, four-electron halogen bond with two oxygen ligands. The influence of electron density and solvent on the stability of the complexes is assessed. O-I-O halogen bond complexes are applicable as synthetic reagents and as supramolecular synthons.
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Affiliation(s)
- Sofia Lindblad
- Department of Chemistry - BMC, Uppsala University, SE-751 23 Uppsala, Sweden.
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15
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Bol’shakov OI, Yushina ID, Stash AI, Aysin RR, Bartashevich EV, Rakitin OA. Structure and properties of 4-phenyl-5H-1,2,3-dithiazole-5-thione polyiodide with S−I+−S bridged complex. Struct Chem 2020. [DOI: 10.1007/s11224-020-01584-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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16
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Engelage E, Reinhard D, Huber SM. Is There a Single Ideal Parameter for Halogen-Bonding-Based Lewis Acidity? Chemistry 2020; 26:3843-3861. [PMID: 31943430 PMCID: PMC7154672 DOI: 10.1002/chem.201905273] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Indexed: 01/08/2023]
Abstract
Halogen-bond donors (halogen-based Lewis acids) have now found various applications in diverse fields of chemistry. The goal of this study was to identify a parameter obtainable from a single DFT calculation that reliably describes halogen-bonding strength (Lewis acidity). First, several DFT methods were benchmarked against the CCSD(T) CBS binding data of complexes of 17 carbon-based halogen-bond donors with chloride and ammonia as representative Lewis bases, which revealed M05-2X with a partially augmented def2-TZVP(D) basis set as the best model chemistry. The best single parameter to predict halogen-bonding strengths was the static σ-hole depth, but it still provided inaccurate predictions for a series of compounds. Thus, a more reliable parameter, Ωσ* , has been developed through the linear combination of the σ-hole depth and the σ*(C-I) energy, which was further validated against neutral, cationic, halogen- and nitrogen-based halogen-bond donors with very good performance.
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Affiliation(s)
- Elric Engelage
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
| | - Dominik Reinhard
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
| | - Stefan M. Huber
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
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17
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Ward JS, Fiorini G, Frontera A, Rissanen K. Asymmetric [N–I–N]+ halonium complexes. Chem Commun (Camb) 2020; 56:8428-8431. [PMID: 32579654 DOI: 10.1039/d0cc02758h] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The first examples of unrestrained asymmetric silver(i) and halonium complexes have been prepared and characterised.
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Affiliation(s)
- Jas S. Ward
- University of Jyvaskyla
- Department of Chemistry
- Jyväskylä 40014
- Finland
| | - Giorgia Fiorini
- University of Jyvaskyla
- Department of Chemistry
- Jyväskylä 40014
- Finland
| | - Antonio Frontera
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma de Mallorca (Baleares)
- Spain
| | - Kari Rissanen
- University of Jyvaskyla
- Department of Chemistry
- Jyväskylä 40014
- Finland
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18
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Abstract
Halonium ions are particularly strong halogen bond donors, and are accordingly valuable tools for a variety of fields, such as supramolecular and synthetic organic chemistry.
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Affiliation(s)
- Lotta Turunen
- Department of Chemistry – BMC
- Uppsala University
- SE-751 23 Uppsala
- Sweden
| | - Máté Erdélyi
- Department of Chemistry – BMC
- Uppsala University
- SE-751 23 Uppsala
- Sweden
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19
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Riel AMS, Rowe RK, Ho EN, Rappé AK, Berryman OB, Ho PS. Hydrogen Bond Enhanced Halogen Bonds: A Synergistic Interaction in Chemistry and Biochemistry. Acc Chem Res 2019; 52:2870-2880. [PMID: 31318520 PMCID: PMC7328900 DOI: 10.1021/acs.accounts.9b00189] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The halogen bond (XB) has become an important tool for molecular design in all areas of chemistry, including crystal and materials engineering and medicinal chemistry. Its similarity to the hydrogen bond (HB) makes the relationship between these interactions complex, at times competing against and other times orthogonal to each other. Recently, our two laboratories have independently reported and characterized a synergistic relationship, in which the XB is enhanced through direct intramolecular HBing to the electron-rich belt of the halogen. In one study, intramolecular HBing from an amine polarizes the iodopyridinium XB donors of a bidentate anion receptor. The resulting HB enhanced XB (or HBeXB) preorganizes and further augments the XB donors. Consequently, the affinity of the receptor for halogen anions was significantly increased. In a parallel study, a meta-chlorotyrosine was engineered into T4 lysozyme, resulting in a HBeXB that increased the thermal stability and activity of the enzyme at elevated temperatures. The crystal structure showed that the chlorine of the noncanonical amino acid formed a XB to the protein backbone, which augmented the HB of the wild-type enzyme. Calorimetric analysis resulted in an enthalpic contribution of this Cl-XB to the stability of the protein that was an order of magnitude greater than previously determined in biomolecules. Quantum mechanical (QM) calculations showed that rotating the hydroxyl group of the tyrosine to point toward rather than away from the halogen greatly increased its potential to serve as a XB donor, equivalent to what was observed experimentally. In sum, the two systems described here show that the HBeXB concept extends the range of interaction energies and geometries to be significantly greater than that of the XB alone. Additionally, surveys of structural databases indicate that the components for this interaction are already present in many existing molecular systems. The confluence of the independent studies from our two laboratories demonstrates the reach of the HBeXB across both chemistry and biochemistry and that intentional engineering of this enhanced interaction will extend the applications of XBs beyond these two initial examples.
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Affiliation(s)
- Asia Marie S. Riel
- Department of Chemistry & Biochemistry, University of Montana, Missoula, MT
| | - Rhianon K. Rowe
- Department of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO
| | - Ethan N. Ho
- Department of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO
| | - A. K. Rappé
- Department of Chemistry, Colorado State University, Fort Collins, CO
| | - Orion B. Berryman
- Department of Chemistry & Biochemistry, University of Montana, Missoula, MT
| | - P. Shing Ho
- Department of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO
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20
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Kaźmierczak M, Katrusiak A. The shortest chalcogen...halogen contacts in molecular crystals. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2019; 75:865-869. [PMID: 32830766 DOI: 10.1107/s2052520619011004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 08/07/2019] [Indexed: 06/11/2023]
Abstract
The survey of the shortest contacts in structures deposited in the Cambridge Structural Database shows that chalcogen...halogen, halogen...halogen and chalcogen...chalcogen interactions can compete as cohesion forces in molecular crystals. The smallest parameter δ (defined as the interatomic distance minus the sum of relevant van der Waals radii) for Ch...X contacts between chalcogens (Ch: S, Se) and halogens (X: F, Cl, Br, I) is present only in 0.86% out of 30 766 deposited structures containing these atoms. Thus, in less than 1% of these structures can the Ch...X forces be considered as the main type of cohesion forces responsible for the molecular arrangement. Among the 263 structures with the shortest Ch...X contact, there are four crystals where no contacts shorter than the sums of van der Waals radii are present (so-called loose crystals). The smallest δ criterion has been used for distinguishing between the bonding (covalent bond) and non-bonding contacts and for validating the structural models of crystals.
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Affiliation(s)
- Michał Kaźmierczak
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznan, 61-614, Poland
| | - Andrzej Katrusiak
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznan, 61-614, Poland
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Lindblad S, Mehmeti K, Veiga AX, Nekoueishahraki B, Gräfenstein J, Erdélyi M. Halogen Bond Asymmetry in Solution. J Am Chem Soc 2018; 140:13503-13513. [PMID: 30234293 PMCID: PMC6209183 DOI: 10.1021/jacs.8b09467] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Halogen bonding is the noncovalent interaction of halogen atoms in which they act as electron acceptors. Whereas three-center hydrogen bond complexes, [D···H···D]+ where D is an electron donor, exist in solution as rapidly equilibrating asymmetric species, the analogous halogen bonds, [D···X···D]+, have been observed so far only to adopt static and symmetric geometries. Herein, we investigate whether halogen bond asymmetry, i.e., a [D-X···D]+ bond geometry, in which one of the D-X bonds is shorter and stronger, could be induced by modulation of electronic or steric factors. We have also attempted to convert a static three-center halogen bond complex into a mixture of rapidly exchanging asymmetric isomers, [D···X-D]+ ⇄ [D-X···D]+, corresponding to the preferred form of the analogous hydrogen bonded complexes. Using 15N NMR, IPE NMR, and DFT, we prove that a static, asymmetric geometry, [D-X···D]+, is obtained upon desymmetrization of the electron density of a complex. We demonstrate computationally that conversion into a dynamic mixture of asymmetric geometries, [D···X-D]+ ⇄ [D-X···D]+, is achievable upon increasing the donor-donor distance. However, due to the high energetic gain upon formation of the three-center-four-electron halogen bond, the assessed complex strongly prefers to form a dimer with two static and symmetric three-center halogen bonds over a dynamic and asymmetric halogen bonded form. Our observations indicate a vastly different preference in the secondary bonding of H+ and X+. Understanding the consequences of electronic and steric influences on the strength and geometry of the three-center halogen bond provides useful knowledge on chemical bonding and for the development of improved halonium transfer agents.
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Affiliation(s)
- Sofia Lindblad
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden.,Department of Chemistry - BMC , Uppsala University , SE-751 23 Uppsala , Sweden
| | - Krenare Mehmeti
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden
| | - Alberte X Veiga
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden
| | - Bijan Nekoueishahraki
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden
| | - Jürgen Gräfenstein
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden
| | - Máté Erdélyi
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden.,Department of Chemistry - BMC , Uppsala University , SE-751 23 Uppsala , Sweden.,The Swedish NMR Centre , Medicinaregatan 5C , SE-413 90 Gothenburg , Sweden
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Abstract
Abstract
The halogen bond, corresponding to an attractive interaction between an electrophilic region in a halogen (X) and a nucleophile (B) yielding a R−X⋯B contact, found applications in many fields such as supramolecular chemistry, crystal engineering, medicinal chemistry, and chemical biology. Their large range of applications also led to an increased interest in their study using computational methods aiming not only at understanding the phenomena at a fundamental level, but also to help in the interpretation of results and guide the experimental work. Herein, a succinct overview of the recent theoretical and experimental developments is given starting by discussing the nature of the halogen bond and the latest theoretical insights on this topic. Then, the effects of the surrounding environment on halogen bonds are presented followed by a presentation of the available method benchmarks. Finally, recent experimental applications where the contribution of computational chemistry was fundamental are discussed, thus highlighting the synergy between the lab and modeling techniques.
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Turunen L, Warzok U, Schalley CA, Rissanen K. Nano-sized I12L6 Molecular Capsules Based on the [N⋅⋅⋅I+⋅⋅⋅N] Halogen Bond. Chem 2017. [DOI: 10.1016/j.chempr.2017.08.010] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Wang C, Danovich D, Shaik S, Mo Y. Halogen Bonds in Novel Polyhalogen Monoanions. Chemistry 2017; 23:8719-8728. [DOI: 10.1002/chem.201701116] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Changwei Wang
- College of Science; China University of Petroleum (East China); Changjiangxi Road 66 266580 Tsingtao P. R. China
| | - David Danovich
- Institute of Chemistry and Lise Meitner Minerva Center for Computational Quantum Chemistry; The Hebrew University; Jerusalem 91904 Israel
| | - Sason Shaik
- Institute of Chemistry and Lise Meitner Minerva Center for Computational Quantum Chemistry; The Hebrew University; Jerusalem 91904 Israel
| | - Yirong Mo
- Department of Chemistry; Western Michigan University; Kalamazoo MI 49008 USA
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Turunen L, Warzok U, Puttreddy R, Beyeh NK, Schalley CA, Rissanen K. [N⋅⋅⋅I+
⋅⋅⋅N] Halogen-Bonded Dimeric Capsules from Tetrakis(3-pyridyl)ethylene Cavitands. Angew Chem Int Ed Engl 2016; 55:14033-14036. [DOI: 10.1002/anie.201607789] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Indexed: 12/29/2022]
Affiliation(s)
- Lotta Turunen
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
| | - Ulrike Warzok
- Institut für Chemie und Biochemie der; Freien Universität Berlin; Takustrasse 3 14195 Berlin Germany
| | - Rakesh Puttreddy
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
| | - Ngong Kodiah Beyeh
- Aalto University; School of Science; Department of Applied Physics; Puumiehenkuja 2, FI- 02150 Espoo Finland
| | - Christoph A. Schalley
- Institut für Chemie und Biochemie der; Freien Universität Berlin; Takustrasse 3 14195 Berlin Germany
| | - Kari Rissanen
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
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Turunen L, Warzok U, Puttreddy R, Beyeh NK, Schalley CA, Rissanen K. [N⋅⋅⋅I+
⋅⋅⋅N] Halogen-Bonded Dimeric Capsules from Tetrakis(3-pyridyl)ethylene Cavitands. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607789] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Lotta Turunen
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
| | - Ulrike Warzok
- Institut für Chemie und Biochemie der; Freien Universität Berlin; Takustrasse 3 14195 Berlin Germany
| | - Rakesh Puttreddy
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
| | - Ngong Kodiah Beyeh
- Aalto University; School of Science; Department of Applied Physics; Puumiehenkuja 2, FI- 02150 Espoo Finland
| | - Christoph A. Schalley
- Institut für Chemie und Biochemie der; Freien Universität Berlin; Takustrasse 3 14195 Berlin Germany
| | - Kari Rissanen
- Department of Chemistry; NanoScience Center; University of Jyvaskyla; P.O. Box 35, FI- 40014 Jyvaskyla Finland
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Puttreddy R, Jurček O, Bhowmik S, Mäkelä T, Rissanen K. Very strong (-)N-X(+)(-)O-N(+) halogen bonds. Chem Commun (Camb) 2016; 52:2338-41. [PMID: 26728962 DOI: 10.1039/c5cc09487a] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new (-)N-X(+)(-)O-N(+) paradigm for halogen bonding is established by using an oxygen atom as an unusual halogen bond acceptor. The strategy yielded extremely strong halogen bonded complexes with very high association constants characterized in either CDCl3 or acetone-d6 solution by (1)H NMR titrations and in the solid-state by single crystal X-ray analysis. The obtained halogen bond interactions, RXB, in the solid-state are found to be in the order of strong hydrogen bonds, viz. RXB ≈ RHB.
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Affiliation(s)
- Rakesh Puttreddy
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, FI-40014 University of Jyvaskyla, Finland.
| | - Ondřej Jurček
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, FI-40014 University of Jyvaskyla, Finland.
| | - Sandip Bhowmik
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, FI-40014 University of Jyvaskyla, Finland.
| | - Toni Mäkelä
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, FI-40014 University of Jyvaskyla, Finland.
| | - Kari Rissanen
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, FI-40014 University of Jyvaskyla, Finland.
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Suponitsky KY, Burakov NI, Kanibolotsky AL, Mikhailov VA. Multiple Noncovalent Bonding in Halogen Complexes with Oxygen Organics. I. Tertiary Amides. J Phys Chem A 2016; 120:4179-90. [PMID: 27228362 DOI: 10.1021/acs.jpca.6b02192] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The present work describes the structure and binding of adducts of N,N'-diacetylpiperazine with halogens and interhalogens based on combination of different experimental methods and quantum chemical calculations. On the basis of conductometric and spectro-photometric experimental results, behavior of complexes in the acetonitrile solution was described. The iodine adduct with N,N'-diacetylpiperazine fully degrades into components. Adducts of interhalogens I-X (X = Cl or Br) with N,N'-diacetylpiperazine in acetonitrile partially dissociate to anionic [X-I-X](-) and cationic species. In the solid state, molecules are connected via C═O···I, C-H···I, and Cl···Cl attractive interactions. N,N'-diacetylpiperazine···dihalogen complex is stabilized by simultaneous C═O···I and C-H···I interactions. Such binding mode allows to explain the problems of the direct halogenation of acetyl-containing compounds with molecular halogens as reagents. We believe that the observed binding pattern can be used as prototypical for future design of halogeno complexes.
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Affiliation(s)
- Kyrill Yu Suponitsky
- X-ray Structural Centre, A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences , 28 Vavilov Street, Moscow 119991, Russia
| | - N I Burakov
- L. M. Litvinenko Institute of Physical Organic and Coal Chemistry , R. Luxemburg Street 70, 83114 Donetsk, Ukraine
| | - Alexander L Kanibolotsky
- L. M. Litvinenko Institute of Physical Organic and Coal Chemistry , R. Luxemburg Street 70, 83114 Donetsk, Ukraine.,WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde , 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
| | - Vasilii A Mikhailov
- L. M. Litvinenko Institute of Physical Organic and Coal Chemistry , R. Luxemburg Street 70, 83114 Donetsk, Ukraine
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Abstract
The halogen bond occurs when there is evidence of a net attractive interaction between an electrophilic region associated with a halogen atom in a molecular entity and a nucleophilic region in another, or the same, molecular entity. In this fairly extensive review, after a brief history of the interaction, we will provide the reader with a snapshot of where the research on the halogen bond is now, and, perhaps, where it is going. The specific advantages brought up by a design based on the use of the halogen bond will be demonstrated in quite different fields spanning from material sciences to biomolecular recognition and drug design.
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Affiliation(s)
- Gabriella Cavallo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Pierangelo Metrangolo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Roberto Milani
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Tullio Pilati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Arri Priimagi
- Department
of Chemistry and Bioengineering, Tampere
University of Technology, Korkeakoulunkatu 8, FI-33101 Tampere, Finland
| | - Giuseppe Resnati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Giancarlo Terraneo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
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Sinnwell MA, MacGillivray LR. Halogen‐Bond‐Templated [2+2] Photodimerization in the Solid State: Directed Synthesis and Rare Self‐Inclusion of a Halogenated Product. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201510912] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Michael A. Sinnwell
- Department of Chemistry University of Iowa E555 Chemistry Building Iowa City IA 52242 USA
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Sinnwell MA, MacGillivray LR. Halogen‐Bond‐Templated [2+2] Photodimerization in the Solid State: Directed Synthesis and Rare Self‐Inclusion of a Halogenated Product. Angew Chem Int Ed Engl 2016; 55:3477-80. [DOI: 10.1002/anie.201510912] [Citation(s) in RCA: 97] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Indexed: 11/11/2022]
Affiliation(s)
- Michael A. Sinnwell
- Department of Chemistry University of Iowa E555 Chemistry Building Iowa City IA 52242 USA
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Bedin M, Karim A, Reitti M, Carlsson ACC, Topić F, Cetina M, Pan F, Havel V, Al-Ameri F, Sindelar V, Rissanen K, Gräfenstein J, Erdélyi M. Counterion influence on the N-I-N halogen bond. Chem Sci 2015; 6:3746-3756. [PMID: 29218144 PMCID: PMC5707496 DOI: 10.1039/c5sc01053e] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Accepted: 04/20/2015] [Indexed: 12/13/2022] Open
Abstract
A detailed investigation of the influence of counterions on the [N-I-N]+ halogen bond in solution, in the solid state and in silico is presented. Translational diffusion coefficients indicate close attachment of counterions to the cationic, three-center halogen bond in dichloromethane solution. Isotopic perturbation of equilibrium NMR studies performed on isotopologue mixtures of regioselectively deuterated and nondeuterated analogues of the model system showed that the counterion is incapable of altering the symmetry of the [N-I-N]+ halogen bond. This symmetry remains even in the presence of an unfavorable geometric restraint. A high preference for the symmetric geometry was found also in the solid state by single crystal X-ray crystallography. Molecular systems encompassing weakly coordinating counterions behave similarly to the corresponding silver(i) centered coordination complexes. In contrast, systems possessing moderately or strongly coordinating anions show a distinctly different behavior. Such silver(i) complexes are converted into multi-coordinate geometries with strong Ag-O bonds, whereas the iodine centered systems remain linear and lack direct charge transfer interaction with the counterion, as verified by 15N NMR and DFT computation. This suggests that the [N-I-N]+ halogen bond may not be satisfactorily described in terms of a pure coordination bond typical of transition metal complexes, but as a secondary bond with a substantial charge-transfer character.
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Affiliation(s)
- Michele Bedin
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Alavi Karim
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Marcus Reitti
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Anna-Carin C Carlsson
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Filip Topić
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P.O. Box. 35, FI-40014 University of Jyvaskyla , Finland
| | - Mario Cetina
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P.O. Box. 35, FI-40014 University of Jyvaskyla , Finland
- Department of Applied Chemistry , Faculty of Textile Technology , University of Zagreb , Prilaz baruna Filipovića 28a , HR-10000 Zagreb , Croatia
| | - Fangfang Pan
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P.O. Box. 35, FI-40014 University of Jyvaskyla , Finland
| | - Vaclav Havel
- Department of Chemistry and RECETOX , Masaryk University , Kamenice 5 , 625 00 Brno , Czech Republic
| | - Fatima Al-Ameri
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Vladimir Sindelar
- Department of Chemistry and RECETOX , Masaryk University , Kamenice 5 , 625 00 Brno , Czech Republic
| | - Kari Rissanen
- University of Jyvaskyla , Department of Chemistry , Nanoscience Center , P.O. Box. 35, FI-40014 University of Jyvaskyla , Finland
| | - Jürgen Gräfenstein
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
| | - Máté Erdélyi
- Department of Chemistry and Molecular Biology , University of Gothenburg , SE-412 96 Gothenburg , Sweden . ; Tel: +46-31-786 9033
- The Swedish NMR Centre , Medicinaregatan 5 , SE-413 90 Gothenburg , Sweden
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Beyeh NK, Pan F, Rissanen K. A Halogen-Bonded Dimeric Resorcinarene Capsule. Angew Chem Int Ed Engl 2015; 54:7303-7. [PMID: 25950656 DOI: 10.1002/anie.201501855] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Revised: 04/16/2015] [Indexed: 11/09/2022]
Abstract
Iodine (I2) acts as a bifunctional halogen-bond donor connecting two macrocyclic molecules of the bowl-shaped halogen-bond acceptor, N-cyclohexyl ammonium resorcinarene chloride 1, to form the dimeric capsule [(1,4-dioxane)3@1(2)(I2)2]. The dimeric capsule is constructed solely through halogen bonds and has a single cavity (V=511 Å(3)) large enough to encapsulate three 1,4-dioxane guest molecules.
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Affiliation(s)
- Ngong Kodiah Beyeh
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, 40014 University of Jyvaskyla (Finland).
| | - Fangfang Pan
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, 40014 University of Jyvaskyla (Finland)
| | - Kari Rissanen
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box. 35, 40014 University of Jyvaskyla (Finland).
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Koskinen L, Hirva P, Hasu A, Jääskeläinen S, Koivistoinen J, Pettersson M, Haukka M. Modification of the supramolecular structure of [(thione)IY] (Y = Cl, Br) systems by cooperation of strong halogen bonds and hydrogen bonds. CrystEngComm 2015. [DOI: 10.1039/c4ce02449d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Strong halogen bonds and hydrogen bonds cooperated to control the supramolecular structures of [(thione)IY] (Y = Cl, Br) compounds.
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Affiliation(s)
- L. Koskinen
- Department of Chemistry
- University of Eastern Finland
- FI-80101 Joensuu, Finland
| | - P. Hirva
- Department of Chemistry
- University of Eastern Finland
- FI-80101 Joensuu, Finland
| | - A. Hasu
- Department of Chemistry
- University of Eastern Finland
- FI-80101 Joensuu, Finland
| | - S. Jääskeläinen
- Department of Chemistry
- University of Eastern Finland
- FI-80101 Joensuu, Finland
| | - J. Koivistoinen
- Department of Chemistry
- Nanoscience Center
- University of Jyväskylä
- FI-40014 Jyväskylä, Finland
| | - M. Pettersson
- Department of Chemistry
- Nanoscience Center
- University of Jyväskylä
- FI-40014 Jyväskylä, Finland
| | - M. Haukka
- Department of Chemistry
- University of Jyväskylä
- FI-40014 Jyväskylä, Finland
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