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Number Cited by Other Article(s)
1
Zhou X, Huang Z, He X. Diffusion Monte Carlo method for barrier heights of multiple proton exchanges and complexation energies in small water, ammonia, and hydrogen fluoride clusters. J Chem Phys 2024;160:054103. [PMID: 38310472 DOI: 10.1063/5.0182164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 01/09/2024] [Indexed: 02/05/2024]  Open
2
Novotný M, Dubecký M, Karlický F. Toward accurate modeling of structure and energetics of bulk hexagonal boron nitride. J Comput Chem 2024;45:115-121. [PMID: 37737623 DOI: 10.1002/jcc.27222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 08/17/2023] [Accepted: 08/25/2023] [Indexed: 09/23/2023]
3
Kolesár V, Dubecký M. Accuracy of Noncovalent Interactions Involving d-Elements by the 1-Determinant Fixed-Node Diffusion Monte Carlo Method with Effective Core Potentials. J Chem Theory Comput 2023;19:1170-1176. [PMID: 36751996 DOI: 10.1021/acs.jctc.2c00872] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
4
Adsorption of atomic and molecular monolayers on Pt-supported graphene. Chem Phys 2022. [DOI: 10.1016/j.chemphys.2022.111713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
5
Prayogo GI, Shin H, Benali A, Maezono R, Hongo K. Importance of Van der Waals Interactions in Hydrogen Adsorption on a Silicon-carbide Nanotube Revisited with vdW-DFT and Quantum Monte Carlo. ACS OMEGA 2021;6:24630-24636. [PMID: 34604645 PMCID: PMC8482461 DOI: 10.1021/acsomega.1c03318] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
6
Ballesteros F, Dunivan S, Lao KU. Coupled cluster benchmarks of large noncovalent complexes: The L7 dataset as well as DNA-ellipticine and buckycatcher-fullerene. J Chem Phys 2021;154:154104. [PMID: 33887937 DOI: 10.1063/5.0042906] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
7
Fanta R, Dubecký M. Noncovalent Interactions by the Quantum Monte Carlo Method: Strong Influence of Isotropic Jastrow Cutoff Radii. J Chem Theory Comput 2021;17:4242-4249. [PMID: 34169721 DOI: 10.1021/acs.jctc.1c00467] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
8
Scemama A, Giner E, Benali A, Loos PF. Taming the fixed-node error in diffusion Monte Carlo via range separation. J Chem Phys 2020;153:174107. [DOI: 10.1063/5.0026324] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
9
Qin KS, Ichibha T, Hongo K, Maezono R. Inconsistencies in ab initio evaluations of non-additive contributions of DNA stacking energies. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110554] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
10
Klimeš J, Tew DP. Efficient and accurate description of adsorption in zeolites. J Chem Phys 2019;151:234108. [PMID: 31864262 DOI: 10.1063/1.5123425] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
11
Zhou X, Wang F. Singlet-triplet gaps in diradicals obtained with diffusion quantum Monte Carlo using a Slater-Jastrow trial wavefunction with a minimum number of determinants. Phys Chem Chem Phys 2019;21:20422-20431. [PMID: 31501831 DOI: 10.1039/c9cp03045j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
12
Yang DC, Kim DY, Kim KS. Quantum Monte Carlo Study of the Water Dimer Binding Energy and Halogen-π Interactions. J Phys Chem A 2019;123:7785-7791. [PMID: 31418568 DOI: 10.1021/acs.jpca.9b04072] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
13
Dubecký M, Jurečka P, Mitas L, Ditte M, Fanta R. Toward Accurate Hydrogen Bonds by Scalable Quantum Monte Carlo. J Chem Theory Comput 2019;15:3552-3557. [DOI: 10.1021/acs.jctc.9b00096] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
14
Wineman-Fisher V, Al-Hamdani Y, Addou I, Tkatchenko A, Varma S. Ion-Hydroxyl Interactions: From High-Level Quantum Benchmarks to Transferable Polarizable Force Fields. J Chem Theory Comput 2019;15:2444-2453. [PMID: 30830778 PMCID: PMC6598712 DOI: 10.1021/acs.jctc.8b01198] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
15
Ospadov E, Rothstein SM, Baer R. Quantum Monte Carlo assessment of density functionals for π-electron molecules: ethylene and bifuran. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1517905] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
16
Song S, Kim MC, Sim E, Benali A, Heinonen O, Burke K. Benchmarks and Reliable DFT Results for Spin Gaps of Small Ligand Fe(II) Complexes. J Chem Theory Comput 2018;14:2304-2311. [DOI: 10.1021/acs.jctc.7b01196] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
17
Kesharwani MK, Karton A, Sylvetsky N, Martin JML. The S66 Non-Covalent Interactions Benchmark Reconsidered Using Explicitly Correlated Methods Near the Basis Set Limit. Aust J Chem 2018. [DOI: 10.1071/ch17588] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
18
Hongo K, Maezono R. A Computational Scheme To Evaluate Hamaker Constants of Molecules with Practical Size and Anisotropy. J Chem Theory Comput 2017;13:5217-5230. [PMID: 28981266 DOI: 10.1021/acs.jctc.6b01159] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Dubecký M. Noncovalent Interactions by Fixed-Node Diffusion Monte Carlo: Convergence of Nodes and Energy Differences vs Gaussian Basis-Set Size. J Chem Theory Comput 2017;13:3626-3635. [DOI: 10.1021/acs.jctc.7b00537] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
Manna D, Kesharwani MK, Sylvetsky N, Martin JML. Conventional and Explicitly Correlated ab Initio Benchmark Study on Water Clusters: Revision of the BEGDB and WATER27 Data Sets. J Chem Theory Comput 2017;13:3136-3152. [DOI: 10.1021/acs.jctc.6b01046] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
21
Krongchon K, Busemeyer B, Wagner LK. Accurate barrier heights using diffusion Monte Carlo. J Chem Phys 2017;146:124129. [DOI: 10.1063/1.4979059] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Dubecký M. Bias cancellation in one-determinant fixed-node diffusion Monte Carlo: Insights from fermionic occupation numbers. Phys Rev E 2017;95:033308. [PMID: 28415179 DOI: 10.1103/physreve.95.033308] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Indexed: 06/07/2023]
23
Zhou X, Wang F. Barrier heights of hydrogen-transfer reactions with diffusion quantum monte carlo method. J Comput Chem 2017;38:798-806. [DOI: 10.1002/jcc.24750] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Revised: 01/11/2017] [Accepted: 01/13/2017] [Indexed: 01/17/2023]
24
Wu Y, Wagner LK, Aluru NR. Hexagonal boron nitride and water interaction parameters. J Chem Phys 2017;144:164118. [PMID: 27131542 DOI: 10.1063/1.4947094] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
25
Noncovalent Interactions by QMC: Speedup by One-Particle Basis-Set Size Reduction. ACTA ACUST UNITED AC 2016. [DOI: 10.1021/bk-2016-1234.ch008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
26
Fumanal M, Wagner LK, Sanvito S, Droghetti A. Diffusion Monte Carlo Perspective on the Spin-State Energetics of [Fe(NCH)6](2.). J Chem Theory Comput 2016;12:4233-41. [PMID: 27500854 DOI: 10.1021/acs.jctc.6b00332] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
27
Vibrational and ab initio molecular dynamics studies of bradykinin. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.03.041] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
28
Dubecký M, Mitas L, Jurečka P. Noncovalent Interactions by Quantum Monte Carlo. Chem Rev 2016;116:5188-215. [DOI: 10.1021/acs.chemrev.5b00577] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
29
Frey JA, Holzer C, Klopper W, Leutwyler S. Experimental and Theoretical Determination of Dissociation Energies of Dispersion-Dominated Aromatic Molecular Complexes. Chem Rev 2016;116:5614-41. [DOI: 10.1021/acs.chemrev.5b00652] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
30
Trouillas P, Sancho-García JC, De Freitas V, Gierschner J, Otyepka M, Dangles O. Stabilizing and Modulating Color by Copigmentation: Insights from Theory and Experiment. Chem Rev 2016;116:4937-82. [PMID: 26959943 DOI: 10.1021/acs.chemrev.5b00507] [Citation(s) in RCA: 299] [Impact Index Per Article: 37.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
31
Localized Polycentric Orbital Basis Set for Quantum Monte Carlo Calculations Derived from the Decomposition of Kohn-Sham Optimized Orbitals. COMPUTATION 2016. [DOI: 10.3390/computation4010010] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
32
Gasperich K, Jordan KD. Diffusion Monte Carlo Study of the Parallel Displaced Form of the Benzene Dimer. ACS SYMPOSIUM SERIES 2016. [DOI: 10.1021/bk-2016-1234.ch007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
33
Shulenburger L, Baczewski AD, Zhu Z, Guan J, Tománek D. The Nature of the Interlayer Interaction in Bulk and Few-Layer Phosphorus. NANO LETTERS 2015;15:8170-5. [PMID: 26523860 DOI: 10.1021/acs.nanolett.5b03615] [Citation(s) in RCA: 123] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
34
Pichugina DA, Kuz'menko NE, Shestakov AF. Ligand-protected gold clusters: the structure, synthesis and applications. RUSSIAN CHEMICAL REVIEWS 2015. [DOI: 10.1070/rcr4493] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
35
Řezáč J, Dubecký M, Jurečka P, Hobza P. Extensions and applications of the A24 data set of accurate interaction energies. Phys Chem Chem Phys 2015;17:19268-77. [PMID: 26139028 DOI: 10.1039/c5cp03151f] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
36
de Lara-Castells MP, Mitrushchenkov AO, Stoll H. Combining density functional and incremental post-Hartree-Fock approaches for van der Waals dominated adsorbate-surface interactions: Ag2/graphene. J Chem Phys 2015;143:102804. [DOI: 10.1063/1.4919397] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
37
Wu Y, Wagner LK, Aluru NR. The interaction between hexagonal boron nitride and water from first principles. J Chem Phys 2015;142:234702. [DOI: 10.1063/1.4922491] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
38
Silkowski M, Lesiuk M, Moszynski R. Calculation of the molecular integrals with the range-separated correlation factor. J Chem Phys 2015;142:124102. [DOI: 10.1063/1.4915272] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
39
Kocman M, Jurečka P, Dubecký M, Otyepka M, Cho Y, Kim KS. Choosing a density functional for modeling adsorptive hydrogen storage: reference quantum mechanical calculations and a comparison of dispersion-corrected density functionals. Phys Chem Chem Phys 2015;17:6423-32. [DOI: 10.1039/c4cp04354e] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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