Zinc complexes as fluorescent chemosensors for nucleic acids: new perspectives for a "boring" element

Pyridine appended pyrimidine bis hydrazone: Zn2+/ATP detection, bioimaging and functional properties of its dinuclear Zn(II) complex

A pyridine functionalized pyrimidine-based system, H2P was successfully synthesized, characterized, and evaluated for its remarkable selective characteristics towards Zn2+ and ATP ions. The chemical sensing capabilities of H2P were demonstrated through absorption, fluorescence, and NMR spectroscopic techniques. The probe exhibited outstanding sensitivity when interacting with the ions, demonstrating relatively strong association constants and impressively low detection limits. The comprehensive binding mechanism of H2P with respect to Zn2+ and ATP ions was investigated using a combination of analytical methods, including Job's plot, NMR spectroscopy, mass spectrometry, and density functional theory (DFT) experiments. The interesting sensing ability of H2P for Zn2+/ATP ions was harnessed for live cell bioimaging and other diverse on-site detection purposes, including paper strips, cotton swabs, and applications involving mung bean sprouts. Further, the fluorescent probe demonstrated its effectiveness in detecting Zn2+ and ATP within live cells, indicating its significant potential in the realm of biological imaging applications. Moreover, the molecular configuration of the zinc complex (H2P-Zn2Cl4), derived from H2P, was elucidated using X-ray crystallography. This complex exhibited intriguing multifunctional attributes, encompassing its capability for detecting picric acid and for reversible acid/base sensing responses. The enhanced conducting behavior of the complex as well as its resistance properties were investigated by performing I-V characteristics and electrochemical impedance spectroscopic (EIS) experiments respectively.

Efficient emission of Zn(II) and Cd(II) complexes with nopinane-annelated 4,5-diazafluorene and 4,5-diazafluoren-9-one ligands: how slight structural modification alters fluorescence mechanism

Zinc(II) and cadmium(II) chlorido complexes with an N,N-chelating nopinane-annelated 4,5-diazafluoren-9-one ligand (LO) were synthesized. While the zinc(II) complex is mononuclear and adopts a tetrahedral ZnN₂Cl₂ coordination geometry, its cadmium(II) analogue features a 1D polymeric structure due to the bridging coordination of chlorido ligands with Cd²⁺ ions having an octahedral CdN₂Cl₄ coordination geometry. The photophysical properties of the oxygen-containing LO ligand and its zinc(II) and cadmium(II) complexes were studied in solution and in the solid state and matched against the properties of its oxygen-free 4,5-diazafluorene congener L and its complexes of the same metal ions. Comprehensive experimental and theoretical studies revealed the impact of the oxygen atom in the ligand core on the luminescence of the ligands and the complexes. For the oxygen-free L ligand and L-based complexes, the structural differences between the S₀ and S₁ geometries are small, which leads to fluorescence with extraordinarily small Stokes shifts. The emission of these compounds is of locally excited character for L and of mixed locally excited + ligand-to-halide charge transfer character for the L-based complexes. The introduction of the oxygen atom in the ligand core results in a drastic red-shift of the emission band due to short-range charge transfer. The differences between the S₀ and S₁ geometries are much more pronounced for LO and LO-based compounds than those of their oxygen-free analogues, leading to an order of magnitude larger Stokes shifts. On going from solution to the solid state, LO and its complexes exhibit aggregation-induced emission (AIE) behaviour with photoluminescence quantum yields (PLQYs) reaching tens of percent.

Salphen metal complexes as potential anticancer agents: interaction profile and selectivity studies toward the three G-quadruplex units in the KIT promoter

DNA G-rich sequences can organize in four-stranded structures called G-quadruplexes (G4s). These motifs are enriched in significant sites within the human genomes, including telomeres and promoters of cancer related genes. For instance, KIT proto-oncogene promoter, associated with diverse cancers, contains three adjacent G4 units, namely Kit2, SP, and Kit1. Aiming at finding new and selective G-quadruplex binders, we have synthesized and characterized five non-charged metal complexes of Pt(II), Pd(II), Ni(II), Cu(II) and Zn(II) of a chlorine substituted Salphen ligand. The crystal structure of the Pt(II) and Pd(II) complexes was determined by XRPD. FRET measurements indicated that Pt(II) and Pd(II) compounds stabilize Kit1 and Kit2 G4s but not SP, telomeric and double stranded DNA. Spectroscopic investigations (UV-Vis, circular dichroism and fluorescence) suggested the Cu(II) complex as the most G4-selective compound. Interestingly, docking simulations indicate that the synthesized compounds fit groove binding pockets of both Kit1 and Kit2 G4s. Moreover, they exhibited dose-dependent cytotoxic activity in MCF-7, HepG2 and HeLa cancer cells.

Synthesis of (Tricyanofuran-3-ylmethylene)hydrazinyl thiazole-containing chromophore, study of its photophysical properties, solvatochromism and TD-DFT computations

The chromophore 2-2-(3-cyano-5,5-dimethyl-4-((2-(thiazol-2-yl)hydrazono)methyl)-furan-2(5H)-ylidene)malononitrile (TzHTCF) was prepared by diazo-coupling of diazotized 2-aminothiazole with 3-cyano-2-(dicyanomethylene)-4,5,5-trimethylfuran (TCF). The TzHTCF absorption solvatochromism, in different polarity solvents, offered ΔE_max = +4.74 where the positive sign implied red shift occurrence and the TzHTCF lowest excited state was more polar than its ground one. While, the TzHTCF fluorescence spectrum afforded λ_em , in 416-670 nm range, and was more dependent on the solvent polarity than the absorption λ_max , despite both exhibited red shift by 24 and 254 nm, respectively. To discover the Stokes' shift ( ∆ ν ¯ ) behaviour of TzHTCF derivative, Lippert-Mataga and linear solvation-energy relationship (LSER) formulations have been utilized where the LSER displayed better results than the Lippert-Mataga (R² = 0. 9931). Furthermore, the LSER showed that the absorption and fluorescence solvatochromic behaviours were dependent on the solvent's hydrogen-bond donor (α) and acceptor (β), along with the solvent's polarizability (π*). Moreover, DFT calculations showed that TzHTCF has a planar configuration and its simulated absorption and emission spectra in DMSO revealed that λ_max was primarily originated from HOMO→LUMO and HOMO-1→LUMO transitions, respectively.

Deaggregation properties and transmetalation studies of a zinc(II) salen-type Schiff-base complex

This paper reports the synthesis and the deaggregation properties of a Lewis acidic Zn(II) salen-type Schiff-base complex derivative from diaminomaleonitrile and a systematic detailed study of its transmetalation with other metal ions in solution. In a solution of non-coordinating solvents, the complex is in a dimeric form, while in coordinating solvents or upon addition of a Lewis base it is stabilized as monomeric adducts. Experiments done in two solvents with different Lewis basicities indicate a major role of the stability of the starting adduct in transmetalation. Thus, using nitrate or perchlorate salts, acetonitrile solutions of the complex give an immediate and complete transmetalation with Cu²⁺, while with Co²⁺ and Ni²⁺ a much slower transmetalation rate is observed. Instead, using chloride salts a fast and complete transmetalation is observed for divalent ions of the first transition series (Mn²⁺, Fe²⁺, Co²⁺, Ni²⁺, Cu²⁺), indicating the role of the chloride in stabilizing the transition state of the transmetalation. On the other hand, DMF solutions of the complex are less prone to transmetalation, according with the greater basicity of the solvent and, hence, the greater stability of the related adducts with the complex. Therefore, the nature of the solvent and the counteranion allow controlling the transmetalation process of this Zn(II) Schiff-base complex.

Sign control of circularly polarized luminescence of chiral Schiff-base Zn(II) complexes through coordination geometry changes

The handedness of circularly polarized luminescence (CPL) of Zn(II) complexes with a chiral Schiff-base ligand can be controlled by coordination geometry changes in solution and in the solid state. The relationships between molecular structure and chiroptical properties were discussed with the results of X-ray diffraction analysis and DFT calculations.

Thermo-Induced Fluorochromism in Two AIE Zinc Complexes: A Deep Insight into the Structure-Property Relationship

Solid-state emitters exhibiting mechano-fluorochromic or thermo-fluorochromic responses represent the foundation of smart tools for novel technological applications. Among fluorochromic (FC) materials, solid-state emissive coordination complexes offer a variety of fluorescence responses related to the dynamic of noncovalent metal-ligand coordination bonds. Relevant FC behaviour can result from the targeted choice of metal cation and ligands. Herein, we report the synthesis and characterization of two different colour emitters consisting of zinc complexes obtained from N,O bidentate ligands with different electron-withdrawing substituents. The two complexes are blue and orange solid-state fluorophores, respectively, highly responsive to thermal and mechanical stress. These emitters show a very different photoluminescent (PL) pattern as recorded before and after the annealing treatment. Through X-ray structural analysis combined with thermal analysis, infrared (IR) spectroscopy, PL, and DFT simulation we provide a comprehensive analysis of the structural feature involved in the fluorochromic response. Notably, we were able to correlate the on-off thermo-fluorochromism of the complexes with the structural rearrangement at the zinc coordination core.

Benzimidazole–acid hydrazide Schiff–Mannich combo ligands enable nano–molar detection of Zn2+ via fluorescence turn–on mode from semi–aqueous medium, HuH–7 cells, and plants

Herein, we have synthesized two unsymmetrical and dipodal Schiff–Mannich combo ligands, benzoic acid (3–benzoimidazol–1–ylmethyl–2–hydroxy–5–methyl–benzylidene)–hydrazide (H2BBH) and the hydroxyl analogue, 2–hydroxy–benzoic acid (3–benzoimidazol–1–ylmethyl–2–hydroxy–5–methyl–benzylidene)–hydrazide (H3BSH) for selective detection of Zn2+ in semi–aqueous...

Lewis acidic zinc(II) salen-type Schiff-base complexes: sensing properties and responsive nanostructures

In this frontier article some peculiar characteristics of Zn(salen)-type Schiff-base complexes are reviewed. The paper is mainly focused on the most recent and relevant achievements on responsive supramolecular nanostructures and sensing properties, both of them related to the Lewis acidic character of the ZnII centre in these molecular species, providing an interpretation of these features. The sensing properties of Zn(salen)-type complexes mainly originate from optical spectroscopic changes associated with the formation of the adducts upon addition of a Lewis base (analyte), either by deaggregation of dimeric species or displacement of the solvent coordinated to the metal centre. In both cases the direct sensing is related either to the Lewis acidic character of the complex as well as to the Lewis basicity of the analyte. The formation of responsive nanostructures with fluorescent, and/or vapochromic, mechanochromic, and thermochromic characteristics is driven by non-mutual intermolecular ZnO interactions, further stabilized by π-π stacking interactions and/or interdigitation of the alkyl side groups. The Lewis acidic character is not a prerogative of Zn(salen)-type complexes of tetradentate Schiff-bases. Many other classes of ZnII complexes can possess this property. A correct interpretation of their chemistry is certainly useful for further development of these classical coordination compounds as new molecular materials.

Crystal structures, red-shifted luminescence and iodide-anion recognition properties of four novel D-A type Zn(ii) complexes

Four D-A type Zn(ii) coordination complexes, [Zn(C29H29N3O2)·(CH3OH)]·(CH3OH) (1), Zn2(C74H90N6O4)·(CH3OH) (2), [Zn(C30H28N4O2)·(CH3OH)]·(CH3OH) (3) and [Zn(C38H44N4O2)·(C2H5OH)]·(C2H5OH) (4), were designed, synthesized, and studied. Their fluorescence properties in the solid state and in THF solution were comprehensively analysed based on their single-crystal structures. The results showed that the red-shift of fluorescence emission from complexes 1 to 4 was successfully achieved via the strategy of enhancing intramolecular charge transfer (ICT) effects by increasing the number of electron-pulling and pushing groups gradually. Meanwhile, because of the fluorescence recognition abilities of these four complexes towards iodide anions in THF, they could be regarded as potential fluorescent sensors for I- in this organic solution in the future.

Self-Assemblies of Zinc Complexes for Aggregation-Induced Emission Luminogen Precursors

Positional isomers of zinc-nitrobenzoate complexes possessing pyridine -3-(or-4-) carboxamide are used for a comparative theoretical and experimental study to understand their utility as model complexes to understand the role of metal-to-ligand charge transfer in aggregation-induced emission (AIE). Among the five different model zinc complexes, four of them are non-ionic, and one is an ionic complex. The frontier molecular energy levels of different combinations of the positional isomeric complexes and the absorption maximum were ascertained by density functional theory calculations. The PolyQ value obtained from solid samples of each complex is different. Shifts in the emissions to higher wavelengths than the expected emission for the S₁ to S₀ transition were observed due to aggregations. The highest value of PolyQ among the complexes was 13.56% observed for emission at 439 nm (λ_ex = 350) of the non-ionic complex, namely, (di-aqua)bis(pyridine-3-carboxamide)di(2-nitrobenzoato)zinc(II) monohydrate. Close resemblance in emission lifetime decay profiles of the solid samples of those complexes and the respective solutions of those complexes in dimethyl sulfoxide with or without water showed a common trend, suggesting aggregation-induced emission in each case. Aggregation-induced emission caused by adding water in dimethyl sulfoxide solution of each complex showed an initial increase without a shift in the emission wavelength followed by a quenching with a shift of the respective emission peak to a short wavelength. Dynamic light scattering studies showed an increase in the average particle sizes upon an increase in the concentration of water. This indicated initial participation of water molecules to form aggregates with the complexes, favoring an increase in the AIE intensity. Aggregation of each complex changes with the concentration of water, and an increase in the concentration of water beyond a characteristic limit causes lowering of the emission intensity to the short wavelength.

Insights on the interaction of Zn2+ cation with triazoles: Structures, bonding, electronic excitation and applications

At present, we investigate the structures, the stability, the bonding and the spectroscopy of the Zn²⁺-triazole complexes (Zn²⁺-Tz), which are subunits of triazolate based porous materials and Zn-enzymes. This theoretical work is performed using ab initio methods and density functional theory (DFT) where dispersion correction is included. Through these benchmarks, we establish the ability and reliability of M05-2X+D3 and PBE0+D3 functionals for the correct description of Zn²⁺-Tz bond since these DFTs lead to close agreement with post Hartree-Fock methods. Therefore, M05-2X+D3 and PBE0+D3 functionals are recommended for the characterization of larger organometallic complexes formed by Zn and N-rich linkers. For Zn²⁺-Tz, we found two stable σ-type complexes: (i) a planar structure where Zn²⁺ links to unprotonated nitrogen and (ii) an out-of-plane cluster where carbon interacts with Zn²⁺. The most stable isomers consist on a coordinated covalent bond between the lone pair of unprotonated nitrogen and the vacant 4s orbital of Zn²⁺. The roles of covalent interactions within these complexes are discussed after vibrational, NBO, NPA charges and orbital analyses. The bonding is dominated by charge transfer from Zn²⁺ to Tz and intramolecular charge transfer, which plays a vital role for the catalytic activity of these complexes. These findings are important to understand, at the microscopic level, the structure and the bonding within triazolate based macromolecular porous materials and Zn-enzymes.

Experimental and Computational Investigation of Salophen-Zn Gas Phase Complexes with Cations: A Source of Possible Interference in Anionic Recognition

We explore the possibility that protonated molecular ions might be an unexpected source of interference in the recognition process of anions and neutral species by Zn-salophen receptors. Zn-salophen complexes are known to bind anions and neutral molecules in solution. We present here evidence (from computational work and IRMPD spectroscopy) that these complexes can also be the binding site for protonated pyridine or quinuclidine. The resulting binding pattern does not involve the Zn ion, but one of the oxygen atoms directly attached to it. The resulting complex therefore turns out to have a positive charge adjacent to the Zn-salophen binding site. This finding seems to point to the existence of an interfering factor in the quantification of the experimental data about the association constant.

Nanomolar pyrophosphate detection and nucleus staining in living cells with simple terpyridine-Zn(II) complexes

Great efforts have been made to develop fluorescent probes for pyrophosphate (PPi) detection. Nucleus staining with fluorescence microscopy has been also widely investigated. But fluorescent probes for PPi detection with high sensitivity in water medium and nucleus staining with low-cost non-precious metal complexes in living cells are still challenging. Herein, we report simple terpyridine-Zn(II) complexes for selective nanomolar PPi detection over ATP and ADP in water based on aggregation induced emission (AIE) and intramolecular charge transfer (ICT). In addition, these terpyridine-Zn(II) complexes were successfully employed for nucleus staining in living cells. These results demonstrated simply obtained terpyridine-Zn(II) complexes are powerful tool for PPi detection and the development of PPi-related studies.

G-quadruplex vs. duplex-DNA binding of nickel(II) and zinc(II) Schiff base complexes

Novel nickel(II) (1) and zinc(II) (2) complexes of a Salen-like ligand, carrying a pyrimidine ring on the N,N' bridge, were synthesized and characterized. Their interaction with duplex and G-quadruplex DNA was investigated in aqueous solution through UV-visible absorption, circular dichroism and viscometry measurements. The results obtained point out that, while the zinc(II) complex does not interact with both duplex and G-quadruplex DNA, the nickel(II) complex 1 binds preferentially to G-quadruplex respect to duplex-DNA, with values of the DNA-binding constants, Kb, 2.6×10(5)M(-1) and 3.5×10(4)M(-1), respectively. Molecular dynamics simulations provided an atomic level model of the top-stacking binding occurring between 1 and hTelo (a 22-mer sequence oligonucleotide) in G-quadruplex conformation.

Synthesis, magnetism and spectral studies of six defective dicubane tetranuclear {M4O6} (M = NiII, CoII, ZnII) and three trinuclear CdII complexes with polydentate Schiff base ligands

Six defective dicubane face-shared and three trinuclear complexes are synthesized. The magnetic behaviors of Ni^II/Co^II complexes and fluorescence properties of Zn^II and Cd^II are studied.

Structure, Spectroscopy, and Bonding within the Zn(q+)-Imidazole(n) (q = 0, 1, 2; n = 1-4) Clusters and Implications for Zeolitic Imidazolate Frameworks and Zn-Enzymes

Using density functional theory (DFT) with dispersion correction and ab initio post Hartree-Fock methods, we treat the bonding, the structure, the stability, and the spectroscopy of the complexes between Zn(q+) and imidazole (Im), Zn(q+)Imn (where q = 0, 1 and 2; n = 1-4). These entities are subunits of zeolitic imidazolate frameworks (ZIFs) and Zn-enzymes, which possess relevant roles in industrial and biological domains, respectively. We also investigate the Imn (n = 2-4) clusters for comparison. For each species, we determine several new structures that were not found previously. Our calculations show a competition between atomic metal solvation, by either σ-type interactions or π-stacking type interaction, and proton transfer through hydrogen bonding (H-bonding) in charged species. This results in several geometrical environments around the metal. These are connected with structural properties and the functional role of Zn cation within ZIFs and Zn-enzymes. Moreover, we show that the Zn(2+)Imn subunits do not absorb in the visible domain, which may be related to the photostability of ZIFs. Our findings are important for the development of new applications of ZIFs and metalloenzymes.

Characterization of Znq+–imidazole (q = 0, 1, 2) organometallic complexes: DFT methods vs. standard and explicitly correlated post-Hartree–Fock methods

Benchmarking DFts for the characterization of the Zn^q+–imidazole (q= 0, 1, 2) complexes.