Pumping of water by rotating chiral carbon nanotube

Water molecules in CNT-Si3N4 membrane: Properties and the separation effect for water-alcohol solution

Water confined in carbon nanotubes (CNTs) has been intensively studied because of its unique properties and potential for various applications and is often embedded in silicon nitride (Si₃N₄) membranes. However, the understanding of the influence of Si₃N₄ on the properties of water in CNTs lacks clarity. In this study, we performed molecular dynamics simulations to investigate the effect of the Si₃N₄ membrane on water molecules inside CNTs. The internal electric field generated in the CNTs by the point charges of the Si₃N₄ membrane changes the structure and dynamical properties of water in the nanotubes, causing it to attain a disordered structure. The Si₃N₄ membrane decreases the diffusivity of water in the CNTs; this is because the Coulomb potential energy (i.e., electrostatic interaction) of water decreases owing to the presence of Si₃N₄, whereas the Lennard-Jones potential energy (i.e., van der Waals interaction) does not change significantly. Furthermore, electrostatic interactions make the water structure more stable in the CNTs. As a result, the Si₃N₄ membrane enhances the separation effect of the water-methanol mixture with CNTs in the presence of an external electric field. Furthermore, the threshold of the external electric field strength to induce water-methanol separation with CNTs is reduced owing to the presence of a silicon nitride membrane.

Efficiency of CNT-based rotation transmission nanosystem in water

Carbon nanotubes (CNTs) have been widely used as the motor and rotor in a rotational transmission nanosystem (RTnS), whose function is to transfer the input rotational frequency of the motor into the output frequency of the rotor through motor-rotor interactions. A wide range of techniques has been explored to achieve a CNT-based RTnS with a stable and adjustable transmission. In this work, a CNT-based rotor is partly immersed into a water box and the associated water-rotor interaction leads to effective manipulation of the transmission efficiency of RTnS. Molecular dynamics simulations are performed on this new RTnS to investigate the dynamic response of the rotor and the local flow field near the water-rotor interface. Various parameters, including ambient temperature, tubes' radii, and volume fractions of water in the box (V_f) are examined for their effects on the rotational transmission efficiency. This study offers useful guidelines for the design of stable RTnS with controllable transmission efficiency.

Nanotube Active Water Pump Driven by Alternating Hydrophobicity

Water transport must be efficiency controlled for the future sustainability of life. Various water transport systems using carbon nanotubes have been proposed in recent years. Although these systems are more permeable than aquaporins, their water transport is passive. In this study, we successfully demonstrate an active water pump driven by simple hydrophobic interaction through computer simulation. Even in the absence of a pressure- or density-gradient, the proposed pump can actively transport water molecules by alternately switching the hydrophobicity of the pump surface. The water transport rate can be easily controlled by varying the time interval of switching. The pump with optimized switching time exhibits prominent water permeance. The results obtained herein can be applied in various water transport technologies because of the simple mechanics. The proposed water pump has the potential to realize an effective device such as a low-energy artificial purification system.

Transport Phenomena in Nano/Molecular Confinements

The transport of fluid and ions in nano/molecular confinements is the governing physics of a myriad of embodiments in nature and technology including human physiology, plants, energy modules, water collection and treatment systems, chemical processes, materials synthesis, and medicine. At nano/molecular scales, the confinement dimension approaches the molecular size and the transport characteristics deviates significantly from that at macro/micro scales. A thorough understanding of physics of transport at these scales and associated fluid properties is undoubtedly critical for future technologies. This compressive review provides an elaborate picture on the promising future applications of nano/molecular transport, highlights experimental and simulation metrologies to probe and comprehend this transport phenomenon, discusses the physics of fluid transport, tunable flow by orders of magnitude, and gating mechanisms at these scales, and lists the advancement in the fabrication methodologies to turn these transport concepts into reality. Properties such as chain-like liquid transport, confined gas transport, surface charge-driven ion transport, physical/chemical ion gates, and ion diodes will provide avenues to devise technologies with enhanced performance inaccessible through macro/micro systems. This review aims to provide a consolidated body of knowledge to accelerate innovation and breakthrough in the above fields.

Towards Performant Design of Carbon-Based Nanomotors for Hydrogen Separation through Molecular Dynamics Simulations

Clean energy technologies represent a hot topic for research communities worldwide. Hydrogen fuel, a prized alternative to fossil fuels, displays weaknesses such as the poisoning by impurities of the precious metal catalyst which controls the reaction involved in its production. Thus, separating H₂ out of the other gases, meaning CH₄, CO, CO₂, N₂, and H₂O is essential. We present a rotating partially double-walled carbon nanotube membrane design for hydrogen separation and evaluate its performance using molecular dynamics simulations by imposing three discrete angular velocities. We provide a nano-perspective of the gas behaviors inside the membrane and extract key insights from the filtration process, pore placement, flux, and permeance of the membrane. We display a very high selectivity case (ω = 180° ps⁻¹) and show that the outcome of Molecular Dynamics (MD) simulations can be both intuitive and counter-intuitive when increasing the ω parameter (ω = 270° ps⁻¹; ω = 360° ps⁻¹). Thus, in the highly selective, ω = 180° ps⁻¹, only H₂ molecules and 1–2 H₂O molecules pass into the filtrate area. In the ω = 270° ps⁻¹, H₂, CO, CH₄, N₂, and H₂O molecules were observed to pass, while, perhaps counter-intuitively, in the third case, with the highest imposed angular velocity of 360° ps⁻¹ only CH₄ and H₂ molecules were able to pass through the pores leading to the filtrate area.

Taming the thermodiffusion of alkali halide solutions in silica nanopores

Thermal fields give rise to thermal coupling phenomena, such as mass and charge fluxes, which are useful in energy recovery applications and nanofluidic devices for pumping, mixing or desalination. Here we use state of the art non-equilibrium molecular simulations to quantify the thermodiffusion of alkali halide solutions, LiCl and NaCl, confined in silica nanopores, targeting diameters of the order of those found in mesoporous silica nanostructures. We show that nanoconfinement modifies the thermodiffusion behaviour of the solution. Under confinement conditions, the solutions become more thermophilic, with a preference to accumulate at hot sources, or thermoneutral, with the thermodiffusion being inhibited. Our work highlights the importance of nanoconfinement in thermodiffusion and outlines strategies to tune mass transport at the nanoscale, using thermal fields.

Water in Nanopores and Biological Channels: A Molecular Simulation Perspective

This Review explores the dynamic behavior of water within nanopores and biological channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside selected structural and other experimental investigations. Structures of biological nanopores and channels are reviewed, emphasizing those high-resolution crystal structures, which reveal water molecules within the transmembrane pores, which can be used to aid the interpretation of simulation studies. Different levels of molecular simulations of water within nanopores are described, with a focus on molecular dynamics (MD). In particular, models of water for MD simulations are discussed in detail to provide an evaluation of their use in simulations of water in nanopores. Simulation studies of the behavior of water in idealized models of nanopores have revealed aspects of the organization and dynamics of nanoconfined water, including wetting/dewetting in narrow hydrophobic nanopores. A survey of simulation studies in a range of nonbiological nanopores is presented, including carbon nanotubes, synthetic nanopores, model peptide nanopores, track-etched nanopores in polymer membranes, and hydroxylated and functionalized nanoporous silica. These reveal a complex relationship between pore size/geometry, the nature of the pore lining, and rates of water transport. Wider nanopores with hydrophobic linings favor water flow whereas narrower hydrophobic pores may show dewetting. Simulation studies over the past decade of the behavior of water in a range of biological nanopores are described, including porins and β-barrel protein nanopores, aquaporins and related polar solute pores, and a number of different classes of ion channels. Water is shown to play a key role in proton transport in biological channels and in hydrophobic gating of ion channels. An overall picture emerges, whereby the behavior of water in a nanopore may be predicted as a function of its hydrophobicity and radius. This informs our understanding of the functions of diverse channel structures and will aid the design of novel nanopores. Thus, our current level of understanding allows for the design of a nanopore which promotes wetting over dewetting or vice versa. However, to design a novel nanopore, which enables fast, selective, and gated flow of water de novo would remain challenging, suggesting a need for further detailed simulations alongside experimental evaluation of more complex nanopore systems.

Controlling ion transport in a C2N-based nanochannel with tunable interlayer spacing

Selective ion transport through a nanochannel formed by stacked two-dimensional materials plays a key role in water desalination, nanofiltration, and ion separation. Although there have been many functional nanomaterials used in these applications, how to well control ion transport in a laminar structure so as to obtain the desired selectivity still remains a challenging problem. In the present work, the transport of ions through a C₂N-based nanochannel is investigated by using all-atom molecular dynamics simulation. It is found that C₂N-based nanochannels with different interlayer spacing posses diverse ion selectivity, which is mainly attributed to the distinct loading capability among ions and the different velocity of ions inside the nanochannel. Moreover, we also find that the ion selectivity is dependent on the electric field, but nearly independent of the salt concentration. The present study may provide some physical insights into the experimental design of C₂N-based nanodevices in nanofiltration.

Nanopumping of water via rotation of graphene nanoribbons

In this paper, we perform molecular dynamics simulations to propose a novel bio-inspired nanopumping mechanism that is achieved through the rotation of graphene nanoribbons. Due to the rotation and interaction with water, the graphene nanoribbons undergo morphological transformation. It is shown that with appropriate geometrical and spatial parameters, the resulting morphology is twisted ribbon, which is efficient in pumping of water through a channel. This mimics the propulsive behavior of bacterial flagella through continual rotation at the base and causing morphology of the geometry into twisted ribbons, thus driving flow. It was observed that the maximum flux rate decreases upon reaching the optimal configuration even with increasing rotational speed and graphene width. This is due to the development of cavitation near the region of the nanoribbon with tip velocities approaching the speed of sound in water. The simulation shows promising results where the flux rate of the driven flow outperforms various nanopump configurations that have been reported in recent literature by more than one order.

Computational investigation on DNA sequencing using functionalized graphene nanopores

Fast, low-cost and reliable DNA sequencing is one of the most desirable innovations in recent years, which can pave the way for high throughput, label-free and inexpensive personalized genome sequencing techniques. Although graphene-based nanopore devices hold great promise for next-generation DNA sequencing, it is still a challenging problem to detect different DNA sequences efficiently and accurately. In the present work, the translocation of four homogeneous DNA strands (i.e., poly(A)20, poly(C)20, poly(G)20, and poly(T)20) through the functionalized graphene nanopores is investigated by all-atom molecular dynamic simulations. Interestingly, it is found that the four types of bases could be identified by different ionic currents when they pass through the hydrogenated and hydroxylated pores. For the hydrogenated nanopore, the difference in the ionic current for the four bases is mainly attributed to the different electrostatic interactions between the base and the ion. For the hydroxylated nanopore, apart from the electrostatic interactions, the position of a nucleotide inside the nanopore and the dwell time of an ion around the nucleotide also play an important role in the ionic current. The present study could be helpful to better design a novel device for DNA sequencing in the future.

Ion transport through a nanoporous C2N membrane: the effect of electric field and layer number

Using all-atom molecular dynamic simulations, we show that a monolayer C₂N membrane possesses higher permeability and excellent ion selectivity, and that multilayer C₂N membranes have promising potential for water desalination.

A controllable water signal transistor

We performed molecular dynamics simulations to study the regulating ability of water chains confined in a Y-shaped nanochannel. It was shown that a signal at the molecular level could be controlled by two other charge-induced signals when the water chains were confined in a Y-shaped nanochannel, demonstrating promising applications as water signal transistors in nanosignal systems. The mechanism of a water signal transistor is similar to a signal logic device. This remarkable ability to control the water signal is attributed to the strong dipole-ordering of the water chains in the nanochannel. The controllable water signal process of the Y-shaped nanochannel provides opportunities for future application in the design of molecular-scale signal devices.

Investigation of Transport Properties of Water-Methanol Solution through a CNT with Oscillating Electric Field

Molecular dynamics simulations were used to investigate the transport properties of water-methanol solution getting through a carbon nanotube (CNT) with an oscillating electric field. Eight alternating electric fields with different oscillation periods were used in this work. Under the oscillating electric field, water molecules have the advantage of occupying a CNT over methanol molecules. Meanwhile, the space occupancy of water-methanol solution in the CNT increases as the oscillating period increases. More importantly, we found that the oscillating period of electric field affects the van der Waals interaction of the solution inside the CNT and the shell of the CNT, which results in the change in the number of hydrogen bonds in the water-methanol solution confined in the CNT. And the change in the hydrogen-bond network leads to the change in transport properties of water-methanol solution.

Design of Nano Screw Pump for Water Transport and its Mechanisms

Nanopumps conducting fluids through nanochannels have attracted considerable interest for their potential applications in nanofiltration, water desalination and drug delivery. Here, we demonstrate by molecular dynamics (MD) simulations that a nano screw pump is designed with helical nanowires embedded in a nanochannel, which can be used to drive unidirectional water flow. Such helical nanowires have been successfully synthesized in many experiments. By investigating the water transport mechanism through nano screw pumps with different configuration parameters, three transport modes were observed: cluster-by-cluster, pseudo-continuous, and linear-continuous, in which the water flux increases linearly with the rotating speed. The influences of the nanowires’ surface energy and the screw’s diameter on water transport were also investigated. Results showed that the water flux rate increases as the decreasing wettability of helical nanowires. The deviation in water flux in screw pumps with smaller radius is attributed to the weak hydrogen bonding due to space confinement and the hydrophobic blade. Moreover, we also proposed that such screw pumps with appropriate diameter and screw pitch can be used for water desalination. The study provides an insight into the design of multifunctional nanodevices for not only water transport but water desalination in practical applications.

Water desalination using nano screw pumps with a considerable processing rate

The nano screw pump is used for water desalination while maintaining a considerable, fast water flow.

Interface nanoparticle control of a nanometer water pump

A nanoparticle is forced to move on a membrane surface, inducing considerable water flux through a carbon nanotube, suggesting a controllable nanometer water pump.

Rotating carbon nanotube membrane filter for water desalination

We have designed a porous nanofluidic desalination device, a rotating carbon nanotube membrane filter (RCNT-MF), for the reverse osmosis desalination that can turn salt water into fresh water. The concept as well as design strategy of RCNT-MF is modeled, and demonstrated by using molecular dynamics simulation. It has been shown that the RCNT-MF device may significantly improve desalination efficiency by combining the centrifugal force propelled reverse osmosis process and the porous CNT-based fine scale selective separation technology.

A current-driven nanometer water pump

The design of a water pump, which has huge potential for applications in nanotechnology and daily life, is the dream of many scientists. In this paper, we successfully design a nanometer water pump by using molecular dynamics simulations. Ions of either sodium or chlorine in a narrow channel will generate electric current under electric fields, which then drives the water through a wider channel, similar to recent experimental setups. Considerable water flux is achieved within small field strengths that are accessible by experimentation. Of particular interest, is that for sodium the water flux increases almost linearly with field strengths; while for chlorine there exists a critical field strength, the water flux exhibits a plateau before the critical value and increases linearly after it. This result follows the behavior of ion velocity, which is related to friction behavior. We also estimate the power and energy consumption for such a pump, and compare it to the macroscopic mechanical pumps. A further comparison suggests that different ions will have different pumping abilities. This study not only provides new, significant results with possible connection to existing research, but has tremendous potential application in the design of nanofluidic devices.

Water desalination by electrical resonance inside carbon nanotubes

By using molecular dynamics simulations, we not only design one new type of carbon nanotube-based device for efficient water desalination, but also reveal the underlying mechanism of the ion blockage.

Current inversions induced by resonant coupling to surface waves in a nanosized water pump

We conducted a molecular dynamics simulation to investigate current inversions in a nanosized water pump based on a single-walled carbon nanotube powered by mechanical vibration. It was found that the water current depended sensitively on the frequency of mechanical vibration. Especially in the resonance region, the nanoscale pump underwent reversals of the water current. This phenomenon was attributed to the dynamics competition of the water molecules in the two sections (the left and right parts) divided by the vibrating atom and the differences in phase and decay between the two mechanical waves generated by mechanical vibration and propagating in opposite directions toward the two ends of the carbon nanotube. Our findings provide an insight into water transportation through nanosized pumps and have potential in the design of high-flux nanofluidic systems and nanoscale energy converters.

Coarse-grained modeling of vesicle responses to active rotational nanoparticles

In recent years, magnetically-driven-rotating superparamagnetic nanoparticles have been emerging as a valuable component in designing targeted drug delivery carriers and cellular killers via membranes' physical rupture. The lack of an in-depth understanding of how to control the interaction of rotational nanoparticles (RNPs) with vesicles has hindered progress in the development of their relevant biomedical applications. Here we perform dissipative particle dynamics simulations to analyze the rotation frequencies, size, and coating patterns of the RNPs as they interact with the vesicle so as to provide novel designs of drug delivery applications. Results have revealed that the RNPs are capable of triggering local disturbance around the vesicle and therefore promoting the vesicle translocation toward the RNPs. By investigating the translocation time and driving forces required for RNPs to enter inside the vesicle at various rotation frequencies as well as the interaction energy between coated RNPs and the vesicle, we have tuned the coating pattern of the ligands on the surface of RNPs to open a specified channel in the vesicle for promoting drug delivery. Our findings can provide useful guidelines for the molecular design of patterned RNPs for controllable bio/inorganic interfaces and help establish qualitative rules for the organization and optimization of ligands on the surface of the desired drug delivery carriers.

Nanotube-Enabled Vesicle-Vesicle Communication: A Computational Model

Cell-to-cell communications via the tunneling nanotubes or gap junction channels are vital for the development and maintenance of multicellular organisms. Instead of these intrinsic communication pathways, how to design artificial communication channels between cells remains a challenging but interesting problem. Here, we perform dissipative particle dynamics (DPD) simulations to analyze the interaction between rotational nanotubes (RNTs) and vesicles so as to provide a novel design mechanism for cell-to-cell communication. Simulation results have demonstrated that the RNTs are capable of generating local disturbance and promote vesicle translocation toward the RNTs. Through ligand pattern designing on the RNTs, we can find a suitable nanotube candidate with a specific ligand coating pattern for forming the RNT-vesicle network. The results also show that a RNT can act as a bridged channel between vesicles, which facilitates substance transfer. Our findings provide useful guidelines for the molecular design of patterned RNTs for creating a synthetic channel between cells.