Interactions of the Biphenylene Network with α-Helical and β-Sheet Proteins: Molecular Dynamics Simulations

In recent years, nanomaterials have been widely used in the biomedical field. The biphenylene network is a highly promising planar carbon nanomaterial. To better explore its biomedical applications, we need to understand the biological effects of the biphenylene network. To investigate the biological effects of the novel nanomaterial biphenylene network, we used molecular dynamics simulations to study the interactions of the novel planar carbon nanomaterial biphenylene network with α-helical and β-sheet proteins. We found that both types of proteins adsorb flatly on the surface of the biphenylene network; the strong van der Waals interaction is the main adsorption force, while π-π stacking also provides an auxiliary force for the adsorption. When the HP35 protein whose secondary structure is an α-helix was adsorbed on biphenylene network, the entire structure of α-helix 2 was disrupted and α-helix 3 partly recovered its helical structure after being disrupted. In contrast to the β-sheet YAP65 protein, only part of the structure of β-sheet 1 was disrupted. Therefore, the biocompatibility of the biphenylene network with the β-sheet YAP65 protein is better than that of the α-helical HP35 protein, which may be due to the different surface curvature of the protein's secondary structure. Our research promotes the application of the biphenylene network in biomedicine and provides a theoretical basis and experimental direction for practical experiments.

Green and sustainable approaches for the Friedel-Crafts reaction between aldehydes and indoles

The synthesis of indoles and their derivatives, more specifically bis(indolyl)methanes (BIMs), has been an area of great interest in organic chemistry, since these compounds exhibit a range of interesting biological and pharmacological properties. BIMs are naturally found in cruciferous vegetables and have been shown to be effective antifungal, antibacterial, anti-inflammatory, and even anticancer agents. Traditionally, the synthesis of BIMs has been achieved upon the acidic condensation of an aldehyde with indole, utilizing a variety of protic or Lewis acids. However, due to the increased environmental awareness of our society, the focus has shifted towards the development of greener synthetic technologies, like photocatalysis, organocatalysis, the use of nanocatalysts, microwave irradiation, ball milling, continuous flow, and many more. Thus, in this review, we summarize the medicinal properties of BIMs and the developed BIM synthetic protocols, utilizing the reaction between aldehydes with indoles, while focusing on the more environmentally friendly methods developed over the years.

Light-Induced Intramolecular Electron Transfer in a 1D [CuFe] Coordination Polymer Containing the [Fe(C2O4)3]3- Core

A one-dimensional (1D) ladder-like coordination polymer {NH4[{Cu(bpy)}2(C2O4)Fe(C2O4)3]·H2O}n (1; bpy = 2,2'-bipyridine) containing [Cu(bpy)(μ-C2O4)Cu(bpy)]2+ cationic units linked by oxalate groups of [Fe(C2O4)3]3- building blocks was investigated as a new type of photoactive solid-state system. It exhibits a photocoloration effect when exposed to direct sunlight or UV/vis irradiation. The photochromic properties and mechanism were studied by powder and single-crystal X-ray diffraction, UV/vis diffuse reflectance, IR and electron paramagnetic resonance spectroscopy, magnetization and impedance measurements, and density functional theory calculations. The process of photochromism involves simultaneous intramolecular electron transfers from the oxalate ligand to Fe(III) and to [CuII(bpy)(μ-C2O4)CuII(bpy)]2+, leading to the reduction of the metal centers to the electronic states Fe(II) and Cu(I), accompanied by the release of gaseous CO2.

Recent Advances on Direct Functionalization of Indoles in Aqueous Media

Indoles and their derivatives have dominated a significant proportion of nitrogen-containing heterocyclic compounds and play an essential role in synthetic and medicinal chemistry, pesticides, and advanced materials. Compared with conventional synthetic strategies, direct functionalization of indoles provides straightforward access to construct diverse indole scaffolds. As we enter an era emphasizing green and sustainable chemistry, utilizing environment-friendly solvents represented by water demonstrates great potential in synthesizing valuable indole derivatives. This review aims to depict the critical aspects of aqueous-mediated indoles functionalization over the past decade and discusses the future challenges and prospects in this fast-growing field. For the convenience of readers, this review is classified into three parts according to the bonding modes (C-C, C-N, and C-S bonds), which focus on the diversity of indole derivatives, the prominent role of water in the chemical process, and the types of catalyst systems and mechanisms. We hope this review can promote the sustainable development of the direct functionalization of indoles and their derivatives and the discovery of novel and practical organic methods in aqueous phase.

How to Obtain Maximum Environmental Applicability from Natural Silicates

Unmodified natural silicates (bentonite, kaolin, clinoptilolite and diatomites) were tested as adsorbents for the organic pollutants in water tables using Methylene Blue (MB) as the model adsorbate. Among the selected materials, bentonite adsorbed as much as 237 mg/g, confirming its excellent suitability for pollutant removal. Spectral evidence confirmed successful MB immobilization at the bentonite surface. Furthermore, the thermal treatment of MB-saturated adsorbent in an inert atmosphere at 700 °C produced a carbon/silicate composite. EDX confirmed the formation of the nitrogen-doped carbon overlay on the silica scaffold and the obtained composite material was probed as an electrode material for oxygen reduction in an alkaline solution. Reduction proceeded via a two-electron mechanism with the main product being HO2−, a known nucleophile, which was subsequently used to degrade/demethylate MB. The composite showed a considerable 70% MB removal rate after an hour of electrochemical treatment. The synergy between the processes of adsorption of MB and the surface-generated HO2− dictates the efficiency of the method and points to a possible route for spent adsorbent reuse in the form of a durable product for environmental protection.

Exploring the effect of silicene monolayer on the structure and function of villin headpiece and amyloid fibrils by molecular dynamics simulations

With the development of various nanomaterial expected to be used in biomedical fields, it is more important to evaluate and understand their potential effects on biological system. In this work, two proteins with different structure, Villin Headpiece (HP35) with α-helix structure and protofibrils Aβ1-42 with five β-strand chains, were selected and their interactions with silicene were studied by means of molecular dynamics (MD) simulation to reveal the potential effect of silicene on the structure and function of biomolecules. The obtained results indicated that silicene could rapidly attract HP35 and Aβ1-42 fibrils onto the surface to form a stable binding. The adsorption strength was moderate and no significant structural distortion of HP35 and Aβ1-42 fibrils was observed. Moreover, the strength of calculated the H-bonds in neighbor chain of Aβ1-42 fibrils indicated that the mild interactions between silicene and fibrils could regularize the structure of Aβ1-42 fibrils and stabilize the interactions between five chains of fibrils protein, which might enhance the aggregation of Aβ1-42 fibrils. This study provides a new insight for understanding the interaction between nanomaterials and biomolecules and moves forward the development of silicene into biomedical fields.

Selective detection of fluoride via amplified donor-acceptor interaction of 6H-indolo[2,3-b]quinoline

In this report, 6H-indolo[2,3-b]quinoline (hereafter 2a) was synthesized and employed as an optical chemosensor for fluoride. The sensitivity of 2a towards fluoride was established from the change in both the absorption and emission signals. The various in-situ¹H NMR, UV-Vis, and density functional studies indicate that the 1:2 binding interaction between 2a and fluoride followed by deprotonation to its corresponding di-anion (2a^2-), which in turn boosted the donor-acceptor interaction between indole and quinoline moiety in 2a^2-via expansion of torsion angle by 10.2° as compared to 2a. Consequently the significant changes in both the absorption and emission signal of 2a allow us to detect and estimate the concentration of fluoride up to 0.2 μM from the mixture of different anions.

Functionalized magnetic nanoparticles: Synthesis, characterization, catalytic application and assessment of toxicity

Cost-effective water cleaning approaches using improved treatment technologies, for instance based on catalytic processes with high activity catalysts, are urgently needed. The aim of our study was to synthesize efficient Fenton-like photo-catalysts for rapid degradation of persistent organic micropollutants in aqueous medium. Iron-based nanomaterials were chemically synthesized through simple procedures by immobilization of either iron(II) oxalate (FeO) or iron(III) citrate (FeC) on magnetite (M) nanoparticles stabilized with polyethylene glycol (PEG). Various investigation techniques were performed in order to characterize the freshly prepared catalysts. By applying advanced oxidation processes, the effect of catalyst dosage, hydrogen peroxide concentration and UV-A light exposure were examined for Bisphenol A (BPA) conversion, at laboratory scale, in mild conditions. The obtained results revealed that BPA degradation was rapidly enhanced in the presence of low-concentration H₂O₂, as well as under UV-A light, and is highly dependent on the surface characteristics of the catalyst. Complete photo-degradation of BPA was achieved over the M/PEG/FeO catalyst in less than 15 minutes. Based on the catalytic performance, a hierarchy of the tested catalysts was established: M/PEG/FeO > M/PEG/FeC > M/PEG. The results of cytotoxicity assay using MCF-7 cells indicated that the aqueous samples after treatment are less cytotoxic.

Thin films containing oxalate-capped iron oxide nanomaterials deposited on glass substrate for fast Fenton degradation of some micropollutants

The main goal of the study was to evaluate the catalytic activity of two hybrid nanocatalysts consisting in Fe₃O₄ nanoparticles modified with either chitosan (CS) or polyethylene glycol (PEG)/ferrous oxalate (FO), and further deposited on solid substrate as thin films. X-ray powder diffraction (XRD), Fourier transform infrared (FT-IR) spectroscopy, and scanning electron microscopy (SEM) were employed for the structural and morphological characterizations of the heterogeneous catalysts. The degradation kinetic studies of two reactive azo dye (Reactive Black 5 (RB5) and Reactive Yellow 84 (RY84)) as well as Bisphenol A (BPA) solutions were carried out using Fenton-like oxidation, in the presence of different concentrations of H₂O₂, at initial near-neutral pH and room temperature. The results indicated that a low amount of catalytic material (0.15 g/L), deposited as thin film, was able to efficiently trigger dye degradation in solution in the presence of 6.5 mmol/L H₂O₂ for RB5 and of only 1.6 mmol/L H₂O₂ in the case of BPA and RY84. In the presence of complex matrices such as WWTP waters, the removal of BPA was low (only 24% for effluent samples). Our findings recommend the studied immobilized nanocatalysts as promising economical tools for the pre-treatment of wastewaters using advanced oxidation processes (AOPs).

Novel synthesis of an iron oxalate capped iron oxide nanomaterial: a unique soil conditioner and slow release eco-friendly source of iron sustenance in plants

Iron (Fe) is a vital plant-derived micronutrient in the human diet.

Nickel Nanoparticle-Decorated Porous Carbons for Highly Active Catalytic Reduction of Organic Dyes and Sensitive Detection of Hg(II) Ions

High surface area carbon porous materials (CPMs) synthesized by the direct template method via self-assembly of polymerized phloroglucinol-formaldehyde resol around a triblock copolymer template were used as supports for nickel nanoparticles (Ni NPs). The Ni/CPM materials fabricated through a microwave-assisted heating procedure have been characterized by various analytical and spectroscopic techniques, such as X-ray diffraction, field emission transmission electron microscopy, vibrating sample magnetometry, gas physisorption/chemisorption, thermogravimetric analysis, and Raman, Fourier-transform infrared, and X-ray photon spectroscopies. Results obtained from ultraviolet-visible (UV-vis) spectroscopy demonstrated that the supported Ni/CPM catalysts exhibit superior activity for catalytic reduction of organic dyes, such as methylene blue (MB) and rhodamine B (RhB). Further electrochemical measurements by cyclic voltammetry (CV) and differential pulse voltammetry (DPV) also revealed that the Ni/CPM-modified electrodes showed excellent sensitivity (59.6 μA μM(-1) cm(-2)) and a relatively low detection limit (2.1 nM) toward the detection of Hg(II) ion. The system has also been successfully applied for the detection of mercuric ion in real sea fish samples. The Ni/CPM nanocomposite represents a robust, user-friendly, and highly effective system with prospective practical applications for catalytic reduction of organic dyes as well as trace level detection of heavy metals.

A selective ratiometric fluoride ion sensor with a (2,4-dinitrophenyl)hydrazine derivative of bis(indolyl) methane and its mode of interaction

An easy-to-synthesis chemosensor was synthesized and employed as a selective optical chemosensor for fluoride through naked eye detection, which allow us to detect and estimate the concentration of fluoride ion accurately up to 2 μM via ratiometric responses.

Iron oxalate capped iron–copper nanomaterial for oxidative transformation of aldehydes

An efficient, sustainable and green procedure for the synthesis of selective orthorhombic iron(oxalate) capped Fe–Cu bimetallic oxide nanomaterial [Fe(ox)Fe–CuOx] was developed using a sodium borohydride reduction of iron(ii) salt in the presence of oxalic acid at room temperature followed by addition of copper sulfate in water.