Thermal Truncation of Heptamethine Cyanine Dyes

Cyanine dyes are a class of organic, usually cationic molecules containing two nitrogen centers linked through conjugated polymethine chains. The synthesis and reactivity of cyanine derivatives have been extensively investigated for decades. Unlike the recently described phototruncation process, the thermal truncation (chain shortening) reaction is a phenomenon that has rarely been reported for these important fluorophores. Here, we present a systematic investigation of the truncation of heptamethine cyanines (Cy7) to pentamethine (Cy5) and trimethine (Cy3) cyanines via homogeneous, acid-base-catalyzed nucleophilic exchange reactions. We demonstrate how different substituents at the C3' and C4' positions of the chain and different heterocyclic end groups, the presence of bases, nucleophiles, and oxygen, solvent properties, and temperature affect the truncation process. The mechanism of chain shortening, studied by various analytical and spectroscopic techniques, was verified by extensive ab initio calculation, implying the necessity to model catalytic reactions by highly correlated wave function-based methods. In this study, we provide critical insight into the reactivity of cyanine polyene chains and elucidate the truncation mechanism and methods to mitigate side processes that can occur during the synthesis of cyanine derivatives. In addition, we offer alternative routes to the preparation of symmetrical and unsymmetrical meso-substituted Cy5 derivatives.

Benzoindoxazine derivatives containing carbazole for detection of CN- and its application in plant seed extracts and cell imaging

Cyanide (CN^-) is a highly toxic compound that exists in many substances and is harmful to the environment and human health. Therefore, it is of great significance to develop excellent CN^- ion probes, especially solvent-induced on-off fluorescent probes. Based on the condensation reaction of indolo[2,1-b][1,3]oxazine molecules with aldehydes, probes (E)-13a-(2-(9-ethyl-9H-carbazol-3-yl)vinyl)-14,14-dimethyl-10-nitro-13a,14-dihydro-8H-benzo[e]benzo[5,6][1,3]oxazino[3,2-a]indole (NCO) and (E)-13a-(2-(9-benzyl-9H-carbazol-3-yl)vinyl)-14,14-dimethyl-10-nitro-13a,14-dihydro-8H-benzo[e]benzo[5,6][1,3]oxazino[3,2-a]indole (NBO) were synthesized to detect CN^-. Compared with other cyanogen ion probes, NCO and NBO have special carbazole ring structures and large conjugate systems. When CN^- is added to the probe-detection solution, color changes that are visible to the naked eye can occur. The UV-vis spectrum test using differential spectroscopy shows that the probe (i) has excellent solvent-induced switching characteristics and stability (CH₃OH-H₂O) and (ii) high selectivity, anti-interference ability, and sensitivity for the detection of CN^-. The fluorescence limit of detections (LODs) are 1.05 µM for NCO and 1.34 µM for NBO. The UV LODs are 0.83 µM for NCO and 0.87 µM for NBO. Fluorescence spectroscopy shows that the probe has remarkable fluorescence properties. Fluorescence titration experiments, liver cancer cell (Hep G2) imaging, and cytotoxicity experiments all show that the probes have high biocompatibility, low toxicity, high cell permeability, and high sensitivity for the detection of CN^- in cells. In addition, NCO and NBO have been successfully used for the detection of cyanogenic glycosides in the seeds of ginkgo, crabapple, apple, and cherry. Test strips were fabricated to detect CN^-. After adding CN^-, the color of the test strip changed significantly-from brown to light yellow; thus, the test strips have a high application value in the fields of drug quality control, drug safety testing, and pharmacological research.

A Comprehensive Review on Thiophene Based Chemosensors

The recognition and sensing of various analytes in aqueous and biological systems by using fluorometric or colorimetric chemosensors possessing high selectivity and sensitivity, low cost has gained enormous attention. Furthermore, thiophene derivatives possess exceptional photophysical properties compared to other heterocycles, and therefore they can be employed in chemosensors for analyte detection. In this review, we have tried to explore the design and detection mechanism of various thiophene-based probes, practical applicability, and their advanced models (design guides), which could be thoughtful for the synthesis of new thiophene-based probes. This review provides an insight into the reported chemosensors (2008-2020) for thiophene scaffold as effective emission and absorption-based chemosensors.

Photo-Induced N-N Coupling of o-Nitrobenzyl Alcohols and Indolines To Give N-Aryl-1-amino Indoles

A novel method to synthesize N-aryl-1-amino indoles was established by the photoinduced N-N coupling reaction. This protocol is by treatment of o-nitrobenzyl alcohols and indolines in the presence of TEAI and acetic acid with a 24 W ultraviolet (UV) light-emitting diode (LED) (385-405 nm) irradiation. The products bearing an aldehyde group can be further transformed to fluorescent probes based on Rhodamine 6G derivative 11, which shows a high specificity and sensitivity for Fe³⁺.

Rational design and application of a fluorogenic chemodosimeter for selective detection of cyanide in an aqueous solution via excimer formation

A new quinone-benzothiazole imine based chemodosimeter (R) was rationally designed, synthesized and characterized using NMR and mass spectral techniques. The receptor colorimetrically senses cyanide in aq. HEPES buffer: DMF (2:8 v/v) solution with an instantaneous colour change from yellow to bluish green. An enhancement of fluorescence intensity at 429 nm with excimer formation is also observed after addition of cyanide to the receptor, which is accompanied with a colour change from yellow to blue under UV lamp. Nucleophilic addition of cyanide to imine C-atom inhibits intra-molecular charge transfer (ICT) transition, which is responsible for the excimer formation. This chemical reaction is confirmed by ¹H NMR titration. The receptor binds with two equivalents of cyanide with a binding constant of 5.55 × 10⁴ M^-1. The limit of detection (LOD) of cyanide by the receptor is found to be as low as 69 nM, which is much lower than the acceptable limit of cyanide in drinking water as set by the WHO (1.9 μM). Electrochemical studies support the termination of ICT transition upon addition of cyanide ion. Theoretical studies substantiate experimental findings and excimer formation. The receptor fluorometrically detects cyanide present in tap water and food materials such as cassava flour, almond and potato.

A new colorimetric and ratiometric fluorescent probe for selective recognition of cyanide in aqueous media

A simple naphthopyran derivative (L) has been synthesized as a colorimetric and ratiometric fluorescent probe for cyanide sensing in the aqueous DMSO medium and paper strips. The nucleophilic addition of CN^- to this probe blocks the π-conjugation and the intramolecular charge transfer (ICT) transition between naphthopyran and benzoindolium moieties and consequently results in remarkable color and spectral changes. Upon addition of cyanide, L displayed a ratiometric fluorescence response with a blue shift of the peak position and a noticeable color change from fuchsia to colorless within 90s. The probe exhibits high selectivity and sensitivity toward CN^- over other anions and the detection limit was calculated to be 7.56×10^-7M, which is well below the WHO cyanide standard in drinking water (1.9μM). In addition, the excitation and emission of the probe were within the visible wavelength range, which could benefit an application of the probe in an inexpensive portable cyanide sensor. The sensing ability of L has been successfully applied in real water samples. Furthermore, test strips based on L were fabricated, which can act as convenient and efficient test kits for detecting CN^-.

Theoretical study on the sensing mechanism of a fluorescence chemosensor for the cyanide anion

The sensing mechanism of the ratiometric fluorescence chemosensor 2-((6-(diethylamino)quinolin-2-yl)methylene)malononitrile (3A) for the cyanide anion (CN^-) has been investigated theoretically. The calculated results show that the small reaction barrier (8.58 kcal/mol) of 3A implies a rapid response speed to CN^-, and that the large interaction energy (25.75 kcal/mol) between 3A and CN^- indicates a high selectivity to CN^-. The results of condensed dual descriptor calculation confirm that CN^- attacks the C₂ site of 3A rather than other sites. The nucleophilic addition reaction of CN^- breaks the original conjugation structure of 3A and results in the redistribution of the charge. The frontier molecular orbitals (MOs) and the Hirshfeld population analysis demonstrate that the long-rang electronic transition between the diethylamino moiety and the dicyanovinyl group in 3A is cut off after the addition of CN^- and a local electronic transition between the quinoline and diethylamino moiety is formed. These changes lead to a blue shift (63 nm) of the fluorescence emission in the nucleophilic addition product (P) compare to 3A.

Anion Sensing by Novel Triarylboranes Containing Boraanthracene: DFT Functional Assessment, Selective Interactions, and Mechanism Demonstration

Analytical methods often involve expensive instrumentation and tedious sample pretreatment for an analyte detection. Being toxic and detrimental to human health, sensing of cyanide (CN-), fluoride (F-), chloride (Cl-), bromide (Br-), nitrate (NO3 -), acetate (CH3COO-), and bisulfate (HSO4 -) is performed by a boron-based molecular receptor, N,N,N,3,5-pentamethyl-4-{2-thia-9-boratricyclo[8.4.0.03,8]tetradeca-1(10),3(8),4,6,11,13-hexaen-9-yl}anili-nium (1), and the three newly designed receptors from it. Thermodynamics, electronic structure, and photophysical properties are computed by employing density functional theory (DFT) and time-dependent density functional theory (TD-DFT) to explore selective sensing of these anions and its mechanism. Free-energy changes (ΔG) and binding energies (ΔE) suggest that among these anions, only binding of CN- and F- is thermodynamically feasible with a very strong binding affinity with the receptors. Boron atoms containing positive natural charges act as the electrophilic centers to bind the anions involving a 2p-2p orbital overlap resulting in charge transfer. In the receptor-analyte complexes with CN- and F-, fluorescence is quenched due to the intramolecular charge transfer transitions (π-π* transitions in the case of the receptors lead to fluorescence), internal conversion, and associated configurational changes. Among the six tested functionals, CAM-B3LYP/6-31G(d) is found to be the most accurate one. The designed receptors are better fluorescent probes for F- and CN-, demonstrating their importance for the practical utility.

Fluorescence turn-on chemodosimetric sensing of cyanide by cyanovinylterpyridine modified phthalonitrile and subphthalocyanine

Terpyridine-attached phthalonitrile (Pn-TP) linked by cyanovinyl bond has been synthesized and employed for the preparation of subphthalocyanine (SubPc-TP) bearing conjugated terpyridine moieties. Both Pn-TP and SubPc-TP exhibited highly selective fluorescence turn-on in the presence of cyanide anions (CN^-) based on chemodosimetric sensing mechanism. The conjugation of the Pn-TP molecule was interrupted by the addition of CN^- at the cyanovinyl bond, showing the ratiometric fluorescence turn-on behavior. This sensing mechanism was further supported by density functional theory calculation and nuclear magnetic resonance titration studies. Optical and photophysical responses of SubPc-TP towards CN^- were also investigated, in which similar fluorescence enhancement was observed due to the addition of CN^- at the reactive boron trimer. The detection limit was estimated to be 94 nM, much below the World Health Organization-allowed level (1.9 μM) of CN^- in water.

An easy to make chemoreceptor for the selective ratiometric fluorescent detection of cyanide in aqueous solution and in food materials

A ratiometric fluorescent receptor selectively detects cyanide in aqueous solution and food materials via deprotonation of a phenolic hydroxyl group.

Highly Sensitive Ratiometric Chemosensor and Biomarker for Cyanide Ions in the Aqueous Medium

A newly designed cyanide-selective chemosensor based on chromone containing benzothiazole groups [3-(2,3-dihydro-benzothiazol-2-yl)-chromen-4-one (DBTC)] was synthesized and structurally characterized by physico-chemical, spectroscopic, and single-crystal X-ray diffraction analyses. The compound DBTC can detect cyanide anions based on nucleophilic addition as low as 5.76 nM in dimethyl sulfoxide-N-(2-hydroxyethyl)piperazine-N'-ethanesulfonic acid buffer (20 mM, pH 7.4) (v/v = 1:3). The binding mode between receptor DBTC and cyanide nucleophile has also been demonstrated by experimental studies using various spectroscopic tools and theoretical studies, and the experimental work has also been verified by characterizing one supporting compound of similar probable structure of the final product formed between DBTC and cyanide ion (DBTC-CN compound) by single-crystal X-ray analysis for detailed structural analyses. In theoretical study, density functional theory procedures have been used to calculate the molecular structure and the calculation of the Fukui function for evaluation of the electrophilic properties of each individual acceptor atom. Furthermore, the efficacy of the probe (DBTC) to detect the distribution of CN^- ions in living cells has been checked by acquiring the fluorescence image using a confocal microscope. Notably, the paper strips with DBTC were prepared, and these could serve as efficient and suitable CN^- test kits successfully.

Fluorescence light-up detection of cyanide in water based on cyclization reaction followed by ESIPT and AIEE

Schiff base 1 (2,4-di-tert-butyl-6-((2-hydroxyphenyl-imino)-methyl)phenol) containing two hydroxyl groups could undergo an oxidative cyclization reaction and then generate hydroxyphenylbenzoxazole (HBO) 2 when CN^- was present as a catalyst. The multistep cyclization reaction was proved by spectroscopy, ¹H NMR, ¹³C NMR and mass spectra. C[double bond, length as m-dash]N isomerization is the predominant decay process of the excited states, so sensor 1 is weakly emissive in solution at ambient temperature. When 1 reacts with CN^-, the emission is remarkably enhanced, where 1 is converted to 2. The cyclization product HBO 2 displays bright green luminescence in micellar due to the ESIPT (excited-state intramolecular proton transfer) as well as AIEE (aggregation-induced emission enhancement) effect. The detection limit is 5.92 × 10^-7 M, lower than the WHO guideline of CN^- in drinking water (1.9 μM). The selective and competitive experiments reveal that sensor 1 shows high sensing selectivity and sensitivity for CN^- over other anions. Test papers containing absorbed 1 were prepared and applied for practical application of cyanide detection.

A highly selective fluorescent probe for cyanide ion and its detection mechanism from theoretical calculations

A new cyanide probe has been prepared by one-step synthesis and evaluated by UV-vis and fluorescent method. This probe is combined by a fluorene part and a hemicyanine group through a conjugated linker, which is found to show rapid response, high selectivity and sensitivity for cyanide anions with significant dual colorimetric and fluorescent signal changes in aqueous solution. An intramolecular charge transfer (ICT) effect plays a key role in the CN^- sensing properties, and the details of this mechanism are further supported by DFT and TD-DFT calculations. The theoretical study shows that the introduction of CN^- twists the original plane structure and blocks the ICT process in the whole molecule, which brings about the absorption blue-shift and the fluorescence quenching.

A theoretical study on anion sensing mechanism of multi-phosphonium triarylboranes: intramolecular charge transfer and configurational changes

The binding selectivity and recognition mechanism of a series of mono-, di- and triphosphonium substituted triarylboranes: (4-(dimesitylboryl)-3,5-dimethylphenyl)phosphonium ([Mes₂BAr^P]⁺, 1), 1,1'-mesitylboranediylbis(3,5-dimethylphenyl)phosphonium ([MesBAr^P₂]²⁺, 2) and 1,1',1''-boranetriyltris(3,5-dimethylphenyl)phosphonium ([BAr^P₃]³⁺, 3) where Ar^P = 4-(H₃P)-2,6-Me₂-C₆H₂, for various anions has been investigated by employing density functional theory (DFT) and time dependent-density functional theory (TD-DFT) methods. Natural population analysis indicates the electrophilic nature of the boron centers in 1-3 for the nucleophilic addition of anions. The calculated free energy changes (ΔG) reveal that out of CN^-, F^-, Cl^-, Br^-, NO₃^-, CH₃COO^- and HSO₄^- only the binding of CN^- and F^- with 1, 2 and 3 is thermodynamically feasible. In addition, the calculated binding energies reflect that CN^- shows lesser binding affinity than F^- with 1, 2 and 3. Frontier molecular orbital (FMO) analysis reveals that the first excited states (S₁) of 1-3 are the local excited states with a π → π* transition, whereas the third excited state (S₃), fifth excited state (S₅), fourth excited state (S₄) and fourth excited states (S₄) of [Mes₂BAr^P]⁺F (1F, the fluoro form of 1), [MesBAr^P₂]²⁺F (2F, the fluoro form of 2), [Mes₂BAr^P]⁺CN (1CN, the cyano form of 1) and [MesBAr^P₂]²⁺CN (2CN, the cyano form of 2), respectively, are charge separation states found to be responsible for the intramolecular charge transfer (ICT) process. The partial configuration changes and ICT induce fluorescence quenching in 1F, 2F, 1CN and 2CN synergistically after an internal conversion (IC) from their respective S₃, S₅, S₄ and S₄ to S₁.

Simple and modular design platform of bimodal turn-on chemodosimeters for oxophilic metal cations

Three chemodosimeters that exhibit up to 3000-fold enhancement in turn-on visible colour and emission in the presence of oxophilic metal cations.

Selective Complexation of Cyanide and Fluoride Ions with Ammonium Boranes: A Theoretical Study on Sensing Mechanism Involving Intramolecular Charge Transfer and Configurational Changes

The anion binding selectivity and the recognition mechanism of two isomeric boranes, namely, 4-[bis(2,4,6-trimethylphenyl)boranyl]-N,N,N-trimethylaniline ([p-(Mes₂B)C₆H₄(NMe₃)]⁺, 1, where "Mes" represents mesitylene and "Me" represents methyl) and 2-[bis(2,4,6-trimethylphenyl)boranyl]-N,N,N-trimethylaniline ([o-(Mes₂B)C₆H₄(NMe₃)]⁺, 2) has been investigated using density functional theory (DFT) and time dependent-density functional theory (TD-DFT) methods. Natural population analysis indicates that the central boron atoms in 1 and 2 are the most active centers for nucleophilic addition of anions. The negative magnitude of free energy changes (ΔG) reveals that out of CN^-, F^-, Cl^-, Br^-, NO₃^-, and HSO₄^- only the binding of CN^- and F^- with 1 and 2 is thermodynamically feasible and spontaneous. In addition, the calculated binding energies reveal that the CN^- is showing lesser binding affinity than F^- both with 1 and 2, while other ions, viz. NO₃^-, HSO₄^-, Br^-, and Cl^-, either do not bind at all or show very insignificant binding energy. The first excited states (S₁) of 1 and 2 are shown to be the local excited states with π → σ* transition by frontier molecular orbital analysis, whereas fourth excited states (S₄) of 4-[bis(2,4,6-trimethylphenyl)boranyl]-N,N,N-trimethylaniline cyanide ([p-(Mes₂B)C₆H₄(NMe₃)] CN, 1CN, the cyano form of 1) and 4-[bis(2,4,6-trimethylphenyl)boranyl]-N,N,N-trimethylaniline fluoride ([p-(Mes₂B)C₆H₄(NMe₃)] F, 1F, the fluoro form of 1) and fifth excited state (S₅) of 2-[bis(2,4,6-trimethylphenyl)boranyl]-N,N,N-trimethylaniline fluoride ([o-(Mes₂B)C₆H₄(NMe₃)] F, 2F, the fluoro form of 2) are charge separation states that are found to be responsible for the intramolecular charge transfer (ICT) process. The synergistic effect of ICT and partial configuration changes induce fluorescence quenching in 1CN, 1F, and 2F after a significant internal conversion (IC) from S₄ and S₅ to S_1.

Naphthalimide–coumarin conjugate: ratiometric fluorescent receptor for self-calibrating quantification of cyanide anions in cells

A naphthalimide–coumarin conjugate shows invariable green fluorescence and CN⁻-selective blue fluorescence, and facilitates rapid (within 3 min) and sensitive (1.8 μM) ratiometric detection of CN⁻ in cells.

A benzopyrylium–phenothiazine conjugate of a flavylium derivative as a fluorescent chemosensor for cyanide in aqueous media and its bioimaging

A new benzopyrylium–phenothizine conjugate (BP) has been synthesized for CN⁻sensing.

Triphenylamine based lab-on-a-molecule for the highly selective and sensitive detection of Zn2+ and CN− in aqueous solution

A triphenylamine based lab-on-a-molecule TATP was designed and synthesized as a bifunctional sensor for the detection of Zn²⁺ and CN⁻ through fluorescence and UV-Vis absorption channels, with detection limits of 14 nM and 0.37 μM, respectively.

Off–on fluorometric detection of cyanide anions in an aqueous mixture by an indane-based receptor

An indanedione–coumarin conjugate behaves as an off–on type fluorescent receptor for rapid, selective, and sensitive detection of cyanide anions in an aqueous mixture via a nucleophilic interaction with the electrophilic β-carbon of the receptor.

A pyrylium–coumarin dyad as a colorimetric receptor for ratiometric detection of cyanide anions by two absorption bands in the visible region

A pyrylium–coumarin dyad behaves as a colorimetric receptor for ratiometric detection of cyanide anions in aqueous media by two absorption bands in the visible wavelength region.

Benzoindolium–triarylborane conjugates: a ratiometric fluorescent chemodosimeter for the detection of cyanide ions in aqueous medium

A new ratiometric fluorescent chemodosimeter has been synthesized and characterized that exhibits high selectivity and sensitivity toward CN⁻ ions in aqueous medium.