1
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Kongsak C, Chiangraeng N, Rithchumpon P, Nimmanpipug P, Meepowpan P, Tuntulani T, Thavornyutikarn P. Turn-on fluorogenic sensors based on an anthraquinone signaling unit for the detection of Zn(II) and Cd(II) ions. Org Biomol Chem 2023; 21:7367-7381. [PMID: 37655509 DOI: 10.1039/d3ob01223a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
Turn-on fluorescent chemosensors based on an anthraquinone moiety, N,N'-(9,10-dioxo-9,10-dihydroanthracene-1,8-diyl)bis(2-(bis(pyridin-2-ylmethyl)amino)acetamide) (1) and N,N'-(9,10-dioxo-9,10-dihydroanthracene-2,6-diyl)bis(2-(bis(pyridin-2-ylmethyl)amino)acetamide) (2), have been successfully synthesized with the overall yields of 61% and 90%, respectively. The structures of both chemosensors 1 and 2 were elucidated using several spectroscopic techniques such as 1H NMR, 13C NMR, 2D-NMR, FTIR and HRMS. The target chemosensor 1 is a promising tool for the detection of trace levels of d10 metal ions, such as Zn(II) and Cd(II) ions, by exhibiting a significant fluorescence enhancement via a turn-on photoinduced electron transfer (PET) mechanism with a rapid and highly reproducible signal, and low detection limit values of 0.408 μM and 0.246 μM, for Zn(II) and Cd(II), respectively.
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Affiliation(s)
- Chawanakorn Kongsak
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
- Graduate School, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand
| | - Natthiti Chiangraeng
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
| | - Puracheth Rithchumpon
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
| | - Piyarat Nimmanpipug
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Puttinan Meepowpan
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Thawatchai Tuntulani
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Road, Patumwan Bangkok 10330, Thailand
| | - Praput Thavornyutikarn
- Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Kaew Rd, Chiang Mai 50200, Thailand.
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai 50200, Thailand
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2
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Lei M, Ge F, Zheng H. Stable Cd Metal-Organic Framework as a Multiresponsive Luminescent Biosensor for Rapid, Accurate, and Recyclable Detection of Hippuric Acid, Nucleoside Phosphates, and Fe 3+ in Urine and Serum. Inorg Chem 2022; 61:11243-11251. [PMID: 35834304 DOI: 10.1021/acs.inorgchem.2c01313] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Detecting biomarkers associated with diseases has significant meaning for early prevention, diagnosis, and treatment of diseases. The development of luminescent biosensors for rapid and accurate detection in real urine and serum is urgently desired for human health monitoring. Herein, a luminescent cadmium metal-organic framework, {[Cd(L)(bpbix)]·x(solv)}n (1), was successfully prepared by using a urea-functionalized dicarboxylate ligand, 5-(3-(pyridin-4-yl)ureido)isophthalic acid (H2L), 4,4'-bis((1H-imidazol-1-yl)methyl)biphenyl (bpbix), and the Cd2+ ion. The structure of 1 presents a 2-fold interpenetrating three-dimensional pillared-layer framework. The complex 1 exhibits good stability in different-pH aqueous solutions and physiological fluids. Strikingly, the complex 1 shows quick response, high sensitivity, good anti-interference performance, and a recyclable ability for simultaneous sensing of hippuric acid (HA), nucleoside phosphates, and Fe3+ in water. More significantly, this sensor can realize the sensitive and accurate detection of HA, nucleoside phosphates, and Fe3+ in real urine and serum and meet the practical detection needs in clinical diagnosis. These results indicate that the complex 1 as a multiresponsive luminescent biosensor possesses great potential for practical detection of HA, nucleoside phosphates, and Fe3+ in biological samples.
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Affiliation(s)
- Mingyuan Lei
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, P. R. China
| | - Fayuan Ge
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, P. R. China
| | - Hegen Zheng
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, P. R. China
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3
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López-Alled CM, Park SJ, Lee DJ, Murfin LC, Kociok-Köhn G, Hann JL, Wenk J, James TD, Kim HM, Lewis SE. Azulene-based fluorescent chemosensor for adenosine diphosphate. Chem Commun (Camb) 2021; 57:10608-10611. [PMID: 34570136 DOI: 10.1039/d1cc04122c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
AzuFluor® 435-DPA-Zn, an azulene fluorophore bearing two zinc(II)-dipicolylamine receptor motifs, exhibits fluorescence enhancement in the presence of adenosine diphosphate. Selectivity for ADP over ATP, AMP and PPi results from appropriate positioning of the receptor motifs, since an isomeric sensor cannot discriminate between ADP and ATP.
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Affiliation(s)
- Carlos M López-Alled
- Department of Chemistry, University of Bath, Bath, BA2 7AY, UK. .,Centre for Sustainable Circular Technologies, University of Bath, Bath, BA2 7AY, UK.
| | - Sang Jun Park
- Department of Energy Systems Research, Ajou University, Suwon 443-749, South Korea.
| | - Dong Joon Lee
- Department of Energy Systems Research, Ajou University, Suwon 443-749, South Korea.
| | - Lloyd C Murfin
- Department of Chemistry, University of Bath, Bath, BA2 7AY, UK.
| | - Gabriele Kociok-Köhn
- Material and Chemical Characterisation Facility (MC2), University of Bath, Bath, BA2 7AY, UK
| | - Jodie L Hann
- Department of Chemistry, University of Bath, Bath, BA2 7AY, UK.
| | - Jannis Wenk
- Centre for Sustainable Circular Technologies, University of Bath, Bath, BA2 7AY, UK. .,Department of Chemical Engineering, University of Bath, Bath, BA2 7AY, UK
| | - Tony D James
- Department of Chemistry, University of Bath, Bath, BA2 7AY, UK. .,Centre for Sustainable Circular Technologies, University of Bath, Bath, BA2 7AY, UK. .,School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang 453007, China
| | - Hwan Myung Kim
- Department of Energy Systems Research, Ajou University, Suwon 443-749, South Korea.
| | - Simon E Lewis
- Department of Chemistry, University of Bath, Bath, BA2 7AY, UK. .,Centre for Sustainable Circular Technologies, University of Bath, Bath, BA2 7AY, UK.
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4
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Reinke L, Koch M, Müller-Renno C, Kubik S. Selective sensing of adenosine monophosphate (AMP) over adenosine diphosphate (ADP), adenosine triphosphate (ATP), and inorganic phosphates with zinc(II)-dipicolylamine-containing gold nanoparticles. Org Biomol Chem 2021; 19:3893-3900. [PMID: 33949587 DOI: 10.1039/d1ob00341k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Mixed monolayer-protected gold nanoparticles containing surface-bound triethylene glycol and dipicolylamine groups aggregated in water/methanol, 1 : 2 (v/v) in the presence of nucleotides, if the solution also contained zinc(ii) nitrate to convert the dipicolylamine units into the corresponding zinc complexes. Nanoparticle aggregation could be followed with the naked eye by the colour change of the solution from red to purple followed by nanoparticle precipitation. The sensitivity was highest for adenosine triphosphate (ATP), which could be detected at concentrations >10 μM, and decreased over adenosine diphosphate (ADP) to adenosine monophosphate (AMP), consistent with the typically higher affinity of zinc(ii)-dipicolylamine-derived receptors for higher charged nucleotides. Inorganic sodium diphosphate and triphosphate interfered in the assay by also inducing nanoparticle aggregation. However, while the nucleotide-induced aggregates persisted even at higher analyte concentrations, the nanoparticles that were precipitated with inorganic salts redissolved again when the salt concentration was increased. The thus resulting solutions retained their ability to respond to nucleotides, but they now preferentially responded to AMP. Accordingly, AMP could be sensed selectively at concentrations ≥50 μM in an aqueous environment, even in the presence of other nucleotides and inorganic anions. This work thus introduces a novel approach for the sensing of a nucleotide that is often the most difficult analyte to detect with other assays.
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Affiliation(s)
- Lena Reinke
- Technische Universität Kaiserslautern, Fachbereich Chemie - Organische Chemie, Erwin-Schrödinger-Straße 54, 67663 Kaiserslautern, Germany.
| | - Marcus Koch
- INM - Leibniz Institute for New Materials, Campus D2 2, 66123 Saarbrücken, Germany
| | - Christine Müller-Renno
- Technische Universität Kaiserslautern, Fachbereich Physik und Forschungszentrum OPTIMAS, AG Grenzflächen, Nanomaterialien und Biophysik, Erwin-Schrödinger-Straße 56, 67663 Kaiserslautern, Germany
| | - Stefan Kubik
- Technische Universität Kaiserslautern, Fachbereich Chemie - Organische Chemie, Erwin-Schrödinger-Straße 54, 67663 Kaiserslautern, Germany.
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5
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Kumar N, Roopa, Bhalla V, Kumar M. Beyond zinc coordination: Bioimaging applications of Zn(II)-complexes. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2020.213550] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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6
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Kim J, Oh J, Han MS. Versatile small molecule kinase assay through real-time, ratiometric fluorescence changes based on a pyrene-DPA-Zn2+ complex. RSC Adv 2021; 11:10375-10380. [PMID: 35423495 PMCID: PMC8695712 DOI: 10.1039/d1ra01547h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 03/04/2021] [Indexed: 01/01/2023] Open
Abstract
A real-time kinase assay method based on a ratiometric fluorescence probe that can be applied to various small-molecule kinases is described herein. The probe can trace the reversible interchange of ATP and ADP, which is a common phenomenon in most small-molecule kinase reactions, by a ratiometric fluorescence change. This property facilitates the monitoring of phosphorylation and dephosphorylation in small-molecule kinases, whereas most of the existing methods focus on one of these reactions. To prove the applicability of this method for small-molecule kinase assays, hexokinase and creatine kinase, which phosphorylate and dephosphorylate substrates, respectively, were analyzed. The ratiometric fluorescence change was correlated with the enzyme activity, and the inhibition efficiencies of the well-known inhibitors, N-benzoyl-d-glucosamine and iodoacetamide, were also monitored. Notably, the change in fluorescence can be observed with a simple light source by the naked eye. A versatile assay system that can be trace both phosphorylation and dephosphorylation by small molecule kinase is demonstrated, and can be applied regardless of substrate diversity.![]()
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Affiliation(s)
- Jihoon Kim
- Department of Chemistry
- Gwangju Institute of Science and Technology (GIST)
- Gwangju 61005
- Republic of Korea
| | - Jinyoung Oh
- Department of Chemistry
- Gwangju Institute of Science and Technology (GIST)
- Gwangju 61005
- Republic of Korea
| | - Min Su Han
- Department of Chemistry
- Gwangju Institute of Science and Technology (GIST)
- Gwangju 61005
- Republic of Korea
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7
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Butler SJ, Jolliffe KA. Anion Receptors for the Discrimination of ATP and ADP in Biological Media. Chempluschem 2020; 86:59-70. [DOI: 10.1002/cplu.202000567] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 09/29/2020] [Indexed: 12/28/2022]
Affiliation(s)
- Stephen J. Butler
- Department of Chemistry Loughborough University Loughborough LE11 3TU United Kingdom
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8
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Kanagaraj K, Xiao C, Rao M, Fan C, Borovkov V, Cheng G, Zhou D, Zhong Z, Su D, Yu X, Yao J, Hao T, Wu W, Chruma JJ, Yang C. A Quinoline-Appended Cyclodextrin Derivative as a Highly Selective Receptor and Colorimetric Probe for Nucleotides. iScience 2020; 23:100927. [PMID: 32169819 PMCID: PMC7066246 DOI: 10.1016/j.isci.2020.100927] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 01/18/2020] [Accepted: 02/13/2020] [Indexed: 01/03/2023] Open
Abstract
The design and development of specific recognition and sensing systems for biologically important anionic species has received growing attention in recent years, as they play significant roles in biology, pharmacy, and environmental sciences. Herein, a new supramolecular sensing probe L1 was developed for highly selective differentiation of nucleotides. L1 displayed extremely marked absorption and emission differentiation upon binding with nucleotide homologs of AMP, ADP, and ATP, due to the divergent spatial orientations of guests upon binding, which allowed for a naked-eye colorimetric differentiation for nucleotides. A differentiating mechanism was unambiguously rationalized by using various spectroscopic studies and theoretical calculations. Furthermore, we successfully demonstrated that L1 can be applied to the real-time monitoring of the enzyme-catalyzed phosphorylation/dephosphorylation processes and thus demonstrated an unprecedented visualizable strategy for selectively differentiating the structurally similar nucleotides and real-time monitoring of biological processes via fluorescent and colorimetric changes.
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Affiliation(s)
- Kuppusamy Kanagaraj
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Chao Xiao
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Ming Rao
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Chunying Fan
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Victor Borovkov
- College of Chemistry and Materials Science, South-Central University for Nationalities, Wuhan 430074, China.
| | - Guo Cheng
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Dayang Zhou
- Comprehensive Analysis Center, ISIR, Osaka University, Japan
| | - Zhihui Zhong
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Dan Su
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Xingke Yu
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Jiabin Yao
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Taotao Hao
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Wanhua Wu
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China.
| | - Jason J Chruma
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China
| | - Cheng Yang
- Key Laboratory of Green Chemistry & Technology, College of Chemistry, State Key Laboratory of Biotherapy, West China Medical Center, and Healthy Food Evaluation Research Center, Sichuan University, Chengdu 610064, China.
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9
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Bansal D, Gupta R. Selective sensing of ATP by hydroxide-bridged dizinc(ii) complexes offering a hydrogen bonding cavity. Dalton Trans 2020; 48:14737-14747. [PMID: 31549128 DOI: 10.1039/c9dt02404b] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This work illustrates the highly selective fluorescence detection of ATP in the presence of other competing anions, such as AMP, ADP, PPi and other phosphates by using a set of hydroxide-bridged dizinc(ii) complexes offering a cavity lined with hydrogen bonds and other interactive forces. ATP, as a whole, was recognized by the synergic combination of Zn-phosphate bonding, ππ stacking between the adenine ring of ATP and the pyridine ring of the dizinc complex and hydrogen bonding interactions that modulate the cavity structure of the dizinc complexes.
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Affiliation(s)
- Deepak Bansal
- Department of Chemistry, University of Delhi, Delhi - 110 007, India.
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10
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Pal S, Ghosh TK, Ghosh R, Mondal S, Ghosh P. Recent advances in recognition, sensing and extraction of phosphates: 2015 onwards. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213128] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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11
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Li W, Gong X, Fan X, Yin S, Su D, Zhang X, Yuan L. Recent advances in molecular fluorescent probes for organic phosphate biomolecules recognition. CHINESE CHEM LETT 2019. [DOI: 10.1016/j.cclet.2019.07.056] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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12
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Agafontsev AM, Ravi A, Shumilova TA, Oshchepkov AS, Kataev EA. Molecular Receptors for Recognition and Sensing of Nucleotides. Chemistry 2018; 25:2684-2694. [PMID: 30289184 DOI: 10.1002/chem.201802978] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 10/05/2018] [Indexed: 12/15/2022]
Abstract
Nucleotides are constituents of nucleic acids and they have a variety of functions in cellular metabolism. Synthetic receptors and sensors are required to reveal the role of nucleotides in living organisms and mechanisms of signal transduction events. In recent years, a large number of nucleotide-selective synthetic receptors have been devised, which utilize different molecular designs and sensing mechanisms. This Minireview presents recent progress in the design of synthetic molecular receptors for selective recognition of nucleotides in aqueous solution. The binding properties of receptors and the origins of their selectivity for a particular nucleotide are discussed.
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Affiliation(s)
- Aleksandr M Agafontsev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany.,N. N. Vorozhtsov Institute of Organic Chemistry SB RAS, 9 Lavrentiev Avenue, 630090, Novosibirsk, Russia.,Novosibirsk State University, Pirogova St. 1, 630090, Novosibirsk, Russia
| | - Anil Ravi
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Tatiana A Shumilova
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Aleksandr S Oshchepkov
- Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russia
| | - Evgeny A Kataev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
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13
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Yang S, Feng W, Feng G. Development of a near-infrared fluorescent sensor with a large Stokes shift for sensing pyrophosphate in living cells and animals. Anal Chim Acta 2018; 1034:119-127. [DOI: 10.1016/j.aca.2018.05.076] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 05/25/2018] [Accepted: 05/30/2018] [Indexed: 10/14/2022]
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14
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Carreira-Barral I, Fernández-Pérez I, Mato-Iglesias M, de Blas A, Platas-Iglesias C, Esteban-Gómez D. Recognition of AMP, ADP and ATP through Cooperative Binding by Cu(II) and Zn(II) Complexes Containing Urea and/or Phenylboronic-Acid Moieties. Molecules 2018; 23:molecules23020479. [PMID: 29470445 PMCID: PMC6017333 DOI: 10.3390/molecules23020479] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Revised: 02/16/2018] [Accepted: 02/20/2018] [Indexed: 12/16/2022] Open
Abstract
We report a series of Cu(II) and Zn(II) complexes with different ligands containing a dipicolyl unit functionalized with urea groups that may contain or not a phenylboronic acid function. These complexes were designed for the recognition of phosphorylated anions through coordination to the metal ion reinforced by hydrogen bonds involving the anion and NH groups of urea. The complexes were isolated and several adducts with pyrophosphate were characterized using X-ray diffraction measurements. Coordination of one of the urea nitrogen atoms to the metal ion promoted the hydrolysis of the ligands containing 1,3-diphenylurea units, while ligands bearing 1-ethyl-3-phenylurea groups did not hydrolyze significantly at room temperature. Spectrophotometric titrations, combined with 1H and 31P NMR studies, were used in investigating the binding of phosphate, pyrophosphate (PPi), and nucleoside 5′-polyphosphates (AMP, ADP, ATP, CMP, and UMP). The association constants determined in aqueous solution (pH 7.0, 0.1 M MOPS) point to a stronger association with PPi, ADP, and ATP as compared with the anions containing a single phosphate unit. The [CuL4]2+ complex shows important selectivity for pyrophosphate (PPi) over ADP and ATP.
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Affiliation(s)
- Israel Carreira-Barral
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
- Departamento de Química, Facultad de Ciencias, Universidad de Burgos, 09001 Burgos, Spain.
| | - Isabel Fernández-Pérez
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
| | - Marta Mato-Iglesias
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
| | - Andrés de Blas
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
| | - Carlos Platas-Iglesias
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
| | - David Esteban-Gómez
- Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Centro de Investigacións Científicas Avanzadas (CICA), 15071 A Coruña, Galicia, Spain.
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15
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Xia P, Su Z, Sun J, Li D, Huang X. A Couple of Tripodal and Dipodal Fluorescent Sensors for Sequential “On-Off-On” Response to Cu2+
and ATP/ADP Recognition in Aqueous Solution. ChemistrySelect 2017. [DOI: 10.1002/slct.201702447] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Peng Xia
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering; Hubei Normal University; Huangshi 435002, P. R. China
| | - Zhenhong Su
- Hubei Provincial Key Laboratory of Occurrence and Intervention of Kidney Diseases, Medical College; Hubei Polytechnic University; Huangshi, Hubei, P. R. China
| | - Jingyu Sun
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering; Hubei Normal University; Huangshi 435002, P. R. China
| | - Duanzhuo Li
- Hubei Provincial Key Laboratory of Occurrence and Intervention of Kidney Diseases, Medical College; Hubei Polytechnic University; Huangshi, Hubei, P. R. China
| | - Xiaohuan Huang
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering; Hubei Normal University; Huangshi 435002, P. R. China
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16
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Rhaman MM, Powell DR, Hossain MA. Supramolecular Assembly of Uridine Monophosphate (UMP) and Thymidine Monophosphate (TMP) with a Dinuclear Copper(II) Receptor. ACS OMEGA 2017; 2:7803-7811. [PMID: 29214233 PMCID: PMC5709781 DOI: 10.1021/acsomega.7b01293] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2017] [Accepted: 10/31/2017] [Indexed: 05/14/2023]
Abstract
Understanding the intermolecular interactions between nucleotides and artificial receptors is crucial to understanding the role of nucleic acids in living systems. However, direct structural evidence showing precise interactions and bonding features of a nucleoside monophosphate (NMP) with a macrocycle-based synthetic molecule has not been provided so far. Herein, we present two novel crystal structures of uridine monophosphate (UMP) and thymidine monophosphate (TMP) complexes with a macrocycle-based dinuclear receptor. Structural characterization of these complexes reveals that the receptor recognizes UMP through coordinate-covalent interactions with phosphates and π-π stackings with nucleobases and TMP through coordinate-covalent interactions with phosphate groups. Furthermore, the receptor has been shown to effectively bind nucleoside monophosphates in the order of GMP > AMP > UMP > TMP > CMP in water at physiological pH, as investigated by an indicator displacement assay.
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Affiliation(s)
- Md Mhahabubur Rhaman
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
| | - Douglas R. Powell
- Department
of Chemistry and Biochemistry, University
of Oklahoma, Norman, Oklahoma 73019, United
States
| | - Md. Alamgir Hossain
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
- E-mail:
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Philips DS, Ghosh S, Sudheesh KV, Suresh CH, Ajayaghosh A. An Unsymmetrical Squaraine-Dye-Based Chemical Platform for Multiple Analyte Recognition. Chemistry 2017; 23:17973-17980. [DOI: 10.1002/chem.201703645] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Indexed: 12/31/2022]
Affiliation(s)
- Divya S. Philips
- Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
| | - Samrat Ghosh
- Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
| | - Karivachery V. Sudheesh
- Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
| | - Cherumuttathu H. Suresh
- Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
| | - Ayyappanpillai Ajayaghosh
- Chemical Sciences and Technology Division; CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
- Academy of Scientific and Innovative Research (AcSIR); CSIR-National Institute for Interdisciplinary Science; and Technology (CSIR-NIIST); Trivandrum 695019 India
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18
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Akdeniz A, Caglayan MG, Polivina I, Anzenbacher P. Detection and quantification of ATP in human blood serum. Org Biomol Chem 2016; 14:7459-62. [PMID: 27454442 DOI: 10.1039/c6ob01378c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Two fluorometric sensors based on the tri-serine tri-lactone scaffold and thiourea or sulfonamide moieties serving as hydrogen bond donors allowing for anion binding are described. The sensor utilizing thiourea as a recognition moiety shows fluorescence enhancement while the sensor with sulfonamide shows quenching upon addition of phosphates. Sensor arrays composed of two sensors are able to discriminate structurally similar organic phosphates in the presence of interferents in human blood serum. The quantitative analysis of ATP in human blood serum shows high accuracy (the root mean square error of prediction, 1.65%) without requiring any sample pretreatment.
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Affiliation(s)
- Ali Akdeniz
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, U.S.A.
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Sahoo J, Arunachalam R, Subramanian PS, Suresh E, Valkonen A, Rissanen K, Albrecht M. Coordinatively Unsaturated Lanthanide(III) Helicates: Luminescence Sensors for Adenosine Monophosphate in Aqueous Media. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201604093] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Jashobanta Sahoo
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Rajendran Arunachalam
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Palani S. Subramanian
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Eringathodi Suresh
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Arto Valkonen
- University of Jyvaskyla; Department of Chemistry, Nanoscience Center; P.O. Box. 35 40014 University of Jyvaskyla Finland
| | - Kari Rissanen
- University of Jyvaskyla; Department of Chemistry, Nanoscience Center; P.O. Box. 35 40014 University of Jyvaskyla Finland
| | - Markus Albrecht
- Institut für Organische Chemie; RWTH Aachen University; Landoltweg 1 52074 Aachen Germany
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20
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Sahoo J, Arunachalam R, Subramanian PS, Suresh E, Valkonen A, Rissanen K, Albrecht M. Coordinatively Unsaturated Lanthanide(III) Helicates: Luminescence Sensors for Adenosine Monophosphate in Aqueous Media. Angew Chem Int Ed Engl 2016; 55:9625-9. [DOI: 10.1002/anie.201604093] [Citation(s) in RCA: 79] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Revised: 05/25/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Jashobanta Sahoo
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Rajendran Arunachalam
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Palani S. Subramanian
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Eringathodi Suresh
- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI); Academy of Scientific and Innovative Research (AcSIR); Bhavnagar 364002 Gujarat India
| | - Arto Valkonen
- University of Jyvaskyla; Department of Chemistry, Nanoscience Center; P.O. Box. 35 40014 University of Jyvaskyla Finland
| | - Kari Rissanen
- University of Jyvaskyla; Department of Chemistry, Nanoscience Center; P.O. Box. 35 40014 University of Jyvaskyla Finland
| | - Markus Albrecht
- Institut für Organische Chemie; RWTH Aachen University; Landoltweg 1 52074 Aachen Germany
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21
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Kaur H, Singh J, Chopra S, Raj P, Singh N, Kaur N. An organic–inorganic nanohybrid of a calix[4]arene based chromogenic chemosensor for simultaneous estimation of ADP and NADH. RSC Adv 2015. [DOI: 10.1039/c5ra18003a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Nanohybrids of a calix[4]arene based receptor have been employed for selective and simultaneous estimation of ADP and NADH.
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Affiliation(s)
- Harpreet Kaur
- Centre for Nanoscience and Nanotechnology (UIEAST)
- Panjab University
- Chandigarh
- India
| | - Jasminder Singh
- Department of Chemistry
- Indian Institute of Technology Ropar (IIT Ropar)
- Rupnagar
- India
| | - Shweta Chopra
- Centre for Nanoscience and Nanotechnology (UIEAST)
- Panjab University
- Chandigarh
- India
| | - Pushap Raj
- Department of Chemistry
- Indian Institute of Technology Ropar (IIT Ropar)
- Rupnagar
- India
| | - Narinder Singh
- Department of Chemistry
- Indian Institute of Technology Ropar (IIT Ropar)
- Rupnagar
- India
| | - Navneet Kaur
- Centre for Nanoscience and Nanotechnology (UIEAST)
- Panjab University
- Chandigarh
- India
- Department of Chemistry
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