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Marcus AH, Heussman D, Maurer J, Albrecht CS, Herbert P, von Hippel PH. Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy. Annu Rev Phys Chem 2023; 74:245-265. [PMID: 36696590 PMCID: PMC10590263 DOI: 10.1146/annurev-physchem-090419-041204] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The processes of genome expression, regulation, and repair require direct interactions between proteins and DNA at specific sites located at and near single-stranded-double-stranded DNA (ssDNA-dsDNA) junctions. Here, we review the application of recently developed spectroscopic methods and analyses that combine linear absorbance and circular dichroism spectroscopy with nonlinear 2D fluorescence spectroscopy to study the local conformations and conformational disorder of the sugar-phosphate backbones of ssDNA-dsDNA fork constructs that have been internally labeled with exciton-coupled cyanine (iCy3)2 dimer probes. With the application of these methods, the (iCy3)2 dimer can serve as a reliable probe of the mean local conformations and conformational distributions of the sugar-phosphate backbones of dsDNA at various critical positions. The results of our studies suggest a possible structural framework for understanding the roles of DNA breathing in driving the processes of protein-DNA complex assembly and function.
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Affiliation(s)
- Andrew H Marcus
- Center for Optical, Molecular and Quantum Science, University of Oregon, Eugene, Oregon, USA;
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, USA
- Department of Physics, University of Oregon, Eugene, Oregon, USA
| | - Dylan Heussman
- Center for Optical, Molecular and Quantum Science, University of Oregon, Eugene, Oregon, USA;
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, USA
| | - Jack Maurer
- Center for Optical, Molecular and Quantum Science, University of Oregon, Eugene, Oregon, USA;
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, USA
| | - Claire S Albrecht
- Center for Optical, Molecular and Quantum Science, University of Oregon, Eugene, Oregon, USA;
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Physics, University of Oregon, Eugene, Oregon, USA
| | - Patrick Herbert
- Center for Optical, Molecular and Quantum Science, University of Oregon, Eugene, Oregon, USA;
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, USA
| | - Peter H von Hippel
- Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, USA
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2
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Landmesser F, Sixt T, Dulitz K, Bruder L, Stienkemeier F. Two-dimensional electronic spectroscopy of an ultracold gas. OPTICS LETTERS 2023; 48:473-476. [PMID: 36638487 DOI: 10.1364/ol.477301] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 12/04/2022] [Indexed: 06/17/2023]
Abstract
Femtosecond coherent multidimensional spectroscopy is demonstrated for an ultracold gas. A setup for phase modulation spectroscopy is used to probe the 32S1/2-22P1/2,3/2 transition in an 800μK-cold sample of 7Li atoms confined in a magneto-optical trap. The observation of a double quantum coherence response, a signature of interparticle interactions, paves the way for detailed investigations of few- and many-body effects in ultracold gases using this technique. The experiment combines a frequency resolution of 3 GHz with a potential time resolution of 200 fs, which allows for high-resolution studies of ultracold atoms and molecules both in the frequency and in the time domain.
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3
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Uhl D, Wituschek A, Michiels R, Trinter F, Jahnke T, Allaria E, Callegari C, Danailov M, Di Fraia M, Plekan O, Bangert U, Dulitz K, Landmesser F, Michelbach M, Simoncig A, Manfredda M, Spampinati S, Penco G, Squibb RJ, Feifel R, Laarmann T, Mudrich M, Prince KC, Cerullo G, Giannessi L, Stienkemeier F, Bruder L. Extreme Ultraviolet Wave Packet Interferometry of the Autoionizing HeNe Dimer. J Phys Chem Lett 2022; 13:8470-8476. [PMID: 36054027 PMCID: PMC9486932 DOI: 10.1021/acs.jpclett.2c01619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 08/04/2022] [Indexed: 06/15/2023]
Abstract
Femtosecond extreme ultraviolet wave packet interferometry (XUV-WPI) was applied to study resonant interatomic Coulombic decay (ICD) in the HeNe dimer. The high demands on phase stability and sensitivity for vibronic XUV-WPI of molecular-beam targets are met using an XUV phase-cycling scheme. The detected quantum interferences exhibit vibronic dephasing and rephasing signatures along with an ultrafast decoherence assigned to the ICD process. A Fourier analysis reveals the molecular absorption spectrum with high resolution. The demonstrated experiment shows a promising route for the real-time analysis of ultrafast ICD processes with both high temporal and high spectral resolution.
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Affiliation(s)
- Daniel Uhl
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Andreas Wituschek
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Rupert Michiels
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Florian Trinter
- Institut
für Kernphysik, J. W. Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
- Molecular
Physics, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Till Jahnke
- Institut
für Kernphysik, J. W. Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
- European
XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Enrico Allaria
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Carlo Callegari
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Miltcho Danailov
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Michele Di Fraia
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Oksana Plekan
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Ulrich Bangert
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Katrin Dulitz
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Friedemann Landmesser
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Moritz Michelbach
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Alberto Simoncig
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Michele Manfredda
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Simone Spampinati
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Giuseppe Penco
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Richard James Squibb
- Department
of Physics, University of Gothenburg, Origovägen 6 B, 41296 Gothenburg, Sweden
| | - Raimund Feifel
- Department
of Physics, University of Gothenburg, Origovägen 6 B, 41296 Gothenburg, Sweden
| | - Tim Laarmann
- Deutsches
Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany
- The Hamburg
Centre for Ultrafast Imaging CUI, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Marcel Mudrich
- Department
of Physics and Astronomy, Aarhus University, Ny Munkegade 120, 8000 Aarhus, Denmark
| | - Kevin C. Prince
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
| | - Giulio Cerullo
- IFN-CNR
and Dipartimento di Fisica, Politecnico
di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Luca Giannessi
- Elettra-Sincrotrone
Trieste S.C.p.A., 34149 Basovizza, Trieste, Italy
- Istituto
Nazionale di Fisica Nucleare, Laboratori
Nazionali di Frascati, Via E. Fermi 40, 00044 Frascati, Roma
| | - Frank Stienkemeier
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Lukas Bruder
- Institute
of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany
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4
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High-resolution two-dimensional electronic spectroscopy reveals the homogeneous line profile of chromophores solvated in nanoclusters. Nat Commun 2022; 13:3350. [PMID: 35688839 PMCID: PMC9187667 DOI: 10.1038/s41467-022-31021-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 05/24/2022] [Indexed: 11/16/2022] Open
Abstract
Doped clusters in the gas phase provide nanoconfined model systems for the study of system-bath interactions. To gain insight into interaction mechanisms between chromophores and their environment, the ensemble inhomogeneity has to be lifted and the homogeneous line profile must be accessed. However, such measurements are very challenging at the low particle densities and low signal levels in cluster beam experiments. Here, we dope cryogenic rare-gas clusters with phthalocyanine molecules and apply action-detected two-dimensional electronic spectroscopy to gain insight into the local molecule-cluster environment for solid and superfluid cluster species. The high-resolution homogeneous linewidth analysis provides a benchmark for the theoretical modelling of binding configurations and shows a promising route for high-resolution molecular two-dimensional spectroscopy. Understanding the interaction of single chromophores with nanoparticles remains a challenging task in nanoscience. Here the authors provide insight into the interaction between isolated base-free phthalocyanine molecules and He and Ne nanoclusters in the gas phase using high-resolution two-dimensional spectroscopy.
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5
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Chen L, Dean JLS, Fournier JA. Time-Domain Vibrational Action Spectroscopy of Cryogenically Cooled, Messenger-Tagged Ions Using Ultrafast IR Pulses. J Phys Chem A 2021; 125:10235-10244. [PMID: 34788043 DOI: 10.1021/acs.jpca.1c01996] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Herein, we present the initial steps toward developing a framework that will enable the characterization of photoinitiated dynamics within large molecular ions in the gas phase with temporal and energy resolution. We combine the established techniques of tag-loss action spectroscopy on cryogenically trapped molecular ions with ultrafast vibrational spectroscopy by measuring the linear action spectrum of N2-tagged protonated diglycine (GlyGlyH+·N2) with an ultrafast infrared (IR) pulse pair. The presented time-domain data demonstrate that the excited-state vibrational populations in the tagged parent ions are modulated by the ultrafast IR pulse pair and encoded through the messenger tag-loss action response. The Fourier transform of the time-domain action interferograms yields the linear frequency-domain vibrational spectrum of the ion ensemble, and we show that this spectrum matches the linear spectrum collected in a traditional manner using a frequency-resolved IR laser. Time- and frequency-domain interpretations of the data are considered and discussed. Finally, we demonstrate the acquisition of nonlinear signals through cross-polarization pump-probe experiments. These results validate the prerequisite first steps of combining tag-loss action spectroscopy with two-dimensional IR spectroscopy for probing dynamics in gas-phase molecular ions.
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Affiliation(s)
- Liangyi Chen
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130 United States
| | - Jessika L S Dean
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130 United States
| | - Joseph A Fournier
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130 United States
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6
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Uhl D, Bruder L, Stienkemeier F. A flexible and scalable, fully software-based lock-in amplifier for nonlinear spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2021; 92:083101. [PMID: 34470399 DOI: 10.1063/5.0059740] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 07/24/2021] [Indexed: 06/13/2023]
Abstract
We demonstrate a cost-effective, fully software-based lock-in amplifier (LIA) implemented on a commercial computer. The device is designed for application in nonlinear spectroscopy, such as transient absorption and coherent multidimensional spectroscopy, but may also be used in any other application. The performance of our device is compared to a state-of-the-art commercial LIA with nearly identical results for both devices. Advantages of our device over commercial hardwired electronic LIAs are the improved flexibility in the data analysis and the possibility of arbitrary up-scaling of the number of LIA channels.
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Affiliation(s)
- D Uhl
- Institute of Physics, University of Freiburg, 79104 Freiburg, Germany
| | - L Bruder
- Institute of Physics, University of Freiburg, 79104 Freiburg, Germany
| | - F Stienkemeier
- Institute of Physics, University of Freiburg, 79104 Freiburg, Germany
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7
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Ames B, Buchleitner A, Carnio EG, Shatokhin VN. Pulse area dependence of multiple quantum coherence signals in dilute thermal gases. J Chem Phys 2021; 155:044306. [PMID: 34340375 DOI: 10.1063/5.0053673] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In the general framework of open quantum systems, we assess the impact of the pulse area on single and double quantum coherence (1QC and 2QC) signals extracted from fluorescence emitted by dilute thermal gases. We show that 1QC and 2QC signals are periodic functions of the pulse area, with distinctive features that reflect the particles' interactions via photon exchange, the polarizations of the laser pulses, and the observation direction.
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Affiliation(s)
- Benedikt Ames
- Physikalisches Institut, Albert-Ludwigs-Universität Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany
| | - Andreas Buchleitner
- Physikalisches Institut, Albert-Ludwigs-Universität Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany
| | - Edoardo G Carnio
- Physikalisches Institut, Albert-Ludwigs-Universität Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany
| | - Vyacheslav N Shatokhin
- Physikalisches Institut, Albert-Ludwigs-Universität Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany
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8
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Anda A, Cole JH. Two-dimensional spectroscopy beyond the perturbative limit: The influence of finite pulses and detection modes. J Chem Phys 2021; 154:114113. [PMID: 33752354 DOI: 10.1063/5.0038550] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Ultra-fast and multi-dimensional spectroscopy gives a powerful looking glass into the dynamics of molecular systems. In particular, two-dimensional electronic spectroscopy (2DES) provides a probe of coherence and the flow of energy within quantum systems, which is not possible with more conventional techniques. While heterodyne-detected (HD) 2DES is increasingly common, more recently fluorescence-detected (FD) 2DES offers new opportunities, including single-molecule experiments. However, in both techniques, it can be difficult to unambiguously identify the pathways that dominate the signal. Therefore, the use of numerically modeling of 2DES is vitally important, which, in turn, requires approximating the pulsing scheme to some degree. Here, we employ non-perturbative time evolution to investigate the effects of finite pulse width and amplitude on 2DES signals. In doing so, we identify key differences in the response of HD and FD detection schemes, as well as the regions of parameter space where the signal is obscured by unwanted artifacts in either technique. Mapping out parameter space in this way provides a guide to choosing experimental conditions and also shows in which limits the usual theoretical approximations work well and in which limits more sophisticated approaches are required.
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Affiliation(s)
- André Anda
- ARC Centre of Excellence in Exciton Science and Chemical and Quantum Physics, School of Science, RMIT University, Melbourne, Australia
| | - Jared H Cole
- ARC Centre of Excellence in Exciton Science and Chemical and Quantum Physics, School of Science, RMIT University, Melbourne, Australia
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9
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Kaneyasu T, Hikosaka Y, Fujimoto M, Iwayama H, Katoh M. Electron Wave Packet Interference in Atomic Inner-Shell Excitation. PHYSICAL REVIEW LETTERS 2021; 126:113202. [PMID: 33798343 DOI: 10.1103/physrevlett.126.113202] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 02/02/2021] [Indexed: 06/12/2023]
Abstract
We report the observation of quantum interference between electron wave packets launched from the inner-shell 4d orbital of the Xe atom. Using pairs of femtosecond radiation wave packets from a synchrotron light source, we obtain time-domain interferograms for the inner-shell excitations. This approach enables the experimental verification and control of the quantum interference between the electron wave packets. Furthermore, the femtosecond Auger decay of the inner-shell excited state is tracked. To the best of our knowledge, this is the first observation of wave packet interference in an atomic inner-shell process, and also the first time-resolved experiment on few-femtosecond Auger decay using a synchrotron light source.
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Affiliation(s)
- T Kaneyasu
- SAGA Light Source, Tosu 841-0005, Japan
- Institute for Molecular Science, Okazaki 444-8585, Japan
| | - Y Hikosaka
- Institute of Liberal Arts and Sciences, University of Toyama, Toyama 930-0194, Japan
| | - M Fujimoto
- Institute for Molecular Science, Okazaki 444-8585, Japan
- Sokendai (The Graduate University for Advanced Studies), Okazaki 444-8585, Japan
| | - H Iwayama
- Institute for Molecular Science, Okazaki 444-8585, Japan
- Sokendai (The Graduate University for Advanced Studies), Okazaki 444-8585, Japan
| | - M Katoh
- Institute for Molecular Science, Okazaki 444-8585, Japan
- Hiroshima Synchrotron Radiation Center, Hiroshima University, Higashi-Hiroshima 739-0046, Japan
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10
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Wituschek A, Bruder L, Allaria E, Bangert U, Binz M, Callegari C, Cinquegrana P, Danailov M, Demidovich A, Di Fraia M, Feifel R, Laarmann T, Michiels R, Mudrich M, Nikolov I, Piseri P, Plekan O, Charles Prince K, Przystawik A, Rebernic Ribič P, Sigalotti P, Stranges S, Uhl D, Giannessi L, Stienkemeier F. High-gain harmonic generation with temporally overlapping seed pulses and application to ultrafast spectroscopy. OPTICS EXPRESS 2020; 28:29976-29990. [PMID: 33114885 DOI: 10.1364/oe.401249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
Collinear double-pulse seeding of the High-Gain Harmonic Generation (HGHG) process in a free-electron laser (FEL) is a promising approach to facilitate various coherent nonlinear spectroscopy schemes in the extreme ultraviolet (XUV) spectral range. However, in collinear arrangements using a single nonlinear medium, temporally overlapping seed pulses may introduce nonlinear mixing signals that compromise the experiment at short time delays. Here, we investigate these effects in detail by extending the analysis described in a recent publication (Wituschek et al., Nat. Commun., 11, 883, 2020). High-order fringe-resolved autocorrelation and wave packet interferometry experiments at photon energies > 23 eV are performed, accompanied by numerical simulations. It turns out that both the autocorrelation and the wave-packet interferometry data are very sensitive to saturation effects and can thus be used to characterize saturation in the HGHG process. Our results further imply that time-resolved spectroscopy experiments are feasible even for time delays smaller than the seed pulse duration.
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11
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Wigner Time-Delay and Distribution for Polarization Interaction in Strongly Coupled Semiclassical Plasmas. ENTROPY 2020; 22:e22090910. [PMID: 33286679 PMCID: PMC7597152 DOI: 10.3390/e22090910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 08/17/2020] [Accepted: 08/17/2020] [Indexed: 11/23/2022]
Abstract
The quantum effect on the Wigner time-delay and distribution for the polarization scattering in a semiclassical dense plasma is explored. The partial wave analysis is applied for a partially ionized dense plasma to derive the phase shift for the polarization interaction. The Wigner time-delay and the Wigner distribution are derived for the electron–atom polarization interaction including the effects of quantum-mechanical characteristic and plasma screening. In this work, we show that the Wigner time-delay and the Wigner distribution for the polarization interaction can be suppressed by the quantum effect. The Wigner time-delay and the Wigner distribution are also significantly suppressed by the increase of plasma shielding. The variation of the Wigner time-delay and the Wigner distribution function due to quantum screening is discussed.
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12
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Tamimi A, Landes T, Lavoie J, Raymer MG, Marcus AH. Fluorescence-detected Fourier transform electronic spectroscopy by phase-tagged photon counting. OPTICS EXPRESS 2020; 28:25194-25214. [PMID: 32907046 DOI: 10.1364/oe.400245] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 08/03/2020] [Indexed: 06/11/2023]
Abstract
Fluorescence-detected Fourier transform (FT) spectroscopy is a technique in which the relative paths of an optical interferometer are controlled to excite a material sample, and the ensuing fluorescence is detected as a function of the interferometer path delay and relative phase. A common approach to enhance the signal-to-noise ratio in these experiments is to apply a continuous phase sweep to the relative optical path, and to detect the resulting modulated fluorescence using a phase-sensitive lock-in amplifier. In many important situations, the fluorescence signal is too weak to be measured using a lock-in amplifier, so that photon counting techniques are preferred. Here we introduce an approach to low-signal fluorescence-detected FT spectroscopy, in which individual photon counts are assigned to a modulated interferometer phase ('phase-tagged photon counting,' or PTPC), and the resulting data are processed to construct optical spectra. We studied the fluorescence signals of a molecular sample excited resonantly by a pulsed coherent laser over a range of photon flux and visibility levels. We compare the performance of PTPC to standard lock-in detection methods and establish the range of signal parameters over which meaningful measurements can be carried out. We find that PTPC generally outperforms the lock-in detection method, with the dominant source of measurement uncertainty being associated with the statistics of the finite number of samples of the photon detection rate.
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13
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Wituschek A, Bruder L, Klein LS, Strucka J, Demidovich A, Danailov MB, Stienkemeier F. Stable interferometric platform for phase modulation of seeded free-electron lasers. OPTICS LETTERS 2019; 44:943-946. [PMID: 30768026 DOI: 10.1364/ol.44.000943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 01/17/2019] [Indexed: 06/09/2023]
Abstract
We present a compact phase modulation setup designed for high laser intensities sufficient to drive highly nonlinear processes, such as high-gain harmonic generation in seeded free-electron lasers. This paves the way for all-extreme-ultravioloet coherent nonlinear spectroscopy. The high linearity, phase stability, and sensitivity of the setup are demonstrated by probing the quantum interference of electronic wave packets in the deep ultraviolet region (268 nm) combined with photoion time-of-flight mass spectrometry.
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14
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Bruder L, Eisfeld A, Bangert U, Binz M, Jakob M, Uhl D, Schulz-Weiling M, Grant ER, Stienkemeier F. Delocalized excitons and interaction effects in extremely dilute thermal ensembles. Phys Chem Chem Phys 2019; 21:2276-2282. [PMID: 30443651 PMCID: PMC6369671 DOI: 10.1039/c8cp05851b] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Long-range interparticle interactions are revealed in extremely dilute thermal atomic ensembles using highly sensitive nonlinear femtosecond spectroscopy. Delocalized excitons are detected in the atomic systems at particle densities where the mean interatomic distance (>10 μm) is much greater than the laser wavelength and multi-particle coherences should destructively interfere over the ensemble average. With a combined experimental and theoretical analysis, we identify an effective interaction mechanism, presumably of dipolar nature, as the origin of the excitonic signals. Our study implies that even in highly-dilute thermal atom ensembles, significant transition dipole-dipole interaction networks may form that require advanced modeling beyond the nearest neighbor approximation to quantitatively capture the details of their many-body properties.
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Affiliation(s)
- Lukas Bruder
- Institute of Physics, University of Freiburg, Hermann-Herder-Str. 3, 79104 Freiburg, Germany.
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15
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Bruder L, Bangert U, Binz M, Uhl D, Vexiau R, Bouloufa-Maafa N, Dulieu O, Stienkemeier F. Coherent multidimensional spectroscopy of dilute gas-phase nanosystems. Nat Commun 2018; 9:4823. [PMID: 30446649 PMCID: PMC6240067 DOI: 10.1038/s41467-018-07292-w] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Accepted: 10/25/2018] [Indexed: 12/20/2022] Open
Abstract
Two-dimensional electronic spectroscopy (2DES) is one of the most powerful spectroscopic techniques with unique sensitivity to couplings, coherence properties and real-time dynamics of a quantum system. While successfully applied to a variety of condensed phase samples, high precision experiments on isolated systems in the gas phase have been so far precluded by insufficient sensitivity. However, such experiments are essential for a precise understanding of fundamental mechanisms and to avoid misinterpretations. Here, we solve this issue by extending 2DES to isolated nanosystems in the gas phase prepared by helium nanodroplet isolation in a molecular beam-type experiment. This approach uniquely provides high flexibility in synthesizing tailored, quantum state-selected model systems of single and many-body character. In a model study of weakly-bound Rb2 and Rb3 molecules we demonstrate the method's unique capacity to elucidate interactions and dynamics in tailored quantum systems, thereby also bridging the gap to experiments in ultracold quantum science.
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Affiliation(s)
- Lukas Bruder
- Institute of Physics, University of Freiburg, 79104, Freiburg, Germany.
| | - Ulrich Bangert
- Institute of Physics, University of Freiburg, 79104, Freiburg, Germany
| | - Marcel Binz
- Institute of Physics, University of Freiburg, 79104, Freiburg, Germany
| | - Daniel Uhl
- Institute of Physics, University of Freiburg, 79104, Freiburg, Germany
| | - Romain Vexiau
- Laboratoire Aimé Cotton, CNRS, Université Paris-Sud, ENS Cachan, Université Paris-Saclay, 91405, Orsay Cedex, France
| | - Nadia Bouloufa-Maafa
- Laboratoire Aimé Cotton, CNRS, Université Paris-Sud, ENS Cachan, Université Paris-Saclay, 91405, Orsay Cedex, France
| | - Olivier Dulieu
- Laboratoire Aimé Cotton, CNRS, Université Paris-Sud, ENS Cachan, Université Paris-Saclay, 91405, Orsay Cedex, France
| | - Frank Stienkemeier
- Institute of Physics, University of Freiburg, 79104, Freiburg, Germany.,Freiburg Institute of Advanced Studies (FRIAS), University of Freiburg, Albertstr. 19, 79194, Freiburg, Germany
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16
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Abstract
Coherent two-dimensional (2D) optical spectroscopy has revolutionized our ability to probe many types of couplings and ultrafast dynamics in complex quantum systems. The dynamics and function of any quantum system strongly depend on couplings to the environment. Thus, studying coherent interactions for different environments remains a topic of tremendous interest. Here we introduce coherent 2D electronic mass spectrometry that allows 2D measurements on effusive molecular beams and thus on quantum systems with minimum system–bath interaction and employ this to identify the major ionization pathway of 3d Rydberg states in NO2. Furthermore, we present 2D spectra of multiphoton ionization, disclosing distinct differences in the nonlinear response functions leading to the ionization products. We also realize the equivalent of spectrally resolved transient-absorption measurements without the necessity for acquiring weak absorption changes. Using time-of-flight detection introduces cations as an observable, enabling the 2D spectroscopic study on isolated systems of photophysical and photochemical reactions. Multidimensional spectroscopy is a powerful tool in exploring photo-induced dynamics and electron coupling processes in molecules. Here the authors demonstrate coherent two-dimensional electronic mass spectrometry on molecular beams and its application to photoionization studies of the NO2 molecule.
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17
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Bruder L, Binz M, Stienkemeier F. Phase-synchronous undersampling in nonlinear spectroscopy. OPTICS LETTERS 2018; 43:875-878. [PMID: 29444016 DOI: 10.1364/ol.43.000875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2017] [Accepted: 01/14/2018] [Indexed: 06/08/2023]
Abstract
We introduce the concept of phase-synchronous undersampling in nonlinear spectroscopy. The respective theory is presented and validated experimentally in a phase-modulated quantum beat experiment by sampling high phase modulation frequencies with low laser repetition rates. The advantage of undersampling in terms of signal quality and reduced acquisition time is demonstrated, and breakdown conditions are identified. The presented method is particularly beneficial for experimental setups with limited signal/detection rates.
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18
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Bruder L, Bangert U, Stienkemeier F. Phase-modulated harmonic light spectroscopy. OPTICS EXPRESS 2017; 25:5302-5315. [PMID: 28380793 DOI: 10.1364/oe.25.005302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
By combining phase-modulated nonlinear spectroscopy with second harmonic generation, the concept of phase-modulated harmonic light spectroscopy is introduced. Simultaneous spectroscopy with different harmonics of the light is demonstrated and linear and nonlinear excitation of the spectroscopic sample is investigated. Sum frequency generation and stray light effects during temporal pulse overlap have been evaluated in detail, accompanied by simulations. The presented work provides a promising concept to facilitate coherent nonlinear time-domain spectroscopy in the extreme ultraviolet wavelength regime and contributes valuable insights for future studies in this direction.
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19
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von Vangerow J, Coppens F, Leal A, Pi M, Barranco M, Halberstadt N, Stienkemeier F, Mudrich M. Imaging Excited-State Dynamics of Doped He Nanodroplets in Real-Time. J Phys Chem Lett 2017; 8:307-312. [PMID: 27996261 DOI: 10.1021/acs.jpclett.6b02598] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The real-time dynamics of excited alkali metal atoms (Rb) attached to quantum fluid He nanodroplets is investigated using femtosecond imaging spectroscopy and time-dependent density functional theory. We disentangle the competing dynamics of desorption of excited Rb atoms off the He droplet surface and solvation inside the droplet interior as the Rb atom is ionized. For Rb excited to the 5p and 6p states, desorption occurs on starkly differing time scales (∼100 versus ∼1 ps, respectively). The comparison between theory and experiment indicates that desorption proceeds either impulsively (6p) or in a transition regime between impulsive dissociation and complex desorption (5p).
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Affiliation(s)
- Johannes von Vangerow
- Physikalisches Institut, Universität Freiburg , Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - François Coppens
- Laboratoire des Collisions, Agrégats, Réactivité, IRSAMC, UMR 5589, CNRS et Université Paul Sabatier-Toulouse 3, 118 route de Narbonne, F-31062 Toulouse Cedex 09, France
| | - Antonio Leal
- Departament FQA, Facultat de Física, and IN2UB, Universitat de Barcelona , Diagonal 645, 08028 Barcelona, Spain
| | - Martí Pi
- Departament FQA, Facultat de Física, and IN2UB, Universitat de Barcelona , Diagonal 645, 08028 Barcelona, Spain
| | - Manuel Barranco
- Laboratoire des Collisions, Agrégats, Réactivité, IRSAMC, UMR 5589, CNRS et Université Paul Sabatier-Toulouse 3, 118 route de Narbonne, F-31062 Toulouse Cedex 09, France
- Departament FQA, Facultat de Física, and IN2UB, Universitat de Barcelona , Diagonal 645, 08028 Barcelona, Spain
| | - Nadine Halberstadt
- Laboratoire des Collisions, Agrégats, Réactivité, IRSAMC, UMR 5589, CNRS et Université Paul Sabatier-Toulouse 3, 118 route de Narbonne, F-31062 Toulouse Cedex 09, France
| | - Frank Stienkemeier
- Physikalisches Institut, Universität Freiburg , Hermann-Herder-Str. 3, 79104 Freiburg, Germany
| | - Marcel Mudrich
- Physikalisches Institut, Universität Freiburg , Hermann-Herder-Str. 3, 79104 Freiburg, Germany
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20
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Zhang PP, Eisfeld A. Non-Perturbative Calculation of Two-Dimensional Spectra Using the Stochastic Hierarchy of Pure States. J Phys Chem Lett 2016; 7:4488-4494. [PMID: 27775345 DOI: 10.1021/acs.jpclett.6b02111] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Two-dimensional electronic spectroscopy has become an important experimental technique to obtain information on, for example, electronic coherences in large molecular complexes or vibronic couplings. For the correct interpretation of two-dimensional spectra, however, detailed theoretical calculations are required. Reliable theoretical calculations are impeded by large system sizes and large numbers of vibrational degrees of freedom that need to be explicitly taken into account. Here, we demonstrate that a numerical approach based on a stochastic hierarchy of pure states (HOPS) does allow the calculation of two-dimensional spectra, notwithstanding the stochasticity of the method. The number of coupled equations as well as the hierarchy depth shows a superior scaling with system size as compared to the previously developed hierarchical equations of motion (HEOM). Large systems thus become accessible for numerical calculation of two-dimensional spectra.
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Affiliation(s)
- Pan-Pan Zhang
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, D-01187 Dresden, Germany
| | - Alexander Eisfeld
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, D-01187 Dresden, Germany
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