Click catalysis and DNA conjugation using a nanoscale DNA/silver cluster pair

DNA-bound silver clusters are most readily recognized by their strong fluorescence that spans the visible and near-infrared regions. From this suite of chromophores, we chose a green-emitting Ag106+ bound to C4AC4TC3GT4 and describe how this DNA/cluster pair is also a catalyst. A DNA-tethered alkyne conjugates with an azide via cycloaddition, an inherently slow reaction that is facilitated through the joint efforts of the cluster and DNA. The Ag106+ structure is the catalytic core in this complex, and it has three distinguishing characteristics. It facilitates cycloaddition while preserving its stoichiometry, charge, and spectra. It also acidifies its nearby alkyne to promote H/D exchange, suggesting a silver-alkyne complex. Finally, it is markedly more efficient when compared with related multinuclear DNA-silver complexes. The Ag106+ is trapped within its C4AC4TC3GT4 host, which governs the catalytic activity in two ways. The DNA has orthogonal functional groups for both the alkyne and cluster, and these can be systematically separated to quench the click reaction. It is also a polydentate ligand that imprints an elongated shape on its cluster adduct. This extended structure suggests that DNA may pry apart the cluster to open coordination sites for the alkyne and azide reactants. These studies indicate that this DNA/silver cluster pair work together with catalysis directly driven by the silver cluster and indirectly guided by the DNA host.

Impact of metals on (star)dust chemistry: a laboratory astrophysics approach

Laboratory experiments are essential in exploring the mechanisms involved in stardust formation. One key question is how a metal is incorporated into dust for an environment rich in elements involved in stardust formation (C, H, O, Si). To address experimentally this question we have used a radiofrequency cold plasma reactor in which cyclic organosilicon dust formation is observed. Metallic (silver) atoms were injected in the plasma during the dust nucleation phase to study their incorporation in the dust. The experiments show formation of silver nanoparticles (~15 nm) under conditions in which organosilicon dust of size 200 nm or less is grown. The presence of AgSiO bonds, revealed by infrared spectroscopy, suggests the presence of junctions between the metallic nanoparticles and the organosilicon dust. Even after annealing we could not conclude on the formation of silver silicates, emphasizing that most of silver is included in the metallic nanoparticles. The molecular analysis performed by laser mass spectrometry exhibits a complex chemistry leading to a variety of molecules including large hydrocarbons and organometallic species. In order to gain insights into the involved chemical molecular pathways, the reactivity of silver atoms/ions with acetylene was studied in a laser vaporization source. Key organometallic species, Ag n C2H m (n=1-3; m=0-2), were identified and their structures and energetic data computed using density functional theory. This allows us to propose that molecular Ag-C seeds promote the formation of Ag clusters but also catalyze hydrocarbon growth. Throughout the article, we show how the developed methodology can be used to characterize the incorporation of metal atoms both in the molecular and dust phases. The presence of silver species in the plasma was motivated by objectives finding their application in other research fields than astrochemistry. Still, the reported methodology is a demonstration laying down the ground for future studies on metals of astrophysical interest such as iron.

Prolinamide plays a key role in promoting copper-catalyzed cycloaddition of azides and alkynes in aqueous media via unprecedented metallacycle intermediates

Room temperature copper-catalyzed cycloaddition of azides and alkynes (CuAAC) proceeds in the presence of a prolinamide ligand in aqueous media via unique metallacycles.

Deciphering the Mechanism of Silver Catalysis of “Click” Chemistry in Water by Combining Experimental and MEDT Studies

A combined experimental study and molecular electron density theory (MEDT) analysis was carried out to investigate the click of 1,2,3-triazole derivatives by Ag(I)-catalyzed azide-alkyne cycloaddition (AgAAC) reaction as well as its corresponding mechanistic pathway. Such a synthetic protocol leads to the regioselective formation of 1,4-disubstituted-1,2,3-triazoles in the presence of AgCl as catalyst and water as reaction solvent at room temperature and pressure. The MEDT was performed by applying Density Functional Theory (DFT) calculations at both B3LYP/6-31G(d,p) (LANL2DZ for Ag) and ωB97XD/6-311G(d,p) (LANL2DZ for Ag) levels with a view to decipher the observed regioselectivity in AgAAC reactions, and so to set out the number of silver(I) species and their roles in the formation of 1,4-disubstituted-1,2,3-triazoles. The comparison of the values of the energy barriers for the mono- and dinuclear Ag(I)-acetylide in the AgAAC reaction paths shows that the calculated energy barriers of dinuclear processes are smaller than those of the mononuclear one. The type of intramolecular interactions in the investigated AgAAC click chemistry reaction accounts for the regioselective formation of the 1,4-regiosisomeric triazole isomer. The ionic character of the starting compounds, namely Ag-acetylide, is revealed for the first time. This finding rules out any type of covalent interaction, involving the silver(I) complexes, along the reaction pathway. Electron localization function (ELF) topological analysis of the electronic structure of the stationary points reaffirmed the zw-type (zwitterionic-type) mechanism of the AgAAC reactions.

Ag–NHC anchored on silica: an efficient ultra-low loading catalyst for regioselective 1,2,3-triazole synthesis

A silica-supported silver complex, Ag–NHC@SiO₂, was prepared by an anchoring coordination technique, which was successfully employed for the click reaction under mild reaction conditions.

Assessment of reactivities with explicit and implicit solvent models: QM/MM and gas-phase evaluation of three different Ag-catalysed furan ring formation routes

A representative reaction illustrates cases where strong solvent–solute interactions can be sufficiently well captured by continuum solvation model rendering QM/MM unnecessary.

Synthesis of Sulfur-Containing Exo-Bicyclic Dienes and Their Diels-Alder Reactions To Access Thiacycle-Fused Polycyclic Systems

The stereocontrolled synthesis of unprecedented sulfur-containing exo-bicyclic 1,3-dienes is reported through a palladium-catalyzed reductive cyclization of sulfur-linked 2-bromoenynes. The fused bicyclic structure provides a better stability to the thiacyclic diene compared to the simple 3,4-dimethylenetetrahydrothiophene. Their reactivity toward several dienophiles has been investigated, and various original thiacycle-fused polycyclic systems have been obtained with high or total diastereoselectivity. Moreover, they are the first exo-bicyclic dienes used in Diels-Alder reactions. The relative configurations of four cycloadducts have been unambiguously assigned by X-ray crystallographic analysis. Mechanistic details of the cycloadditions have been examined by computational means.