1
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Vidyakina AA, Shtyrov AA, Ryazantsev MN, Khlebnikov AF, Kolesnikov IE, Sharoyko VV, Spiridonova DV, Balova IA, Bräse S, Danilkina NA. Development of Fluorescent Isocoumarin-Fused Oxacyclononyne - 1,2,3-Triazole Pairs. Chemistry 2023; 29:e202300540. [PMID: 37293937 DOI: 10.1002/chem.202300540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 06/02/2023] [Accepted: 06/09/2023] [Indexed: 06/10/2023]
Abstract
Fluorescent isocoumarin-fused cycloalkynes, which are reactive in SPAAC and give fluorescent triazoles regardless of the azide nature, have been developed. The key structural feature that converts the non-fluorescent cycloalkyne/triazole pair to its fluorescent counterpart is the pi-acceptor group (COOMe, CN) at the C6 position of the isocoumarin ring. The design of the fluorescent cycloalkyne/triazole pairs is based on the theoretical study of the S1 state deactivation mechanism of the non-fluorescent isocoumarin-fused cycloalkyne IC9O using multi-configurational ab initio and DFT methodologies. The calculations revealed that deactivation proceeds through the electrocyclic ring opening of the α-pyrone cycle and is accompanied by a redistribution of electron density in the fused benzene ring. We proposed that the S1 excited state deactivation barrier could be increased by introducing a pi-acceptor group into a position that is in direct conjugation with the formed C=O group and has a reduced electron density in the transition state. As a proof of concept, we designed and synthesized two fluorescent isocoumarin-fused cycloalkynes IC9O-COOMe and IC9O-CN bearing pi-acceptors at the C6 position. The importance of the nature of a pi-acceptor group was shown by the example of much less fluorescent CF3 -substituted cycloalkyne IC9O-CF3 .
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Affiliation(s)
- Aleksandra A Vidyakina
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Andrey A Shtyrov
- Nanotechnology Research and Education Centre RAS, Saint Petersburg Academic University, Sankt-Peterburg, 194021 Saint Petersburg, Russia
| | - Mikhail N Ryazantsev
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
- Nanotechnology Research and Education Centre RAS, Saint Petersburg Academic University, Sankt-Peterburg, 194021 Saint Petersburg, Russia
| | - Alexander F Khlebnikov
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Ilya E Kolesnikov
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Vladimir V Sharoyko
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Dar'ya V Spiridonova
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Irina A Balova
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
| | - Stefan Bräse
- Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), 76131, Karlsruhe, Germany
- Institute of Biological and Chemical Systems-, Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), 76344, Eggenstein-Leopoldshafen, Germany
| | - Natalia A Danilkina
- Institute of Chemistry, Saint Petersburg State University (SPbU), Sankt-Peterburg, 199034 Saint Petersburg, Russia
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2
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Horsten T, Dehaen W. 4,5,6,7-Tetrahydroindol-4-Ones as a Valuable Starting Point for the Synthesis of Polyheterocyclic Structures. Molecules 2021; 26:4596. [PMID: 34361747 PMCID: PMC8348459 DOI: 10.3390/molecules26154596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 11/17/2022] Open
Abstract
This review focuses on the synthesis of polyheterocyclic structures with a variety of medicinal and optoelectronic applications, starting from readily available 4,5,6,7-tetrahydroindol-4-one analogs. First, routes toward the 4,5,6,7-tetrahydroindol-4-one starting materials are summarized, followed by synthetic pathways towards polyheterocyclic structures which are categorized based on the size and attachment point of the newly formed (hetero)cyclic ring.
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Affiliation(s)
| | - Wim Dehaen
- Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium;
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3
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Huang J, Yan Z, Qiu P, Mo Y, Cao Q, Li Q, Huo L, Zhao L. A New Coumarin-Acridone Compound as a Fluorescence Probe for Fe 3+ and Its Application in Living Cells and Zebrafish. Molecules 2021; 26:molecules26082115. [PMID: 33917054 PMCID: PMC8067698 DOI: 10.3390/molecules26082115] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 03/31/2021] [Accepted: 04/01/2021] [Indexed: 11/16/2022] Open
Abstract
A new coumarin-acridone fluorescent probe S was designed and synthesized, and the structure was confirmed with 1H/13C NMR spectrometry, single-crystal X-ray diffraction, and high-resolution mass spectrometry. This probe has high sensitivity and selectivity for Fe3+ over other testing metal ions at 420 or 436 nm in acetonitrile-MOPS (3-Morpholinopropanesulfonic Acid) buffer solution (20.0 μM, pH = 6.9, 8:2 (v/v)). Under physiological conditions, the probe displayed satisfying time stability with a detection limit of 1.77 µM. In addition, probe S was successfully used to detect intracellular iron changes through a fluorescence-off mode, and the imaging results of cells and zebrafish confirmed their low cytotoxicity and satisfactory cell membrane permeability, as well as their potential biological applications.
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Affiliation(s)
| | | | | | | | | | | | - Lini Huo
- Correspondence: (L.H.); (L.Z.); Tel.: +86-07-71495-3513 (L.H. & L.Z.)
| | - Lichun Zhao
- Correspondence: (L.H.); (L.Z.); Tel.: +86-07-71495-3513 (L.H. & L.Z.)
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4
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Electron-donating methoxy group enhances the stability and efficiency of indole-based fluorescent probe for detecting Cu2+. RESEARCH ON CHEMICAL INTERMEDIATES 2020. [DOI: 10.1007/s11164-020-04275-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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5
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Affiliation(s)
- Suven Das
- Department of Chemistry Rishi Bankim Chandra College for Women Naihati 24-Parganas (N), Pin 743165 India
| | - Arpita Dutta
- Department of Chemistry Rishi Bankim Chandra Evening College Naihati, 24-Parganas (N), Pin 743165 India
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6
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Mal K, Naskar B, Chaudhuri T, Prodhan C, Goswami S, Chaudhuri K, Mukhopadhyay C. Synthesis of quinoline functionalized fluorescent chemosensor for Cu (II), DFT studies and its application in imaging in living HEK 293 cells. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112211] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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7
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Abd-Elmonem M, A. Mekheimer R, M. Hayallah A, A. Abo Elsoud F, U. Sadek K. Recent Advances in the Utility of Glycerol as a Benign and Biodegradable Medium in Heterocyclic Synthesis. CURR ORG CHEM 2020. [DOI: 10.2174/1385272823666191025150646] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
:
Glycerol is a non-toxic, recyclable and biodegradable organic waste produced
as a byproduct in the production of biodiesel fuel. Currently, glycerol is considered
a green solvent and catalyst for a large variety of applications. This work discusses
the significance of glycerol for heterocyclic synthesis. All the reported studies
consider glycerol as an efficient and sustainable benign medium.
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Affiliation(s)
- Mohamed Abd-Elmonem
- Department of Chemistry, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Ramadan A. Mekheimer
- Department of Chemistry, Faculty of Science, Minia University, Minia 61519, Egypt
| | - Alaa M. Hayallah
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Deraya University, Minia, Egypt
| | - Fatma A. Abo Elsoud
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Deraya University, Minia, Egypt
| | - Kamal U. Sadek
- Department of Chemistry, Faculty of Science, Minia University, Minia 61519, Egypt
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8
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Gornostaev LM, Fominykh OI, Lavrikova TI, Khalyavina YG, Gatilov YV, Stashina GA. Peculiarities of the Reaction of 2-Amino-1,4-naphthoquinones with 2,2-Dihydroxy-1H-indene-1,3(2H)-dione. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2020. [DOI: 10.1134/s1070428019110125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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9
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Gornostaev LM, Fominykh OI, Rukovets TA, Lavrikova TI, Khalyavina JG, Shtil AА, Shunaev AV, Dunaev SF, Murashova EV, Chernyshev VV. Synthesis of 6b,11b-dihydroxy-12-methylphenyl-11b,12-dihydrobenzo- [g]indeno[1,2-b]indole-5,6,7(6bH)-triones and 2-(3-hydroxy- 4,9-dioxo-4,9-dihydro-1H-benzo[f]indol-2-yl)benzamides, their structure and antiproliferative activity. Chem Heterocycl Compd (N Y) 2020. [DOI: 10.1007/s10593-020-02621-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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10
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Das S, Maity S, Ghosh P, Paul BK, Dutta A. Base Promoted Tandem Cyclization ofo‐Phenylenediamine with Ninhydrin‐phenol Adducts: An Unprecedented Route to Phenol Appended Isoindolo[2,1‐a]quinoxaline Fluorophore. ChemistrySelect 2019. [DOI: 10.1002/slct.201804069] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Suven Das
- Department of ChemistryRishi Bankim Chandra College for Women, Naihati 24-Parganas (N) Pin- 743165 India
| | - Suvendu Maity
- Department of ChemistryR K Mission Residential College, Narendrapur Kolkata- 103 India
| | - Prasanta Ghosh
- Department of ChemistryR K Mission Residential College, Narendrapur Kolkata- 103 India
| | - Bijan K. Paul
- Department of ChemistryMahadevananda Mahavidyalaya, Barrackpore Kolkata 700 120 India
| | - Arpita Dutta
- Department of ChemistryRishi Bankim Chandra Evening College Naihati, 24-Parganas (N), Pin- 743165 India
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11
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Rh(III)-catalyzed C-H activation of primary benzamides and tandem cyclization with cyclic 2-diazo-1,3-diketones for the synthesis of isocoumarins. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.10.045] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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12
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Datsenko VP, Nelyubina YV, Smol'yakov AF, Loginov DA. Cyclooctadiene iridium complexes [Cp*Ir(COD)X]+ (X = Cl, Br, I): Synthesis and application for oxidative coupling of benzoic acid with alkynes. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2018.08.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Mukherjee S, Hazra S, Chowdhury S, Sarkar S, Chattopadhyay K, Pramanik A. A novel pyrrole fused coumarin based highly sensitive and selective fluorescence chemosensor for detection of Cu2+ ions and applications towards live cell imaging. J Photochem Photobiol A Chem 2018. [DOI: 10.1016/j.jphotochem.2018.07.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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14
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Loginov DA, Konoplev VE. Oxidative coupling of benzoic acids with alkynes: Catalyst design and selectivity. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2017.11.013] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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15
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Loginov DA, Molotkov AP, Shepel' NE. Synthesis and fluorescence of 3,4,6,7,8,9-hexaphenyl-1H-benzo[g]isochromen-1-one. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2017.12.021] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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16
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Shpuntov PM, Kolodina AA, Uchuskin MG, Abaev VT. Furan Ring Opening - Pyridine Ring Closure: An Efficient Approach towards 6H
-Isochromeno[4,3-b
]pyridin-6-ones from Readily Available Furans and Phthalaldehydic Acid Methyl Esters. European J Org Chem 2018. [DOI: 10.1002/ejoc.201701355] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Pavel M. Shpuntov
- Institute of Food and Processing Industry; Kuban State Technological University; 2 Moskovskaya St. 350072 Krasnodar Russian Federation
| | - Alexandra A. Kolodina
- Institute of Physical and Organic Chemistry; Southern Federal University; 194/2 Stachka St. 344090 Rostov on Don Russian Federation
| | - Maxim G. Uchuskin
- Department of Chemistry; Perm State University; 15 Bukireva St. 614990 Perm Russian Federation
| | - Vladimir T. Abaev
- Department of Chemistry; North-Ossetian State University; 43-46 Vatutina St. 362025 Vladikavkaz Russian Federation
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17
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Joshi S, Kumari S, Sarmah A, Pant DD, Sakhuja R. Detection of Hg2+ ions in aqueous medium using an indole-based fluorescent probe: Experimental and theoretical investigations. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.10.081] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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18
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Yadav VB, Rai P, Sagir H, Kumar A, Siddiqui IR. Catalyst-Free Synthesis for Pyrazole-Fused Isocoumarins in Recyclable and Biodegradable Reaction Medium. ChemistrySelect 2017. [DOI: 10.1002/slct.201700976] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Vijay B. Yadav
- Laboratory of Green Synthesis; Department of Chemistry; University of Allahabad; Allahabad- 211002 India
| | - Pragati Rai
- Laboratory of Green Synthesis; Department of Chemistry; University of Allahabad; Allahabad- 211002 India
| | - Hozeyfa Sagir
- Laboratory of Green Synthesis; Department of Chemistry; University of Allahabad; Allahabad- 211002 India
| | - Akhilesh Kumar
- Laboratory of Green Synthesis; Department of Chemistry; University of Allahabad; Allahabad- 211002 India
| | - Ibadur R. Siddiqui
- Laboratory of Green Synthesis; Department of Chemistry; University of Allahabad; Allahabad- 211002 India
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19
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Bishnoi S, Milton MD. Selective and sensitive novel benzimidazolium-based fluorescent probes for micromolar detection of Fe3+ ions in pure aqueous media. J Photochem Photobiol A Chem 2017. [DOI: 10.1016/j.jphotochem.2016.11.010] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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20
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Chen X, Liu Y. Copper-catalyzed one-pot reactions of acetyl chloride, o-halobenzoic acids and Wittig reagents toward 3-methyl isocoumarin synthesis. RSC Adv 2017. [DOI: 10.1039/c7ra06707k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The synthesis of 3-methtyl isocoumarins is achieved via the copper-catalyzed one-pot reactions of Wittig reagents, acetyl chloride and o-iodobenzoic acids via tandem construction of CC, C–O and C–C bonds.
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Affiliation(s)
- Xuwen Chen
- College of Chemistry and Chemical Engineering
- Jiangxi Normal University
- Nanchang 330022
- P. R. China
| | - Yunyun Liu
- College of Chemistry and Chemical Engineering
- Jiangxi Normal University
- Nanchang 330022
- P. R. China
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21
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A new and efficient synthesis of pyrazole-fused isocoumarins on the solid surface of magnetically separable Fe 3 O 4 @SiO 2 -SO 3 H nanoparticles. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.04.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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22
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Zhang Q, Wei H, Zhai R, Ji Z, Qi Y, Zhao X. 5-(N-Ethylcarbazol-3-yl)thiophene-2-carbaldehyde (ECTC): a novel fluorescent sensor for ferric ion. HETEROCYCL COMMUN 2016. [DOI: 10.1515/hc-2016-0130] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract5-(
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23
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Jiang YH, Yan CG. Indium chloride catalyzed three-component reaction for the synthesis of 2-((oxoindolin-3-yl)-4,5,6,7-tetrahydro-1H-indol-1-yl)benzamides. RSC Adv 2016. [DOI: 10.1039/c6ra08811b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In the presence of indium chloride as a Lewis acid catalyst, the three-component reaction afforded functionalized 2-((oxoindolin-3-yl)-4,5,6,7-tetrahydro-1H-indol-1-yl)benzamides in satisfactory yields.
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Affiliation(s)
- Yan-Hong Jiang
- College of Chemistry & Chemical Engineering
- Yangzhou University
- Yangzhou 225002
- China
| | - Chao-Guo Yan
- College of Chemistry & Chemical Engineering
- Yangzhou University
- Yangzhou 225002
- China
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24
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Kundu A, Mukherjee S, Pramanik A. Synthesis of a new class of pyrazole embedded spirocyclic scaffolds using magnetically separable Fe3O4@SiO2–SO3H nanoparticles as recyclable solid acid support. RSC Adv 2015. [DOI: 10.1039/c5ra23599e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A green methodology for the synthesis of a new class of pyrazole embedded spirocyclic scaffolds has been developed using Fe3O4@SiO2–SO3H magnetic nanoparticles.
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Affiliation(s)
- Ashis Kundu
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
| | - Sayan Mukherjee
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
| | - Animesh Pramanik
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
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25
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Maity S, Kundu A, Pramanik A. Synthesis of biologically important, fluorescence active 5-hydroxy benzo[g]indoles through four-component domino condensations and their fluorescence “Turn-off” sensing of Fe(iii) ions. RSC Adv 2015. [DOI: 10.1039/c5ra05780a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The efficiently synthesized fluorescence active 5-hydroxy benzo[g]indoles show excellent fluorescence "Turn-off" sensing of Fe3+ ions.
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Affiliation(s)
- Subhendu Maity
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
| | - Ashis Kundu
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
| | - Animesh Pramanik
- Department of Chemistry
- University of Calcutta
- Kolkata-700 009
- India
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26
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Venkatesan P, Wu SP. A turn-on fluorescent pyrene-based chemosensor for Cu(ii) with live cell application. RSC Adv 2015. [DOI: 10.1039/c5ra05440k] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A pyrene-based fluorescent sensor (PHP) was synthesized for Cu(ii) detection.
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Affiliation(s)
| | - Shu-Pao Wu
- Department of Applied Chemistry
- National Chiao Tung University
- Hsinchu 300
- Taiwan
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