Ultrasensitive detection of 5-hydroxymethylcytosine in genomic DNA using a graphene-based sensor modified with biotin and gold nanoparticles

Ten-eleven translocation (TET) proteins orchestrate deoxyribonucleic acid (DNA) methylation-demethylation dynamics by oxidizing 5-methylcytosine to 5-hydroxymethylcytosine (5hmC) and are frequently inactivated in various cancers. Due to the significance of 5hmC as an epigenetic biomarker for cancer diagnosis, pathogenesis, and treatment, its rapid and precise quantification is essential. Here, we report a highly sensitive electrochemical method for quantifying genomic 5hmC using graphene sheets that were electrochemically exfoliated and functionalized with biotin and gold nanoparticles (Bt-AuNPs) through a single-step electrical method. The attachment of Bt-AuNPs to graphene enhances the specificity of 5hmC-containing DNA and augments the oxidation of 5hmC to 5-formylcytosine in DNA. When coupled to a gold electrode, the Bt-AuNP-graphene-based sensor exhibits exceptional sensitivity and specificity for detecting 5hmC, with a detection limit of 63.2 fM. Furthermore, our sensor exhibits a remarkable capacity to measure 5hmC levels across a range of biological samples, including preclinical mouse tissues with varying 5hmC levels due to either TET gene disruption or oncogenic transformation, as well as human prostate cancer cell lines. Therefore, our sensing strategy has substantial potential for cancer diagnostics and prognosis.

Electrochemical intercalation of anions into graphite: Fundamental aspects, material synthesis, and application to the cathode of dual-ion batteries

In this review, fundamental aspects of the electrochemical intercalation of anions into graphite have been first summarized, and then described the electrochemical preparation of covalent-type GICs and application of graphite as the cathode of dual-ion battery. Electrochemical overoxidation of anion GICs provides graphite oxide and covalent-fluorine GICs, which are key functional materials for various applications including energy storage devices. The reaction conditions to obtain fully oxidized graphite has been mentioned. Concerning the application of graphite for the cathode of dual-ion battery, it stably delivers about 110 mA h g-1 of reversible capacity in usual organic electrolyte solutions. The combination of anion and solvent as well as the concentration of the anions in the electrolyte solutions greatly affect the performance of graphite cathode such as oxidation potential, rate capability, cycling properties, etc. The interfacial phenomenon is also important, and fundamental studies of charge transfer resistance, anion diffusion coefficient, and surface film formation behavior have also been summarized. The use of smaller anions, such as AlCl4 -, Br- can increase the capacity of graphite cathode. Several efforts on the structural modification of graphite and development of electrolyte solutions in which graphite cathode delivers higher capacity were also described.

Edge and Basal Plane Anisotropy of a Preanodized Pencil Graphite Electrode Surface Revealed Using Scanning Electrochemical Microscopy and Electrocatalytic Dopamine Oxidation as a Molecular Probe

Pencil graphite (PGE), an ultralow-cost and ready-to-use disposable-type electrode, has been used for various electrochemical and electroanalytical applications after its surface anodization (PGE*, * means preanodized surface). Indeed, systematic studies on mechanistic and surface features of PGE* have not yet been explored. Herein, we report anodized pencil graphite as a model system to study molecular level insights into the surface using a scanning electrochemical microscopy (SECM) technique and dopamine (DA) electrocatalytic oxidation reaction as a molecular probe. The as-prepared PGE* showed an appreciable electronic conductivity similar to the edge-plane graphitic sites (EPPG) of the highly pyrolytic graphitic electrode (HOPG) but without any surface deterioration that occurs with HOPG due to the instability of the EPPG. Physicochemical characterizations by FESEM, FTIR, Raman, and XPS techniques revealed a flake-like exfoliated PGE* surface with higher contents of carbon-oxygen especially phenolic/alcoholic functional groups than the PGE surface. Based on the chronocoulometric experiment, the number of functional groups formed on the PGE* was calculated as 10.9 × 10-10 mol cm-2. An independent SECM technique using ferricyanide as a redox probe showed the existence of a heterogeneous surface and exhibited an improved electron transfer activity due to the flake-like graphitic island on the PGE* surface. Investigated DA electrochemical oxidation on PGE* yielded about three times enhancement in the peak current signal and about 200 mV reduction in the oxidation potential over the PGE without any serious surface fouling feature that is related to the intermediate polydopamine formation on the basal-plane graphitic surface of the underlying electrode. As an independent electroanalytical study, a prototype electrochemical sensor using PGE* as a working electrode for instant detection of DA-containing pharmaceutical samples in a 1 mL Eppendorf vial has been demonstrated.

Surface-Activated Pencil Graphite Electrode for Dopamine Sensor Applications: A Critical Review

Pencil graphite electrode (PGE) is an alternative, commercially available, ready-to-use, screen-printed electrode for a wide range of electroanalytical applications. Due to the complex-matrix composition and unpredictable electro-inactive nature of PGE in its native form, a surface pre-treatment/activation procedure is highly preferred for using it as an electroactive working electrode for electroanalytical applications. In this article, we review various surface pre-treatment and modification procedures adopted in the literature with respect to the sensitive and selective detection of dopamine as a model system. Specific generation of the carbon-oxygen functional group, along with partial surface exfoliation of PGE, has been referred to as a key step for the activation. Based on the Scopus^® index, the literature collection was searched with the keywords "pencil and dopamine". The obtained data were segregated into three main headings as: (i) electrochemically pre-treated PGE; (ii) polymer-modified PGEs; and (iii) metal and metal nanocomposite-modified PGE. This critical review covers various surface activation procedures adopted for the activation for PGE suitable for dopamine electroanalytical application.

Optimization of uric acid detection with Au nanorod-decorated graphene oxide (GO/AuNR) using response surface methodology

A modified glassy carbon electrode (GCE) was developed based on a synthesized graphene oxide (GO) gold nanorod (AuNR) decorated composite (GO/AuNR) for sensitive electrochemical sensing of uric acid (UA). The electrochemical performance of GO/AuNR/GCE for UA detection was investigated employing the differential pulse voltammetry (DPV) technique. Central composite design (CCD) was applied to obtain the optimum composition of the GO and AuNR composite, which provide the highest possible UA oxidation peak current. The optimum composition was obtained at a GO concentration of 5 mg mL-1 and AuNR volume of 10 mL. Under the optimum conditions, GO/AuNR/GCE showed acceptable analytical performance for UA detection with good linearity (concentration range of 10-90 μM) and both a low detection limit (0.4 μM) and quantitation limit (1.0 μM). Furthermore, the proposed sensor exhibits superior stability, reproducibility, and selectivity using ascorbic acid (AA), dopamine (DA), urea, glucose, and magnesium as interferents. Finally, practical use of GO/AuNR/GCE was demonstrated by successfully determining the content of UA in human urine samples with the standard addition approach.

Systematic study of physicochemical and electrochemical properties of carbon nanomaterials

Carbon nanomaterials exhibit exceptional properties and broad horizon applications, where graphene is one of the most popular allotropes of this family due to its astounding performance in every stratum vis-à-vis other classical materials. The large surface area of 2630 m² g⁻¹, high electrical conductivity, and electron mobility of non-toxic graphene nanomaterials serve as the building blocks for supercapacitor studies. In this article, comparative studies are carried out between electrochemically exfoliated graphene sheets (GSs), solvothermally synthesized graphene quantum dots (GQDs) and acid refluxed carbon nanotubes (CNTs) as an energy storage electrode nanomaterial through cyclic voltammetry (CV). The electrochemical properties of the materials are well correlated with the physicochemical characteristics obtained from Raman, Fourier-transform infrared, and absorption spectroscopy. Thin GSs (0.8–1 nm) and small size (6–10 nm) GQDs fabricated by using laboratory-grade 99% purity graphite rods resulted in promising low-cost materials at mass scale as compared to conducting CNTs. The 0D graphene quantum dots proved to be an excellent energy electrode material in an alkaline electrolyte solution compared to other carbon nanomaterials. The distinct characteristic features of GQDs, like superior electrical properties, large surface area, and abundant active sites make them an ideal candidate for utilization in supercapacitors. The GQDs exhibited an enhanced specific capacitance of 113 F g⁻¹ in 6 mol L⁻¹ KOH through cyclic voltammetry.

Carbon nanomaterials exhibit exceptional properties and broad horizon applications, where graphene is one of the most popular allotropes of this family due to its astounding performance in every stratum vis-à-vis other classical materials.

Avenue to Large-Scale Production of Graphene Quantum Dots from High-Purity Graphene Sheets Using Laboratory-Grade Graphite Electrodes

Graphene has unprecedented physical, chemical, and electronic properties, but need of the hour is to develop low-dimensional nanomaterials, such as graphene quantum dots (GQDs), that could be incorporated into nanoscale devices. This article depicts the production of GQDs from ultrafine, thin (0.8-1 nm), bilayer graphene sheets (GSs) possessing large micron-sized lateral dimension, low defect density (I D/I G: 0.1), and oxidation degree (C/O ratio: 27) of lowest level, in contrast to many other techniques where synthesis of GSs was done using analytical-grade expensive graphite electrodes. This low-cost manufacturing of GSs for industrial-scale applications was achieved by utilizing only 99%-purity graphite electrodes. The variants of such graphite electrodes (graphite rod, film, pencil) are etched in different pH electrolytes (H2SO4, NaCl, NaOH) via prompt electrochemical exfoliation, each giving more than 50% yield. Nowadays, semiconductor quantum dots (QDs) are utilized in smart device production industries, but their toxicity is a major issue of concern. Therefore, the dimension of this two-dimensional (2D) material is reduced to <10 nm to generate GQDs. A facile and highly reproducible approach has been reported for the large-scale generation of GQDs (size ca. 6-10 nm) with minimal surface defects. The protocol followed in this article to synthesize GQDs involves the use of ethylenediamine (en), which passivates the surface and reduces defects, thereby enhancing the optical properties. We demonstrate the correlation of the electrochemical and hydrothermal parameters with the growth mechanism and morphological, structural, chemical, and optical properties of the graphene nanomaterials. Raman spectroscopy and X-ray diffraction (XRD) reveal the structural configurations of GSs and GQDs to investigate the nature of defects. Field emission scanning electron microscopy (FESEM) confirms the morphological characteristics of the as-prepared GSs and GQDs with energy-dispersive X-ray (EDX) analysis determining the C/O ratio. The optical properties like UV-visible absorption and fluorescence assays show the quantum confinement effect phenomenon in GQDs. The obtained GSs and GQDs display enhanced solution stability in DI water and other solvents due to controllable oxidation degree as elucidated through Fourier transform infrared (FTIR) analysis.

Disposable Nonenzymatic Uric Acid and Creatinine Sensors Using μPAD Coupled with Screen-Printed Reduced Graphene Oxide-Gold Nanocomposites

Uric acid (UA) and creatinine are the imperative biological substance for clinical monitoring and diagnosis. Measuring the ratio between uric acid and creatinine in urine helps differentiate acute uric acid nephropathy from the hyperuricemia that secondarily occurs to renal failure. In general, the ratio is greater than 0.9 in acute uric acid nephropathy and less than 0.7 in hyperuricemia. In this work, disposable nonenzymatic screen-printed reduced graphene oxide-gold nanocomposites electrodes were firstly developed for the quantitative analysis of uric acid. Our sensors were also coupled with the paper-based colorimetric sensor of the determination of creatinine. Hence, an alternative high-throughput screening test for the uric acid to creatinine ratio with high sensitivity, specificity, simplicity, and rapidity was developed. Under the optimum conditions, our disposable nonenzymatic screen-printed electrode for the determination of uric acid shows the acceptable analytical performance in a wide range of linearity (2.5-1,000 μM) with a low detection limit of 0.74 μM. Our electrodes also showed no interference from common physiologic compound in urine. The determination of creatinine has been developed using Jaffé reaction between the creatinine and picric acid in alkaline condition. The alkaline picrate color on μPAD changed from yellow to orange in the presence of creatinine and the orange intensity is directly proportional to the creatinine amount in a linearity range of 0.20-6.0 mM as a detection limit of 180 μM. Finally, our device has been utilized to determine uric acid and creatinine simultaneously in control urine samples with acceptable result.

Physicochemical exfoliation of graphene sheets using graphitic carbon nitride

The development of methods for the synthesis of graphene on a large scale at an affordable cost using less toxic materials has attracted significant interest in recent years.

Determination of uric acid in biological samples by high performance liquid chromatography-electrospray ionization-tandem mass spectrometry and study on pathogenesis of pulmonary arterial hypertension in pulmonary artery endothelium cells

Pulmonary arterial hypertension (PAH) is a severe cardiovascular disease that can lead to vascular remodelling and hypertension. Clinical diagnosis of PAH is very difficult. Uric acid (UA) can act as a biological marker for screening of PAH in patients. Multiple studies have indicated that reactive oxygen species (ROS) play an important role in the development of PAH. Thus, it is important to study the relationship between UA and ROS based on the pathogenesis of PAH. For monitoring PAH, a high performance liquid chromatography-electrospray ionization-tandem mass spectrometry (HPLC-ESI-MS/MS) method was developed to measure the concentration of UA from rat models and pulmonary arterial endothelial cells (PAECs) models, which were induced by monocrotaline (MCT) and hypoxia, respectively. In addition, the treatment groups were treated by N-acetyl-l-cysteine (NAC), a ROS scavenger. With the confirmation from hematoxylin-eosin (H&E) staining, the HPLC-ESI-MS/MS method was adopted to successfully analyze the concentration of UA. In this study, for the first time, thymine was used as an internal standard (I.S.) of uric acid. The results showed that the UA concentration in the PAH groups was higher than that in the normal groups, while the UA concentration in the treatment groups decreased compared to that in the PAH group (p < 0.05). It was experimentally proven that the HPLC-ESI-MS/MS method is a rapid, efficient and reliable quantitative method to detect PAH. Furthermore, our results indicated that UA and ROS have a double-regulator role.

De-bundled single-walled carbon nanotube-modified sensors for simultaneous differential pulse voltammetric determination of ascorbic acid, dopamine, and uric acid

De-bundled SWCNTs modified glassy carbon electrode for the simultaneous differential pulse voltammetric determination of ascorbic acid, dopamine, and uric acid.

CVD graphene as an electrochemical sensing platform for simultaneous detection of biomolecules

The development of electrochemical biosensors for the simultaneous detection of ascorbic acid (AA), dopamine (DA), uric acid (UA), tryptophan (Trp), and nitrite ([Formula: see text]) in human serum is reported in this work. Free-standing graphene nanosheets were fabricated on Ta wire using the chemical vapor deposition (CVD) method. CVD graphene, which here served as a sensing platform, provided a highly sensitive and selective option, with detection limits of AA, DA, UA, Trp, and [Formula: see text] of 1.58, 0.06, 0.09, 0.10, and 6.45 μM (S/N = 3), respectively. The high selectivity of the electrode is here explained by a relationship between the bandgap energy of analyte and the Fermi level of graphene. The high sensitivity in the oxidation current was determined by analyzing the influence of the high surface area and chemical structure of free-standing graphene nanosheets on analyte adsorption capacity. This finding strongly indicates that the CVD graphene electrode can be used as a biosensor to detect five analytes in human serum.

Microwave reduction of graphene oxide rationalized by reactive molecular dynamics

Obtaining graphene (GRA) in industrial quantities is among the most urgent goals in today's nanotechnology. Elegant methods involve the oxidation of graphite with its subsequent solvent-assisted exfoliation. The reduction of graphene oxide (GO) is challenging leading to a highly-disordered oxygen-rich material. A particularly successful microwave-induced reduction of GO was reported recently (Science, 2016, 353, 1413-1416). We mimic the experiment by reactive molecular dynamics and establish the molecular mechanisms of reduction and their time scales as functions of temperature. We show that the rapid removal of oxygen groups achieved by microwave heating leaves GRA sheets intact. The epoxy groups are most stable within GO. They can rearrange into the carbonyl groups upon quick heating. It is important to avoid creating holes upon graphite oxidation. They cannot be healed easily and undermine GRA thermal stability and electronic properties. The edge oxygen groups cannot be removed by irradiation, but their effect is marginal on the properties of μm GRA sheets. We demonstrate that different oxygen groups are removed from GO at drastically different temperatures. Therefore, it is possible to obtain separate fractions, e.g. carbonyl-, hydroxyl- and carboxyl-free partially reduced GO. Our results guide the improvement of the GO reduction methods and can be tested directly by experiment.

Novel UIO-66-NO2@XC-72 nanohybrid as an electrode material for simultaneous detection of ascorbic acid, dopamine and uric acid

The UIO-66-NO₂@XC-72 sensor exhibited excellent linear responses to AA, DA and UA due to the synergistic effect of UIO-66-NO₂ and XC-72, as well as the hydrogen bond effect. The detection ranges were 0.2–3.5 μM for AA, 0.03–2.0 μM for DA and 0.75–22 μM for UA.

New-Generation Graphene from Electrochemical Approaches: Production and Applications

Extensive research suggests a bright future for the graphene market. However, for a long time there has been a huge gap between laboratory-scale research and commercial application due to the challenging task of reproducible bulk production of high-quality graphene at low cost. Electrochemical exfoliation of graphite has emerged as a promising wet chemical method with advantages such as upscalability, solution processability and eco-friendliness. Recent progress in the electrochemical exfoliation of graphite and prospects for the application of exfoliated graphene, mainly in the fields of composites, electronics, energy storage and conversion are discussed.

Functional holey graphene oxide: a new electrochemically transformed substrate material for dopamine sensing

Increasing active sites through generating holes within the basal plane of graphene sheets is an effective strategy to enhance catalytic performance in various applications such as sensors, electrocatalysis, and electronics.