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Yoshinaga M, Toldo JM, Rocha WR, Barbatti M. Photoisomerization pathways of trans-resveratrol. Phys Chem Chem Phys 2024. [PMID: 39254634 PMCID: PMC11385707 DOI: 10.1039/d4cp02373k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
Abstract
Resveratrol is well-known for promoting health benefits due to its antioxidant, anti-aging, anti-carcinogenic, and other beneficial activities. Understanding the photophysics of resveratrol is essential for determining its applicability to pharmaceutical innovations. In the present work, we used an explore-then-assess strategy to map the internal conversion pathways of trans-resveratrol. This strategy consists of exploring the multidimensional configurational space with nonadiabatic dynamics simulations based on a semiempirical multireference method, followed by a feasibility assessment of reduced-dimensionality pathways at a high ab initio theoretical level. The exploration step revealed that internal conversion to the ground state may occur near five distinct conical intersections. The assessment step showed that the main photoisomerization pathway involves a twisted-pyramidalized S1/S0 conical intersection, yielding either trans or cis isomers. However, a secondary path was identified, where cis-trans isomerization happens in the excited state and internal conversion occurs at a cyclic conical intersection, yielding a closed-ring resveratrol derivative. This derivative, which can be formed through this direct path or an indirect photoexcitation, may be connected to the production of oxygen-reactive species previously reported and have implications in photodynamic therapy.
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Affiliation(s)
- Mariana Yoshinaga
- Laboratório de Estudos Computacionais em Sistemas Moleculares, eCsMo, Departamento de Química, ICEx, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
| | | | - Willian R Rocha
- Laboratório de Estudos Computacionais em Sistemas Moleculares, eCsMo, Departamento de Química, ICEx, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
| | - Mario Barbatti
- Aix Marseille University, CNRS, ICR, Marseille, France.
- Institut Universitaire de France, 75231 Paris, France
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Chen J, Zhao J, Dong H. Computational explorations about the solvent-polarity-associated excited state proton transfer behaviors for the novel F-BSD compound. J Mol Model 2024; 30:225. [PMID: 38913204 DOI: 10.1007/s00894-024-06029-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 06/15/2024] [Indexed: 06/25/2024]
Abstract
CONTEXT Inspired by the excellent potential application prospects from the precisely controlled attributes displayed by fluorine-substituted-bis(salicylidene)-1,5-diaminonaphthalene (F-BSD) and its derivatives in the domains of photochemistry and photophysics, our present undertaking predominantly focuses on exploring the complexities of photo-induced excited state reactions for F-BSD fluorophores dissolved in solvents with diverse levels of polarity. Our simulations reveal that the excited state intramolecular double proton transfer (ESIDPT) reaction for F-BSD chemosensor can be significantly regulated by solvent polarity-dependent hydrogen bonding interactions and charge recombination induced by photoexcitation, which result from variations in geometries and vertical excitation charge reorganizations. By constructing potential energy surfaces (PESs), we also demonstrate that the stepwise ESIDPT reaction of F-BSD occurs with alternative dual intramolecular hydrogen bonds (O1-H2···N3 or O4-H5···N6). Interestingly, we affirm polar solvents should be conducive to the first-step of ESIDPT process, while nonpolar solvents are in favor of the second step. We sincerely hope solvent polarity-dependent ESIDPT behavior will pave the way for future design of novel luminescent materials. METHODS The molecular geometries were optimized by DFT//TDDFT D3-B3LYP/TZVP theoretical level with IEFPCM solvent model in S0 and S1 states, respectively. This work also explores the energy level of target molecules with the computational vertical absorption spectra by TDDFT. All the simulations were carried out based on Gaussian 16 software. The core-valence bifurcation (CVB) indexes were obtained by using Multiwfn 3.8. Potential energy surfaces were constructed by the DFT//TDDFT D3-B3LYP/TZVP level based on restricted optimization, also the transition state (TS) forms were searched using the same level.
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Affiliation(s)
- Jiahe Chen
- College of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China
| | - Jinfeng Zhao
- College of Physical Science and Technology, Shenyang Normal University, Shenyang, 110034, China.
- International Cooperative Joint Laboratory of Condensed Matter Physics, Shenyang Normal University, Shenyang, 110034, China.
| | - Hao Dong
- Hebei Key Laboratory of Physics and Energy Technology, Department of Mathematics and Physics, North China Electric Power University, Baoding, 071000, China
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Baweja S, Kalal B, Maity S. Spectroscopic Characterization of Hydrogen-Bonded 2,7-Diazaindole Water Complex Isolated in the Gas Phase. J Phys Chem A 2024; 128:3329-3338. [PMID: 38652167 DOI: 10.1021/acs.jpca.4c01113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
We present a systematic experimental analysis of the 1:1 complex of 2,7-diazaindole (27DAI) with water in the gas phase. The complex was characterized by using two-color-resonant two-photon ionization (R2PI), laser-induced fluorescence (LIF), single vibronic level fluorescence (SVLF), and photoionization efficiency (PIE) spectroscopic methods. The 000 band of the S1←S0 electronic transition of the 27DAI-H2O complex was observed at 33,074 cm-1, largely red-shifted by 836 cm-1 compared to that of the bare 27DAI. From the R2PI spectrum, the detected modes at 141 (ν'Tx), 169 (ν'Ty), and 194 (ν'Ry) cm-1 were identified as the internal motions of the H2O molecule in the complex. However, these modes were detected at 115 (ν″Tx), 152 (ν″Ty), and 190 (ν″Ry) cm-1 in the ground state, which suggested a stronger hydrogen bonding interaction in the photo-excited state. The structural determination was aided by the detection of νNH and νOH values in the ground and excited state complexes using the FDIR and IDIR spectroscopies. The detection of νNH at 3414 and νOH at 3447 cm-1 in 27DAI-H2O has shown an excellent correlation with the most stable structure consisting of N(1)-H···O and OH···N(7) hydrogen-bonded bridging water molecule in the ground state. The structure of the complex in the electronic excited state (S1) was confirmed by the corresponding bands at 3210 (νNH) and 3265 cm-1 (νOH). The IR-UV hole-burning spectroscopy confirmed the presence of only one isomer in the molecular beam. The ionization energy (IE) of the 27DAI-H2O complex was obtained as 8.789 ± 0.002 eV, which was significantly higher than the 7AI-H2O complex. The higher IE values of N-rich molecules suggest a higher resistivity of such molecules against photodamage. The obtained structure of the 27DAI-H2O complex has explicitly shown the formation of a cyclic one-solvent bridge incorporating N(1)-H···O and O-H···N(7) hydrogen bonds upon microsolvation. The lower excitation and higher ionization energies of the 27DAI-H2O complex compared to 7AI-H2O established higher stabilization of N-rich molecules. The solvent clusters forming a linear bridge between the hydrogen/proton acceptor and donor sites in the complex can be considered as a stepping stone to investigate the photoinduced deactivation mechanisms in nitrogen containing biologically relevant molecules.
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Affiliation(s)
- Simran Baweja
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana 502284, India
| | - Bhavika Kalal
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana 502284, India
| | - Surajit Maity
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana 502284, India
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4
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Liu C, Zhao J, Chen J, Wang M, Hou M, Yang L. Regulated stepwise ESDPT mechanism associated with chalcogen substitutions in BDIBD derivatives. Phys Chem Chem Phys 2024; 26:6335-6344. [PMID: 38314844 DOI: 10.1039/d3cp05837a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Inspired by the brilliant photochemical and photophysical properties of organic molecules containing chalcogenide substitutions that could be potentially applied across various disciplines, in this work, the effects of the atomic electronegativity of chalcogens (O, S, and Se) on hydrogen bond interactions and excited state proton transfer (ESPT) are mainly focused. We present characteristic oxygen-hydroxybenzazole-substituted 2,5-bis(4,5-diphenyl-1H-imidazol-2-yl)benzene-1,4-diol (BDIBD) derivatives that contain intramolecular double hydrogen bonds. The main objective of this study was to explore in detail the influence of the change of chalcogen atomic electronegativity on dual hydrogen bond interaction and ESPT behavior. By comparing the structural changes and infrared (IR) vibrational spectra of BDIBD derivative (BDIBD-O, BDIBD-S and BDIBD-Se) fluorophores in S0 and S1 states, combined with the preliminary detection of hydrogen bond interaction via the core-valence bifurcation (CVB) index and predicted hydrogen bonding energy (EHB), we conclude that dual hydrogen bonds should be strengthened in the S1 state, which is favorable for the occurrence of ESPT reactions. The charge recombination behavior of hydrogen bonds, induced by photoexcitation, further illustrates this point. By constructing potential energy surfaces (PESs) based on restrictive optimization and by searching the transition state (TS) structure, we finally elucidate stepwise excited-state double proton transfer (ESDPT). Specifically, we confirm that a change in atomic electronegativity has a regulatory effect on the ESDPT behavior in BDIBD derivatives, that is, lower atomic electronegativity is more conducive to stepwise ESDPT.
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Affiliation(s)
- Chang Liu
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
| | - Jinfeng Zhao
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
| | - Jiahe Chen
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
| | - Mingwei Wang
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
| | - Mengmeng Hou
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
| | - Liang Yang
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China.
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Lamas I, Montero R, Martínez-Martínez V, Longarte A. Photodynamics of azaindoles in polar media: the influence of the environment. Phys Chem Chem Phys 2024; 26:3240-3252. [PMID: 38193884 DOI: 10.1039/d3cp03412g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
We have studied the relaxation dynamics of a family of azaindole (AI) structural isomers, 4-, 5-, 6- and 7-AI, by steady-state and time-resolved methods (fs-transient absorption and fluorescence up-conversion), in solvents of different polarity. The measurements in aprotic solvents show distinctive fluorescence yields and excited state lifetimes among the isomers, which are tuned by the polarity of the medium. Guided by simple TD-DFT calculations and based on the behavior observed in the isolated species, it has been possible to address the influence of the environment polarity on the relaxation route. According to the obtained picture, the energy of the nπ* state, which is strongly dependent on the position of the pyridinic nitrogen, controls the rate of the internal conversion channel that accounts for the distinctive photophysical behavior of the isomers. On the other hand, preliminary measurements in protic media (methanol) show a very different photodynamical behavior, in which the anomalous measured fluorescent patterns are very likely the result of reactive channels (proton transfer) triggered by the electronic excitation.
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Affiliation(s)
- Iker Lamas
- Departamento de Química-Física Facultad de Ciencia y Tecnología. Universidad del País Vasco (UPV/EHU) Apart. 644, 48080 Bilbao, Spain.
| | - Raúl Montero
- SGIKER Laser Facility Facultad de Ciencia y Tecnología. Universidad del País Vasco (UPV/EHU) 48940, Leioa, Spain.
| | - Virginia Martínez-Martínez
- Departamento de Química-Física Facultad de Ciencia y Tecnología. Universidad del País Vasco (UPV/EHU) Apart. 644, 48080 Bilbao, Spain.
| | - Asier Longarte
- Departamento de Química-Física Facultad de Ciencia y Tecnología. Universidad del País Vasco (UPV/EHU) Apart. 644, 48080 Bilbao, Spain.
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Baweja S, Kalal B, Maity S. Laser spectroscopic characterization of supersonic jet cooled 2,7-diazaindole. Phys Chem Chem Phys 2023; 25:26679-26691. [PMID: 37772686 DOI: 10.1039/d3cp03010e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
We report the first gas phase comprehensive study of the electronic spectroscopy of 2,7-diazaindole molecule in the ground and excited states. Single vibronic level fluorescence spectroscopy (SVLF) was performed to determine the ground state vibrations of the molecule, which depicted a large Franck-Condon activity beyond 2600 cm-1. For the excited state characterization, laser-induced fluorescence (LIF) and two-color resonant two-photon ionization spectroscopy (2C-R2PI) were performed. The band origin (000) for S1 ← S0 transition appeared at 33910 ± 1 cm-1 which was red shifted by 718 cm-1 and 1322 cm-1 compared to that of 7-azaindole and indole respectively. The Franck-Condon active vibrational modes in the spectra were seen till the (000) + 1600 cm-1 region. The IR-UV hole burning spectroscopy confirmed the absence of any other isomeric species in the molecular beam. The ionization energy (IE) of the molecule was measured as 8.921 ± 0.001 eV, recorded using photoionization efficiency spectroscopy. The above IE value was significantly higher than that of the related indole derivatives, suggesting the higher photostability of the 27DAI molecule due to N(2) insertion. The ground and excited state N-H stretching frequencies of the molecule were determined using fluorescence-dip infrared spectroscopy (FDIR) and resonant ion-dip infrared spectroscopy (IDIR), and the values are 3523 and 3467 cm-1, respectively. The lower value of νNH in the electronic excited state implied the increased photoacidity of the group. A comparative analysis of the experimental LIF/2C-R2PI spectra was done against Franck-Condon simulated spectra at three different levels of theory. The vibrational frequencies calculated at B3LYP-D4/def2-TZVPP showed the most accurate prediction in comparison with the experimentally detected symmetric modes in the ground state. However, in the excited state, the lower energy asymmetric modes simulated at the B3LYP/def-SVP level of theory provided the best agreement with the experiment. This is most probably due to the distortion observed at the pyrazolyl ring leading to the appearance of asymmetric vibrational modes. The above study highlights the possibility to appropriately tune the excitation wavelengths as well as alter the photostability of the organic chromophores via additional N-insertion in the molecular systems.
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Affiliation(s)
- Simran Baweja
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502284, India.
| | - Bhavika Kalal
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502284, India.
| | - Surajit Maity
- Department of Chemistry, IIT Hyderabad, Kandi, Sangareddy, Telangana, 502284, India.
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7
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Sutton SF, Rotteger CH, Jarman CK, Tarakeshwar P, Sayres SG. Ultrafast Proton Transfer and Contact Ion-Pair Formation in Formic Acid Clusters. J Phys Chem Lett 2023; 14:8306-8311. [PMID: 37681673 DOI: 10.1021/acs.jpclett.3c01654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
Abstract
The ultrafast proton transfer dynamics of homogeneous formic acid clusters (FA)n, n < 10, are investigated with femtosecond time-resolved mass spectrometry. We monitor the proton transfer pathway following Rydberg state electronic relaxation and find that successful ion pair formation increases logarithmically with cluster size. Ab initio calculations demonstrate similar excitation/relaxation behavior for each cluster, revealing a contact ion pair forms between two molecules composing the cluster before finally a formate anion (HCOO-) is dissociated by the probe pulse. The sub-ps time scale for rearrangement and proton transfer increases almost linearly with cluster size, requiring ∼67 fs per additional formic acid molecule and ranging from 213 ± 51 fs for the trimer to 667 ± 116 fs for FA9. The near-linear trends measured for both rearrangement lifetime and ion pair formation suggest that proton transfer is unlikely in the formic acid dimer but becomes prominent in small clusters.
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Affiliation(s)
- Shaun F Sutton
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
- Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287, United States
| | - Chase H Rotteger
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
- Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287, United States
| | - Carter K Jarman
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
- Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287, United States
| | | | - Scott G Sayres
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
- Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287, United States
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8
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Zhao J, Liu C. Computational Insights into Excited State Intramolecular Double Proton Transfer Behavior Associated with Atomic Electronegativity for Bis(2'-benzothiazolyl)hydroquinone. Molecules 2023; 28:5951. [PMID: 37630203 PMCID: PMC10458628 DOI: 10.3390/molecules28165951] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 08/05/2023] [Accepted: 08/07/2023] [Indexed: 08/27/2023] Open
Abstract
Inspired by the distinguished regulated photochemical and photophysical properties of 2-(2'-hydroxyphenyl)benzazole derivatives, in this work, the novel bis(2'-benzothiazolyl)hydroquinone (BBTHQ) fluorophore is explored, looking at its photo-induced behaviors associated with different substituted atomic electronegativities, i.e., BBTHQ-SO, BBTHQ-SS and BBTHQ-Se compounds. From the structural changes, infrared (IR) vibrational variations and simulated core-valence bifurcation (CVB) indexes for the dual hydrogen bonds for the three BBTHQ derivatives, we see that low atomic electronegativity could be conducive to enhancing hydrogen bonding effects in the S1 state. Particularly, the O4-H5⋯N6 of BBTHQ-SO and the O1-H2⋯N3 of BBTHQ-SSe could be strengthened to be more intensive in the S1 state, respectively. Looking into the charge recombination induced by photoexcitation, we confirm a favorable ESDPT trend deriving from the charge reorganization of the dual hydrogen bonding regions. By constructing the potential energy surfaces (PESs) along with the ESDPT paths for the BBTHQ-SO, BBTHQ-SS and BBTHQ-Se compounds, we not only unveil stepwise ESDPT behaviors, but also present an atomic electronegativity-regulated ESDPT mechanism.
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Affiliation(s)
- Jinfeng Zhao
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China;
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9
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Xin X, Shi W, Zhao Y, Zhao G, Li Y. Theoretical insights into the excited-state single and double proton transfer processes of DEASH in water. Chem Phys 2023. [DOI: 10.1016/j.chemphys.2023.111882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
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10
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Romero AH, Cerecetto HE. High CT-Fluorophore Featuring a Basic Moiety into D-A Chain as a p Ka Probe. J Org Chem 2022; 87:7618-7634. [PMID: 35671375 DOI: 10.1021/acs.joc.1c03104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The determination of acidity represents a significant challenge within fluorometry, and no effective strategy has been developed successfully yet. It is attributed to the fact that acidity tends to be enhanced upon excitation, giving, in general, an overestimation of the ionization constant, pKa. Herein, we developed a strategy for pKa estimation of Brønsted acids in solution through fluorometry by using a convenient pKa probe, N1-aryl-7-methoxy-2-(trifluoromethyl)benzo[b][1,8]naphthyridin-4(1H)-one. It allowed us to obtain a linear log KSV versus pKa correlation derived from the selective quenching response of the probe by an interaction with different Brønsted acids. The key points of N1-aryl-7-methoxy-2-(trifluoromethyl)benzo[b][1,8]naphthyridin-4(1H)-one as a pKa probe were (i) the location of a weak basic moiety in the donor-acceptor chain of the fluorophore, which favors a selective quenching of the intramolecular charge-transfer process according to the acidity of acid, and (ii) the high CT character upon excitation that promotes higher quenching magnitudes and favors a wider pKa range (19.5pKa) for the log KSV versus pKa correlation. Other key principles were to delimit the study to pure proton transfer and nonfluorescent acids, which allowed restricting the quenching response to a process dependent mainly on the acid-base equilibrium. All these findings open a new perspective as a proof of concept to design effective fluorescent pKa probes.
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Affiliation(s)
- Angel H Romero
- Grupo de Química Orgánica Medicinal, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
| | - Hugo E Cerecetto
- Grupo de Química Orgánica Medicinal, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay.,Área de Radiofarmacia, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Mataojo 2055, 11400 Montevideo, Uruguay
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11
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Mansour R, Mukherjee S, Pinheiro M, Noble JA, Jouvet C, Barbatti M. Pre-Dewar structure modulates protonated azaindole photodynamics. Phys Chem Chem Phys 2022; 24:12346-12353. [PMID: 35546500 DOI: 10.1039/d2cp01056a] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Recent experimental work revealed that the lifetime of the S3 state of protonated 7-azaindole is about ten times longer than that of protonated 6-azaindole. We simulated the nonradiative decay pathways of these molecules using trajectory surface hopping dynamics after photoexcitation into S3 to elucidate the reason for this difference. Both isomers mainly follow a common ππ* relaxation pathway involving multiple state crossings while coming down from S3 to S1 in the subpicosecond time scale. However, the simulations reveal that the excited-state topographies are such that while the 6-isomer can easily access the region of nonadiabatic transitions, the internal conversion of the 7-isomer is delayed by a pre-Dewar bond formation with a boat conformation.
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Affiliation(s)
- Ritam Mansour
- Aix Marseille University, CNRS, ICR, Marseille, France.
| | | | - Max Pinheiro
- Aix Marseille University, CNRS, ICR, Marseille, France.
| | | | | | - Mario Barbatti
- Aix Marseille University, CNRS, ICR, Marseille, France. .,Institut Universitaire de France, 75231 Paris, France.
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12
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Fu TH, Lin MY, Fu CB, Yu XF, Xiao B, Cheng JB, Li Q. The role of nitro group on the excited-state relaxation mechanism of P-Z base pair. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 267:120549. [PMID: 34810098 DOI: 10.1016/j.saa.2021.120549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 09/09/2021] [Accepted: 10/24/2021] [Indexed: 06/13/2023]
Abstract
DNAs' photostability is significant to the normal function of organisms. P-Z is a hydrogen bonded artificial DNA base pair, where P and Z represent 2-amino-imidazo[1,2-a]-1,3,5-triazin-4(8H)one and 6-amino-5nitro-2(1H)-pyridone, respectively. The excited-state relaxation mechanism of P-Z pair is investigated using static TDDFT calculations combined with the non-adiabatic dynamic simulations at TDDFT level. The roles of nitro rotation, nitro out-of-plane deformation, and single proton transfer (SPT) along hydrogen bond are revealed. The results of potential energy profile calculations demonstrate that the SPT processes along the hydrogen bonds are unfavorable to occur statically, which is in great contrast to the natural base pair. The non-adiabatic dynamic simulations show that the excited-state nitro rotation and nitro out-of-plane deformation are the two important relaxation channels which lead to the fast internal conversion to S0 state. The SPT from Z to P is also observed, followed by distortion on P, inducing the fast internal conversion to S0 state. However, this channel (decay via SPT process) plays minor roles on the excited-state relaxation mechanism statistically. This work shows the great differences of the excited-state relaxation mechanism between the natural base pairs and artificial base pair, also sheds new light into the role of hydrogen bond and nitro group in P-Z base pair.
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Affiliation(s)
- Ting-He Fu
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Man-Yu Lin
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Cheng-Bin Fu
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Xue-Fang Yu
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China.
| | - Bo Xiao
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Jian-Bo Cheng
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China
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Chaihan K, Bui TT, Goubard F, Kungwan N. Tunable keto emission of 2-(2′-hydroxyphenyl)benzothiazole derivatives with π-expansion, substitution and additional proton transfer site for excited-state proton transfer-based fluorescent probes: Theoretical insights. J Photochem Photobiol A Chem 2021. [DOI: 10.1016/j.jphotochem.2021.113450] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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14
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Li C, Hu B, Cao Y, Li Y. Elaborating the excited-state double proton transfer mechanism and multiple fluorescent characteristics of 3,5-bis(2-hydroxypheny)-1H-1,2,4-triazole. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 258:119854. [PMID: 33933943 DOI: 10.1016/j.saa.2021.119854] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 02/28/2021] [Accepted: 04/15/2021] [Indexed: 06/12/2023]
Abstract
Recently, Krishnamoorthy and coworkers reported a new type of proton transfer, which was labeled as 'proton transfer triggered proton transfer', in 3,5-bis(2-hydroxypheny)-1H-1,2,4-triazole (bis-HPTA). In this work, the excited-state double proton transfer (ESDPT) mechanism and multiple fluorescent characteristics of bis-HPTA were investigated. Upon photo-excitation, the intramolecular hydrogen bonding strength changed and the electron density of bis-HPTA redistributed. These changes will affect the proton transfer process. In S0 state, the proton transfer processes of bis-HPTA were prohibited on the stepwise and concerted pathways. After vertical excitation to the S1 state, the ESIPT-II process was more likely to occur than the ESIPT-I process, which was contrary to the conclusion that the ESIPT-II process is blocked and the ESIPT-II process takes place after the ESIPT-I process proposed by Krishnamoorthy and coworkers. When the K2 tautomer was formed through the ESIPT-II process, the second proton transfer process on the stepwise pathway was prohibited. On another stepwise pathway, after the ESIPT-I process (form the K1 tautomer), the second proton transfer process should overcome a higher potential barrier than the ESIPT-I process to form ESDPT tautomer. On the concerted pathway, the bis-HPTA can synchronous transfer double protons to form the ESDPT tautomer. The ESDPT tautomer was unstable and immediately converted to the K2 tautomer via a barrierless reverse proton transfer process. Thus, the fluorescent maximum at 465 nm from the ESDPT tautomer reported by Krishnamoorthy and coworkers was ascribed to the K2 tautomer. Most of the fluorophores show dual fluorescent properties, while the bis-HPTA undergoing ESDPT process exhibited three well-separated fluorescent peaks, corresponding to its normal form (438 nm), K1 tautomer (462 nm) and K2 tautomer (450 nm), respectively.
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Affiliation(s)
- Chaozheng Li
- School of Mechanical and Electrical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, China.
| | - Bo Hu
- School of Mechanical and Electrical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Yonghua Cao
- School of Mechanical and Electrical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Yongfeng Li
- School of Mechanical and Electrical Engineering, Henan Institute of Science and Technology, Xinxiang 453003, China
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15
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Yu XF, Fu TH, Xiao B, Yu HY, Li Q. A theoretical study on the excited-state deactivation paths for the A-5FU dimer. Phys Chem Chem Phys 2021; 23:16089-16106. [PMID: 34291779 DOI: 10.1039/d1cp00030f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The photostability of DNA plays a key role in the normal function of organisms. A-5FU is a base pair derivative of the A-T dimer where the methyl group is replaced by a F atom. Here, accurate static TDDFT calculations and non-adiabatic dynamic simulations are used to systematically investigate the excited-state decay paths of the A-5FU dimer related to the proton transfer and the out-of-plane twisting deformation motion of A and 5FU in the 1ππ* and 1nπ* states. CC2 is used to check the accuracy of the current TDDFT calculations. Our results show that the deformation of the C[double bond, length as m-dash]C or C[double bond, length as m-dash]N double bond in A and 5FU provides an efficient pathway for the depopulation of the lowest excited states, which can compete with the excited-state proton transfer paths in the dimer. This finding indicates that monomer-like decay paths could be important for the photostability of weakly hydrogen-bonded DNA base pairs and provide a new insight into the excited-state decay paths in base pairs and their analogues.
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Affiliation(s)
- Xue-Fang Yu
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China.
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16
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Mawa I, Panda AN. Insights into the Excited-State Processes in 1-Hydroxy-2-acetonaphthone at ADC(2) and CASSCF Levels. J Phys Chem A 2021; 125:3015-3024. [PMID: 33818112 DOI: 10.1021/acs.jpca.1c02349] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
1-Hydroxy-2-acetonaphthone (HAN) has been extensively studied both experimentally and computationally to ascertain the existence of the excited-state proton transfer process. However, the process of full photocycle including the nonradiative relaxation pathways is yet to be proposed. Therefore, in the present study, we aim at providing a comprehensive picture of the excited-state processes in HAN including the proton transfer and relaxation processes through electronic structure calculations at second-order algebraic diagrammatic construction (ADC(2)) and complete active space second-order perturbation theory (CASPT2)//complete active space self-consistent field (CASSCF) and dynamics simulations at ADC(2) levels. Our studies show that the proton transfer process in the S1 state is barrierless and produces a stable keto form, which is in accordance with previous experimental and computational studies. Adiabatic dynamics simulations at the ADC(2) level confirmed the ultrafast process with an average proton transfer time of 43 fs. The resultant keto conformer then undergoes torsional rotation, leading to a conical intersection that mediates the internal conversion process to the ground state. Our dynamics simulation predicted that this deactivation process occurs at a time scale beyond 600 fs of simulation time. We also explored nonradiative relaxation from the enol Franck-Condon region, and this process was found to be improbable from the static point of view at both the ADC(2) and CASPT2 levels of theory due to a high energy barrier along the torsional coordinate.
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Affiliation(s)
- Ibanrishisha Mawa
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, India
| | - Aditya N Panda
- Department of Chemistry, Indian Institute of Technology, Guwahati 781039, India
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17
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Joshi HC, Antonov L. Excited-State Intramolecular Proton Transfer: A Short Introductory Review. Molecules 2021; 26:molecules26051475. [PMID: 33803102 PMCID: PMC7963178 DOI: 10.3390/molecules26051475] [Citation(s) in RCA: 75] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 03/03/2021] [Accepted: 03/04/2021] [Indexed: 12/03/2022] Open
Abstract
In this short review, we attempt to unfold various aspects of excited-state intramolecular proton transfer (ESIPT) from the studies that are available up to date. Since Weller’s discovery of ESIPT in salicylic acid (SA) and its derivative methyl salicylate (MS), numerous studies have emerged on the topic and it has become an attractive field of research because of its manifold applications. Here, we discuss some critical aspects of ESIPT and tautomerization from the mechanistic viewpoint. We address excitation wavelength dependence, anti-Kasha ESIPT, fast and slow ESIPT, reversibility and irreversibility of ESIPT, hydrogen bonding and geometrical factors, excited-state double proton transfer (ESDPT), concerted and stepwise ESDPT.
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Affiliation(s)
- Hem C. Joshi
- Institute for Plasma Research, Bhat, Gandhinagar 382428, India;
| | - Liudmil Antonov
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
- Correspondence:
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18
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Zhao J, Jin B. Unraveling photo-excited behaviors and proton transfer mechanisms for coexisting 5-methoxy-salicylaldhyde azine isomers. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115309] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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19
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Noble JA, Marceca E, Dedonder C, Phasayavan W, Féraud G, Inceesungvorn B, Jouvet C. Influence of the N atom position on the excited state photodynamics of protonated azaindole. Phys Chem Chem Phys 2020; 22:27280-27289. [PMID: 33227118 DOI: 10.1039/d0cp03608k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We present a study of the photofragmentation of three protonated azaindole molecules - 7-azaindole, 6-azaindole, and 5-azaindole - consisting of fused pyrrole-pyridine bicyclic aromatic systems, in which the pyridinic (protonated) nitrogen heteroatom is located at the 7, 6, and 5 positions, respectively. Photofragmentation electronic spectra of the isolated aforementioned azaindolinium cations reveal that their photodynamics extends over timescales covering nine orders of magnitude and provide evidence about the resultant fragmentation pathways. Moreover, we show how the position of the heteroatom in the aromatic skeleton influences the excited state energetics, fragmentation pathways, and fragmentation timescales. Computed ab initio adiabatic transition energies are used to assist the assignation of the spectra, while geometry optimisation in the excited electronic states as well as ab initio calculations along the potential surfaces demonstrate the role of ππ*/πσ* coupling and/or large geometry changes in the dynamics of these species. Evidence supporting the formation of Dewar valence isomers as intermediates involved in sub-picosecond relaxation processes is discussed.
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Affiliation(s)
- Jennifer A Noble
- CNRS, Aix Marseille Univ., PIIM, Physique des Interactions Ioniques et Moléculaires, UMR 7345, 13397, Marseille, France.
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20
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Lamas I, Montero R, Martínez-Martínez V, Longarte A, Blancafort L. An nπ* gated decay mediates excited-state lifetimes of isolated azaindoles. Phys Chem Chem Phys 2020; 22:18639-18645. [PMID: 32789383 DOI: 10.1039/d0cp02635b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Aiming to serve as a guide to understand the relaxation mechanisms of more complex aza-aromatic compounds, such as purine bases, we have studied the non-radiative channels of a set of azaindole structural isomers: 4-, 5-, 6- and 7-azaindole (AI). The relaxation of the isolated molecules, after excitation at the low energy portion of their spectra, has been tracked by femtosecond time-resolved ionization, and the decay paths have been obtained with MS-CASPT2//TD-DFT calculations. Although the ultrashort measured lifetimes for 5- and 6-AI are in contrast to the long-living excited state found in 7-AI, the calculations describe a common relaxation pathway. Along it, the initially excited ππ* states decay to the ground state through a conical intersection accessed through an nπ* state that functions as a gate state. The work reveals that the position of the nitrogen atoms in the purine ring determines the barrier to access the gate state and therefore, the rate of the non-radiative relaxation.
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Affiliation(s)
- Iker Lamas
- Departamento de Química Física, Universidad del País Vasco (UPV/EHU), Apart. 644, 48080 Bilbao, Spain.
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21
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Yi J, Fang H. Effect of water on excited‐state double proton transfer in 7‐azaindole‐H
2
O complex: A theoretical study. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4060] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jiacheng Yi
- Department of Chemistry and Material Science, College of ScienceNanjing Forestry University Nanjing China
| | - Hua Fang
- Department of Chemistry and Material Science, College of ScienceNanjing Forestry University Nanjing China
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22
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Shen S, Liu X, Sun J, Wang M, Jiang Z, Xia G, Wang H. Excited state intramolecular single proton transfer mechanism of pigment yellow 101 in solid state: Experiment and DFT calculation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 217:93-100. [PMID: 30928839 DOI: 10.1016/j.saa.2019.03.076] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Revised: 03/16/2019] [Accepted: 03/22/2019] [Indexed: 06/09/2023]
Abstract
To investigate fluorescence mechanism of Pigment Yellow 101 (P. Y. 101) in solid state, three aromatic aldehyde azines (1-3) including P. Y. 101 have been synthesized and compared with each other. Results indicated that P. Y. 101 prepared by solvothermal method is actually the mixture of two polymorphs, whose molecular packing mode can be transformed into each other by recrystallizing or external stimuli such as pressure and grinding. The ESIPT properties of 1-3 were investigated by DFT/TD-DFT calculations and time-correlated single photon counting (TCSPC) technique. Both experimental and theoretical results revealed that the dual fluorescence properties of P. Y. 101 in solid state are ascribed to the excited-state intramolecular single proton transfer fluorescence emissions of two structurally different polymorphs rather than the results of the sequential or concerted excited-state intramolecular double proton transfers, which provide a potential valuable tool for developing multistimuli-responsive luminescent materials.
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Affiliation(s)
- Shen Shen
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China; School of Materials Science and Engineering, Nanchang University, Jiangxi 330031, China
| | - Xian Liu
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China
| | - Jianqi Sun
- College of Chemistry and Environmental Engineering, Jiujiang University, Jiangxi 332005, China.
| | - Mingda Wang
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China
| | - Zhengjun Jiang
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China
| | - Guomin Xia
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China
| | - Hongming Wang
- Institute for Advanced Study, Nanchang University, Jiangxi 330031, China.
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23
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Xie L, Cheng H, Fang D, Chen ZN, Yang M. Enhanced QM/MM sampling for free energy calculation of chemical reactions: A case study of double proton transfer. J Chem Phys 2019; 150:044111. [PMID: 30709281 DOI: 10.1063/1.5072779] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Free energy calculations for chemical reactions with a steep energy barrier require well defined reaction coordinates (RCs). However, when multiple parallel channels exist along selected RC, the application of conventional enhanced samplings is difficult to generate correct sampling within limited simulation time and thus cannot give correct prediction about the favorable pathways, the relative stability of multiple products or intermediates. Here, we implement the selective integrated tempering sampling (SITS) method with quantum mechanical and molecular mechanical (QM/MM) potential to investigate the chemical reactions in solution. The combined SITS-QM/MM scheme is used to identify possible reaction paths, intermediate and product states, and the free energy profiles for the different reaction paths. Two double proton transfer reactions were studied to validate the implemented method and simulation protocol, from which the independent and correlated proton transfer processes are identified in two representative systems, respectively. This protocol can be generalized to various kinds of chemical reactions for both academic studies and industry applications, such as in exploration and optimization of potential reactions in DNA encoded compound library and halogen or deuterium substitution of the hit discovery and lead optimization stages of drug design via providing a better understanding of the reaction mechanism along the designed chemical reaction pathways.
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Affiliation(s)
- Liangxu Xie
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 21300, China
| | - Huimin Cheng
- XtalPi Inc. (Shenzhen Jingtai Technology Co., Ltd.), Times Science & Tech Mansion E. 20F, 7028 Shennan Ave, Futian District, Shenzhen, China
| | - Dong Fang
- XtalPi Inc. (Shenzhen Jingtai Technology Co., Ltd.), Times Science & Tech Mansion E. 20F, 7028 Shennan Ave, Futian District, Shenzhen, China
| | - Zhe-Ning Chen
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, 155 Yangqiao Road West, Fuzhou 350002, China
| | - Mingjun Yang
- XtalPi Inc. (Shenzhen Jingtai Technology Co., Ltd.), Times Science & Tech Mansion E. 20F, 7028 Shennan Ave, Futian District, Shenzhen, China
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24
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Dsouza R, Cheng X, Li Z, Miller RJD, Kochman MA. Oscillatory Photoelectron Signal of N-Methylmorpholine as a Test Case for the Algebraic-Diagrammatic Construction Method of Second Order. J Phys Chem A 2018; 122:9688-9700. [DOI: 10.1021/acs.jpca.8b10241] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Raison Dsouza
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Xinxin Cheng
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging (CUI), Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Zheng Li
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
| | - R. J. Dwayne Miller
- Max Planck Institute for the Structure and Dynamics of Matter, Bldg. 99 (CFEL), Luruper Chaussee 149, 22761 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging (CUI), Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Department of Chemistry and Physics, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Michał Andrzej Kochman
- Department of Physics, Chemistry and Biology (IFM), Linköping University, 581 83 Linköping, Sweden
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25
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Concerted-asynchronous reaction path of the excited-state double proton transfer in the 7-azaindole homodimer and 6H-indolo[2,3-b]quinoline/7-azaindole heterodimer. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2017.11.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Xu C, Gu FL, Zhu C. An excited-state Wolff rearrangement reaction of 5-diazo Meldrum's acid: an ab initio on-the-fly nonadiabatic dynamics simulation. Phys Chem Chem Phys 2018; 20:22681-22688. [PMID: 30137106 DOI: 10.1039/c8cp04164d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A global switching on-the-fly trajectory surface hopping dynamics simulation at the 3SA-CASSCF(12,11)/6-31G* quantum level has been employed to probe the photo-induced Wolff rearrangement (WR) reaction of 5-diazo Meldrum's acid (DMA) within three low-lying electronic excited states. The present simulation predicted that the branching ratios for relaxing back to the ground state, isomerizing to diazirine, and reaction to ketene I via carbene I are 69% ± 0.1, 3% ± 0.4, and 28% ± 0.1, which are in excellent agreement with those obtained by the femtosecond spectroscopy experiment, 67%, 3% and 30%, respectively. In particular, the present simulation revealed that the major WR reaction to ketene I pathway is stepwise via the excited-state to carbene I (17.8% ± 0.2) and via the ground-state to carbene I (8.7% ± 0.2), and the minor pathway is concerted synchronous (1.5% ± 0.6). The photo-induced WR reaction of DMA has been quantitatively interpreted in terms of the distribution of extended seam surfaces as a function of CN dissociation bonds for two important conical intersections within three low-lying electronic excited states. Ultrafast dynamic time constants have been estimated to be about 500 fs ± 120 fs and 180 fs ± 80 fs for the stepwise and the concerted WR reaction to ketene I which are also in good agreement with those determined by the experiment. Therefore, the photo-induced excited-state WR reaction mechanism has been quantitatively revealed by the present real-time dynamics simulation.
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Affiliation(s)
- Chao Xu
- Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry & Environment of South China Normal University, Guangzhou 51006, P. R. China.
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27
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Li J, Zhang M, Du C, Song P, Li X. A theoretical study on excited state proton transfer in 2-(2′-dihydroxyphenyl) benzoxazole. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3867] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Jia Li
- Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), School of Materials; Northeastern University; Shenyang Liaoning China
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Meixia Zhang
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Can Du
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Peng Song
- Department of Physics; Liaoning University; Shenyang Liaoning China
| | - Xiaodong Li
- Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), School of Materials; Northeastern University; Shenyang Liaoning China
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28
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Crespo-Otero R, Barbatti M. Recent Advances and Perspectives on Nonadiabatic Mixed Quantum–Classical Dynamics. Chem Rev 2018; 118:7026-7068. [DOI: 10.1021/acs.chemrev.7b00577] [Citation(s) in RCA: 301] [Impact Index Per Article: 50.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom
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29
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Yang D, Jia M, Song X, Zhang Q. Elaborating a new excited state intramolecular proton transfer (ESPT) mechanism for a new π-conjugated dye 2, 2′-((5-(2-(4-methoxyphenyl)ethenyl)-benzene-1,1-diyl)-bis-(nitrilomethylylidene)-diphenol). CAN J CHEM 2018. [DOI: 10.1139/cjc-2017-0628] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In this work, the excited state dynamical behavior of a novel π-conjugated dye 2,2′-((5-(2-(4-methoxyphenyl)ethenyl)-benzene-1,1-diyl)-bis-(nitrilomethylylidene)-diphenol) (C1) has been investigated. Two intramolecular hydrogen bonds of C1 are tested to pre-existing in the ground state via AIM and reduced density gradient. Using a time-dependent density functional theory (TDDFT) method, it has been substantiated that the intramolecular hydrogen bonds of C1 should be strengthened in the S1 state via analyzing fundamental bond length, bond angles, and corresponding infrared vibrational modes. The most obvious variation of these two hydrogen bonds is the O4–H5···N6 bond, which might play important roles in excited state behavior for the C1 system. Furthermore, based on electronic excitation, charge transfer could occur. Just due to this kind of charge re-distribution, two hydrogen bonds should be tighter in the first excited state, which is consistent with the variation of hydrogen bond lengths. Thus, the phenomenon of charge transfer is reasonable evidence for confirming the occurrence of the excited state proton transfer (ESPT) process in the S1 state. Our theoretically constructed potential energy surfaces of C1 show that excited state single proton transfer should occur along with the O4–H5···N6 hydrogen bond rather than the O1–H2···N3 bond. We not only clarify the ESIPT mechanism for C1 but put forward new affiliation and explain a previous experiment successfully.
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Affiliation(s)
- Dapeng Yang
- College of Mathematics and Information Science, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
- State Key Laboratory of Molecular Reaction Dynamics, Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Min Jia
- College of Mathematics and Information Science, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
| | - Xiaoyan Song
- College of Mathematics and Information Science, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
| | - Qiaoli Zhang
- College of Mathematics and Information Science, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
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30
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Lu X, Zhai Y, Zhang M, Song Y. A theoretical study on the ESPT mechanism for a novel Bis-HPBT fluorophore. J PHYS ORG CHEM 2018. [DOI: 10.1002/poc.3821] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xuemei Lu
- School of Metallurgy; Northeastern University; Shenyang China
| | - Yuchuan Zhai
- School of Metallurgy; Northeastern University; Shenyang China
| | - Meixia Zhang
- Department of Physics; Liaoning University; Shenyang China
| | - Yuzhi Song
- College of Physics and Electronics; Shandong Normal University; Jinan China
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31
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Szabla R, Góra RW, Šponer J. Ultrafast excited-state dynamics of isocytosine. Phys Chem Chem Phys 2018; 18:20208-18. [PMID: 27346684 DOI: 10.1039/c6cp01391k] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The alternative nucleobase isocytosine has long been considered as a plausible component of hypothetical primordial informational polymers. To examine this hypothesis we investigated the excited-state dynamics of the two most abundant forms of isocytosine in the gas phase (keto and enol). Our surface-hopping nonadiabatic molecular dynamics simulations employing the algebraic diagrammatic construction to the second order [ADC(2)] method for the electronic structure calculations suggest that both tautomers undergo efficient radiationless deactivation to the electronic ground state with time constants which amount to τketo = 182 fs and τenol = 533 fs. The dominant photorelaxation pathways correspond to ring-puckering (ππ* surface) and C[double bond, length as m-dash]O stretching/N-H tilting (nπ* surface) for the enol and keto forms respectively. Based on these findings, we infer that isocytosine is a relatively photostable compound in the gas phase and in these terms resembles biologically relevant nucleobases. The estimated S1 [radiolysis arrow - arrow with voltage kink] T1 intersystem crossing rate constant of 8.02 × 10(10) s(-1) suggests that triplet states might also play an important role in the overall excited-state dynamics of the keto tautomer. The reliability of ADC(2)-based surface-hopping molecular dynamics simulations was tested against multireference quantum-chemical calculations and the potential limitations of the employed ADC(2) approach are briefly discussed.
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Affiliation(s)
- Rafał Szabla
- Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265, Brno, Czech Republic.
| | - Robert W Góra
- Department of Physical and Quantum Chemistry, Faculty of Chemistry, Wrocław University of Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Jiří Šponer
- Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 61265, Brno, Czech Republic. and CEITEC-Central European Institute of Technology, Masaryk University, Campus Bohunice, Kamenice 5, CZ-62500 Brno, Czech Republic
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32
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Dommett M, Crespo-Otero R. Excited state proton transfer in 2'-hydroxychalcone derivatives. Phys Chem Chem Phys 2018; 19:2409-2416. [PMID: 28058421 DOI: 10.1039/c6cp07541j] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Fluorophores exhibiting excited-state intramolecular proton transfer (ESIPT) are promising candidates for applications ranging from imaging and probing to laser dyes, optoelectronic devices and molecular logic gates. Recently, ESIPT-active solid-state emitters based on 2'-hydroxychalcone have been synthesized. The compounds are almost non-emissive in solution but emit in the deep red/NIR region when crystalline. Herein, we present a comprehensive theoretical investigation of the gas-phase excited state relaxation pathways in five 2'-hydroxychalcone systems, using a combination of static and non-adiabatic simulations. We identify two competing non-radiative relaxation channels, driven by intramolecular rotation in the enol and keto excited states. Both mechanisms are accessible for the five compounds studied and their relative population depends on the nature of the substituent. The addition of electron-donating substituents greatly increases the propensity of the ESIPT pathway versus rotation in the enol state. The identification of the fundamental relaxation mechanisms is the first step towards understanding the aggregated emission phonomena of these compounds.
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Affiliation(s)
- Michael Dommett
- School of Biological and Chemical Sciences, Materials Research Institute, Queen Mary University of London, Mile End Road, London E1 4NS, UK.
| | - Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Materials Research Institute, Queen Mary University of London, Mile End Road, London E1 4NS, UK.
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33
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Sahu S, Das M, Bharti AK, Krishnamoorthy G. Proton transfer triggered proton transfer: a self-assisted twin excited state intramolecular proton transfer. Phys Chem Chem Phys 2018; 20:27131-27139. [DOI: 10.1039/c8cp03835j] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The double excited state intramolecular proton transfer (ESIPT) of 3,5-bis(2-hydroxyphenyl)-1H-1,2,4-triazole (bis-HPTA) has been investigated and found to undergo a new type of proton transfer.
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Affiliation(s)
- Saugata Sahu
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati
- India
| | - Minati Das
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati
- India
| | | | - G. Krishnamoorthy
- Department of Chemistry
- Indian Institute of Technology Guwahati
- Guwahati
- India
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34
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Dommett M, Rivera M, Crespo-Otero R. How Inter- and Intramolecular Processes Dictate Aggregation-Induced Emission in Crystals Undergoing Excited-State Proton Transfer. J Phys Chem Lett 2017; 8:6148-6153. [PMID: 29219318 DOI: 10.1021/acs.jpclett.7b02893] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Aggregation-induced emission (AIE) offers a route for the development of luminescent technologies with high quantum efficiencies. Excited-state intramolecular proton transfer (ESIPT) coupled to AIE can produce devices with emission across the visible spectrum. We use a combination of theoretical models to determine the factors that mediate fluorescence in molecular crystals undergoing ESIPT. Using two materials based on 2'-hydroxychalcone as exemplar cases, we analyze how inter- and intramolecular processes determine the emissive properties in the crystal environment. This systematic investigation extends the current interpretation of AIE to polar chromophores with multiple decay pathways. We find that population of nonradiative pathways is dictated by the electronic effects of the substituents and the degree of distortion allowed in the crystal environment. Localization of the electron density is crucial to maximize fluorescence via ESIPT. Our conclusions offer design strategies for the development of luminescent molecular crystals.
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Affiliation(s)
- Michael Dommett
- School of Biological and Chemical Sciences, Materials Research Institute, Queen Mary University of London , Mile End Road, London E1 4NS, United Kingdom
| | - Miguel Rivera
- School of Biological and Chemical Sciences, Materials Research Institute, Queen Mary University of London , Mile End Road, London E1 4NS, United Kingdom
| | - Rachel Crespo-Otero
- School of Biological and Chemical Sciences, Materials Research Institute, Queen Mary University of London , Mile End Road, London E1 4NS, United Kingdom
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35
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Zhao J, Liu X, Zheng Y. Controlling Excited State Single versus Double Proton Transfer for 2,2'-Bipyridyl-3,3'-diol: Solvent Effect. J Phys Chem A 2017; 121:4002-4008. [PMID: 28471672 DOI: 10.1021/acs.jpca.7b01404] [Citation(s) in RCA: 97] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this work, we theoretically investigate the sequential excited state double proton transfer (ESDPT) mechanism of a representative intramolecular hydroxyl (OH)-type hydrogen molecule 2,2'-bipyridyl-3,3'-diol (BP(OH)2). We mainly adopt three kinds of different polar solvents (nonpolar cyclohexane (CYH), polar acetonitrile (ACN), and moderate chloroform (CHCl3)) to explore solvent effects on this system. Two intramolecular hydrogen bonds of BP(OH)2 are testified to be strengthened in the S1 state, which provides possibility for ESDPT process. Explorations of charge redistribution and potential energy surfaces (PESs) reveal ESDPT process. Searching transition state (TS) structures in different polar aprotic solvents, we successfully regulate and control the stepwise ESDPT behaviors of BP(OH)2 through solvent polarity.
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Affiliation(s)
- Jinfeng Zhao
- School of Physics, Shandong University , Jinan 250100, China
| | - Xiaoyan Liu
- School of Physics, Shandong University , Jinan 250100, China
| | - Yujun Zheng
- School of Physics, Shandong University , Jinan 250100, China
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36
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Yue L, Yu L, Xu C, Lei Y, Liu Y, Zhu C. Benchmark Performance of Global Switching versus Local Switching for Trajectory Surface Hopping Molecular Dynamics Simulation: Cis
↔Trans
Azobenzene Photoisomerization. Chemphyschem 2017; 18:1274-1287. [DOI: 10.1002/cphc.201700049] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Ling Yue
- Institute of Molecular Science; Department of Applied Chemistry and Center for Interdisciplinary Molecular Science; National Chiao Tung University; Hsinchu 30010 Taiwan
- MOX Key Laboratory for Nonequilibrium, Synthesis and Modulation of Condensed Matter; State Key Laboratory for Mechanical Behavior of Materials and Institute of Chemistry for New Energy Materials; Department of Chemistry; Faculty of Science; Xi'an Jiaotong University; Xi'an 710049 P. R. China
| | - Le Yu
- Institute of Molecular Science; Department of Applied Chemistry and Center for Interdisciplinary Molecular Science; National Chiao Tung University; Hsinchu 30010 Taiwan
- Key Laboratory of Synthetic and Natural, Functional Molecule Chemistry of Ministry of Education; The College of Chemistry & Materials Science, Shaanxi key Laboratory of Physico-Inorganic Chemistry; Northwest University; Xi'an 710069 P. R. China
| | - Chao Xu
- Institute of Molecular Science; Department of Applied Chemistry and Center for Interdisciplinary Molecular Science; National Chiao Tung University; Hsinchu 30010 Taiwan
- Center for Computational Quantum Chemistry; South China Normal University; Guangzhou 510631 P. R. China
| | - Yibo Lei
- Key Laboratory of Synthetic and Natural, Functional Molecule Chemistry of Ministry of Education; The College of Chemistry & Materials Science, Shaanxi key Laboratory of Physico-Inorganic Chemistry; Northwest University; Xi'an 710069 P. R. China
| | - Yajun Liu
- Laboratory of Theoretical and Computational Photochemistry; Ministry of Education, College of Chemistry; Beijing Normal University; Beijing 100875 P. R. China
| | - Chaoyuan Zhu
- Institute of Molecular Science; Department of Applied Chemistry and Center for Interdisciplinary Molecular Science; National Chiao Tung University; Hsinchu 30010 Taiwan
- Center for Computational Quantum Chemistry; South China Normal University; Guangzhou 510631 P. R. China
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37
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Zhao J, Zheng Y. Elaboration and controlling excited state double proton transfer mechanism of 2,5-bis(benzoxazol-2-yl)thiophene-3,4-diol. Sci Rep 2017; 7:44897. [PMID: 28327590 PMCID: PMC5361162 DOI: 10.1038/srep44897] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 02/14/2017] [Indexed: 01/02/2023] Open
Abstract
In the present work, we theoretically illuminate the excited state double proton transfer (ESDPT) process about a novel synthesized system 2,5-bis(benzoxazol-2-yl)thiophene-3,4-diol (BBTD). Minor changes of both structure and charge redistribution deriving from photoexcitation result in obviously different excited state dynamical process. Exploration about our constructed S1-state potential energy surface (PES) indicates a stepwise ESDPT mechanism for BBTD. In addition, we present a new mechanism about regulating and controlling stepwise ESDPT process via external electric field.
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Affiliation(s)
- Jinfeng Zhao
- School of Physics, Shandong University, Jinan 250100, China
| | - Yujun Zheng
- School of Physics, Shandong University, Jinan 250100, China
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38
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Nowak MJ, Reva I, Rostkowska H, Lapinski L. UV-induced hydrogen-atom transfer and hydrogen-atom detachment in monomeric 7-azaindole isolated in Ar and n-H2 matrices. Phys Chem Chem Phys 2017; 19:11447-11454. [DOI: 10.1039/c7cp01363a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Upon UV excitation, the N1H form of 7-azaindole isolated in an Ar matrix transforms into N7H, C3H tautomers and the 7-azaindolyl radical; whereas only C3H and 7-azaindolyl radical products are photogenerated in solid H2 environment.
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Affiliation(s)
- Maciej J. Nowak
- Institute of Physics
- Polish Academy of Sciences
- 02-668 Warsaw
- Poland
| | - Igor Reva
- CQC
- Department of Chemistry
- University of Coimbra
- 3004-535 Coimbra
- Portugal
| | - Hanna Rostkowska
- Institute of Physics
- Polish Academy of Sciences
- 02-668 Warsaw
- Poland
| | - Leszek Lapinski
- Institute of Physics
- Polish Academy of Sciences
- 02-668 Warsaw
- Poland
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39
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Li C, Yang Y, Li D, Liu Y. A theoretical study of the potential energy surfaces for the double proton transfer reaction of model DNA base pairs. Phys Chem Chem Phys 2017; 19:4802-4808. [DOI: 10.1039/c6cp07716a] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The excited-state double proton transfer (ESDPT) mechanism in a model DNA base pair, 7-azaindole (7AI) dimer, has been debated over the years.
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Affiliation(s)
- Chaozheng Li
- College of Physics and Materials Science
- Henan Normal University
- Xinxiang 453007
- China
| | - Yonggang Yang
- College of Physics and Materials Science
- Henan Normal University
- Xinxiang 453007
- China
| | - Donglin Li
- College of Physics and Materials Science
- Henan Normal University
- Xinxiang 453007
- China
| | - Yufang Liu
- College of Physics and Materials Science
- Henan Normal University
- Xinxiang 453007
- China
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40
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Gan Y, Yue L, Guo X, Zhu C, Cao Z. Multi-state nonadiabatic deactivation mechanism of coumarin revealed by ab initio on-the-fly trajectory surface hopping dynamic simulation. Phys Chem Chem Phys 2017; 19:12094-12106. [DOI: 10.1039/c6cp08929a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An on-the-fly trajectory surface hopping dynamic simulation has been performed for revealing the multi-state nonadiabatic deactivation mechanism of coumarin.
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Affiliation(s)
- Yanzhen Gan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Province Key Lab of Theoretical and Computational Chemistry
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen 361005
- P. R. China
| | - Ling Yue
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter
- State Key Laboratory for Mechanical Behavior of Materials
- and Institute of Chemistry for New Energy Materials
- Department of Chemistry
- Faculty of Science
| | - Xugeng Guo
- Institute of Theoretical Chemistry
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng 475004
- P. R. China
| | - Chaoyuan Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Province Key Lab of Theoretical and Computational Chemistry
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen 361005
- P. R. China
| | - Zexing Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Province Key Lab of Theoretical and Computational Chemistry
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen 361005
- P. R. China
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41
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Yu XF, Yamazaki S, Taketsugu T. Solvent effects on the excited-state double proton transfer mechanism in the 7-azaindole dimer: a TDDFT study with the polarizable continuum model. Phys Chem Chem Phys 2017; 19:23289-23301. [DOI: 10.1039/c7cp04942k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solvent effects on the excited-state double proton transfer (ESDPT) mechanism in the 7-azaindole (7AI) dimer were investigated using the time-dependent density functional theory (TDDFT) method.
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Affiliation(s)
- Xue-fang Yu
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- China
| | - Shohei Yamazaki
- Department of Frontier Materials Chemistry
- Graduate School of Science and Technology
- Hirosaki University
- Hirosaki 036-8561
- Japan
| | - Tetsuya Taketsugu
- Department of Chemistry
- Faculty of Science
- Hokkaido University
- Sapporo 060-0810
- Japan
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42
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Yang D, Yang G, Zhao J, Zheng R, Wang Y. A competitive excited state dynamical process for the 2,2′-((1E,1′E)-((3,3′-dimethyl-[1,1′-biphenyl]-4,4′-diyl)-bis(azanylylidene))bis(methanylylidene))-diphenol system. RSC Adv 2017. [DOI: 10.1039/c6ra26038a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
By applying DFT and TDDFT methods, we theoretically investigate the excited state dynamical process for the 2,2′-((1E,1′E)-((3,3′-dimethyl-[1,1′-biphenyl]-4,4′-diyl)-bis(azanylylidene))bis(methanylylidene))-diphenol system.
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Affiliation(s)
- Dapeng Yang
- College of Mathematics and Information Science
- North China University of Water Resources and Electric Power
- Zhengzhou 450045
- China
- State Key Laboratory of Molecular Reaction Dynamics
| | - Guang Yang
- Department of Basic Science
- Jiaozuo University
- Jiaozuo 454000
- China
| | - Jinfeng Zhao
- State Key Laboratory of Molecular Reaction Dynamics
- Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
| | - Rui Zheng
- College of Mathematics and Information Science
- North China University of Water Resources and Electric Power
- Zhengzhou 450045
- China
| | - Yusheng Wang
- College of Mathematics and Information Science
- North China University of Water Resources and Electric Power
- Zhengzhou 450045
- China
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43
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Tuna D, Lu Y, Koslowski A, Thiel W. Semiempirical Quantum-Chemical Orthogonalization-Corrected Methods: Benchmarks of Electronically Excited States. J Chem Theory Comput 2016; 12:4400-22. [DOI: 10.1021/acs.jctc.6b00403] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Deniz Tuna
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| | - You Lu
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| | - Axel Koslowski
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
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44
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Xu C, Yu L, Zhu C, Yu J, Cao Z. Intersystem crossing-branched excited-state intramolecular proton transfer for o-nitrophenol: An ab initio on-the-fly nonadiabatic molecular dynamic simulation. Sci Rep 2016; 6:26768. [PMID: 27221650 PMCID: PMC4879701 DOI: 10.1038/srep26768] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 05/09/2016] [Indexed: 12/26/2022] Open
Abstract
The 6SA-CASSCF(10, 10)/6-31G (d, p) quantum chemistry method has been applied to perform on-the-fly trajectory surface hopping simulation with global switching algorithm and to explore excited-state intramolecular proton transfer reactions for the o-nitrophenol molecule within low-lying electronic singlet states (S0 and S1) and triplet states (T1 and T2). The decisive photoisomerization mechanisms of o-nitrophenol upon S1 excitation are found by three intersystem crossings and one conical intersection between two triplet states, in which T1 state plays an essential role. The present simulation shows branch ratios and timescales of three key processes via T1 state, non-hydrogen transfer with ratio 48% and timescale 300 fs, the tunneling hydrogen transfer with ratios 36% and timescale 10 ps, and the direct hydrogen transfer with ratios 13% and timescale 40 fs. The present simulated timescales might be close to low limit of the recent experiment results.
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Affiliation(s)
- Chao Xu
- College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| | - Le Yu
- Institute of Molecular Science, Department of Applied Chemistry and Center for Interdisciplinary Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, The College of Chemistry & Materials Science, Shaanxi key Laboratory of Physico-Inorganic Chemistry, Northwest University, Xi’an 710069, P. R. China
| | - Chaoyuan Zhu
- Institute of Molecular Science, Department of Applied Chemistry and Center for Interdisciplinary Molecular Science, National Chiao Tung University, Hsinchu 30010, Taiwan
- State Key Laboratory for Physical Chemistry of Solid Surfaces and Fujian Provincial Key Lab of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Jianguo Yu
- College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| | - Zexing Cao
- State Key Laboratory for Physical Chemistry of Solid Surfaces and Fujian Provincial Key Lab of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
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45
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Tachikawa H, Kawabata H. Molecular Design of Ionization-Induced Proton Switching Element Based on Fluorinated DNA Base Pair. J Phys Chem A 2016; 120:1529-35. [DOI: 10.1021/acs.jpca.6b00328] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Hiroto Tachikawa
- Division
of Applied Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| | - Hiroshi Kawabata
- Division
of Applied Chemistry, Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
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46
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Tuna D, Domcke W. Excited-state deactivation in 8-oxo-deoxyguanosine: comparison between anionic and neutral forms. Phys Chem Chem Phys 2016; 18:947-55. [DOI: 10.1039/c5cp05804j] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Ab initio explorations of excited-state potential-energy surfaces show that a radiationless deactivation mechanism via intramolecular excited-state proton transfer is available in neutral 8-oxo-deoxyguanosine, whereas it is not available in the anionic form.
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Affiliation(s)
- Deniz Tuna
- Max-Planck-Institut für Kohlenforschung
- 45470 Mülheim an der Ruhr
- Germany
| | - Wolfgang Domcke
- Department of Chemistry
- Technische Universität München
- 85747 Garching
- Germany
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47
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Tuna D, Lefrancois D, Wolański Ł, Gozem S, Schapiro I, Andruniów T, Dreuw A, Olivucci M. Assessment of Approximate Coupled-Cluster and Algebraic-Diagrammatic-Construction Methods for Ground- and Excited-State Reaction Paths and the Conical-Intersection Seam of a Retinal-Chromophore Model. J Chem Theory Comput 2015; 11:5758-81. [PMID: 26642989 DOI: 10.1021/acs.jctc.5b00022] [Citation(s) in RCA: 107] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
As a minimal model of the chromophore of rhodopsin proteins, the penta-2,4-dieniminium cation (PSB3) poses a challenging test system for the assessment of electronic-structure methods for the exploration of ground- and excited-state potential-energy surfaces, the topography of conical intersections, and the dimensionality (topology) of the branching space. Herein, we report on the performance of the approximate linear-response coupled-cluster method of second order (CC2) and the algebraic-diagrammatic-construction scheme of the polarization propagator of second and third orders (ADC(2) and ADC(3)). For the ADC(2) method, we considered both the strict and extended variants (ADC(2)-s and ADC(2)-x). For both CC2 and ADC methods, we also tested the spin-component-scaled (SCS) and spin-opposite-scaled (SOS) variants. We have explored several ground- and excited-state reaction paths, a circular path centered around the S1/S0 surface crossing, and a 2D scan of the potential-energy surfaces along the branching space. We find that the CC2 and ADC methods yield a different dimensionality of the intersection space. While the ADC methods yield a linear intersection topology, we find a conical intersection topology for the CC2 method. We present computational evidence showing that the linear-response CC2 method yields a surface crossing between the reference state and the first response state featuring characteristics that are expected for a true conical intersection. Finally, we test the performance of these methods for the approximate geometry optimization of the S1/S0 minimum-energy conical intersection and compare the geometries with available data from multireference methods. The present study provides new insight into the performance of linear-response CC2 and polarization-propagator ADC methods for molecular electronic spectroscopy and applications in computational photochemistry.
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Affiliation(s)
- Deniz Tuna
- Max-Planck-Institut für Kohlenforschung , 45470 Mülheim an der Ruhr, Germany
| | - Daniel Lefrancois
- Interdisciplinary Center for Scientific Computing, University of Heidelberg , 69120 Heidelberg, Germany
| | - Łukasz Wolański
- Department of Chemistry, Wrocław University of Technology , 50370 Wrocław, Poland
| | - Samer Gozem
- Department of Chemistry, University of Southern California , Los Angeles, California 90089, United States
| | - Igor Schapiro
- Institut de Physique et Chimie des Matériaux de Strasbourg & Labex NIE, Université de Strasbourg, CNRS UMR 7504 , Strasbourg 67034, France
| | - Tadeusz Andruniów
- Department of Chemistry, Wrocław University of Technology , 50370 Wrocław, Poland
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, University of Heidelberg , 69120 Heidelberg, Germany
| | - Massimo Olivucci
- Department of Chemistry, Bowling Green State University , Bowling Green, Ohio 43402, United States.,Dipartimento di Biotecnologie, Chimica e Farmacia, Universitá de Siena , 53100 Siena, Italy
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