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Li H, Briccolani-Bandini L, Tirri B, Cardini G, Brémond E, Sancho-García JC, Adamo C. Evaluating Noncovalent Interactions in Halogenated Molecules with Double-Hybrid Functionals and a Dedicated Small Basis Set. J Phys Chem A 2024. [PMID: 39067011 DOI: 10.1021/acs.jpca.4c03007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
We present here an extension of our recently developed PBE-QIDH/DH-SVPD basis set to halogen atoms, with the aim of obtaining, for weakly interacting halogenated molecules, interaction energies close to those provided by a large basis set (def2-TZVPP) coupled to empirical dispersion potential. The core of our approach is the split-valence basis set, DH-SVPD, that has been developed for F, Cl, Br, and I atoms using a self-consistent formula, containing only energy terms computed for dimers and the corresponding monomers at the same level of theory. The basis set developed considering four systems, one for each halogen atoms, has been then tested on the X40, X4 × 10 benchmarks as well as on other two, less standard, data sets. Finally, a large system (380 atoms) has been also considered as a "crash" test. Our results show that the simple and nonempirical PBE-QIDH/DH-SVPD approach is able to provide accurate results for interaction energies of all the considered systems and can thus be considered as a cheaper alternative to DH functionals paired with empirical dispersion corrections and a large basis set of triple-ζ quality.
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Affiliation(s)
- Hanwei Li
- Chimie ParisTech, PSL Research University, CNRS, Institute of Chemistry for Health and Life Sciences, F-75005 Paris, France
| | - Lorenzo Briccolani-Bandini
- Dipartimento di Chimica "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino 50019, Italy
| | - Bernardino Tirri
- Chimie ParisTech, PSL Research University, CNRS, Institute of Chemistry for Health and Life Sciences, F-75005 Paris, France
| | - Gianni Cardini
- Dipartimento di Chimica "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino 50019, Italy
| | - Eric Brémond
- ITODYS, CNRS, Université de Paris, Paris F-75006, France
| | | | - Carlo Adamo
- Chimie ParisTech, PSL Research University, CNRS, Institute of Chemistry for Health and Life Sciences, F-75005 Paris, France
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2
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Gorges J, Bädorf B, Hansen A, Grimme S. Efficient Computation of the Interaction Energies of Very Large Non-covalently Bound Complexes. Synlett 2022. [DOI: 10.1055/s-0042-1753141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
AbstractWe present a new benchmark set consisting of 16 large non-covalently bound systems (LNCI16) ranging from 380 up to 1988 atoms and featuring diverse interaction motives. Gas-phase interaction energies are calculated with various composite DFT, semi-empirical quantum mechanical (SQM), and force field (FF) methods and are evaluated using accurate DFT reference values. Of the employed QM methods, PBEh-3c proves to be the most robust for large systems with a relative mean absolute deviation (relMAD) of 8.5% with respect to the reference interaction energies. r2SCAN-3c yields an even smaller relMAD, at least for the subset of complexes for which the calculation could be converged, but is less robust for systems with smaller HOMO–LUMO gaps. The inclusion of Fock-exchange is therefore important for the description of very large non-covalent interaction (NCI) complexes in the gas phase. GFN2-xTB was found to be the best performer of the SQM methods with an excellent result of only 11.1% deviation. From the assessed force fields, GFN-FF and GAFF achieve the best accuracy. Considering their low computational costs, both can be recommended for routine calculations of very large NCI complexes, with GFN-FF being clearly superior in terms of general applicability. Hence, GFN-FF may be routinely applied in supramolecular synthesis planning.1 Introduction2 The LNCI16 Benchmark Set3 Computational Details4 Generation of Reference Values5 Results and Discussion6 Conclusions
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3
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Salthammer T, Monegel F, Schulz N, Uhde E, Grimme S, Seibert J, Hohm U, Palm W. Sensory Perception of Non-Deuterated and Deuterated Organic Compounds. Chemistry 2021; 27:1046-1056. [PMID: 33058253 PMCID: PMC7839723 DOI: 10.1002/chem.202003754] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 10/10/2020] [Indexed: 11/24/2022]
Abstract
The chemical background of olfactory perception has been subject of intensive research, but no available model can fully explain the sense of smell. There are also inconsistent results on the role of the isotopology of molecules. In experiments with human subjects it was found that the isotope effect is weak with acetone and D6 -acetone. In contrast, clear differences were observed in the perception of octanoic acid and D15 -octanoic acid. Furthermore, a trained sniffer dog was initially able to distinguish between these isotopologues of octanoic acid. In chromatographic measurements, the respective deuterated molecule showed weaker interaction with a non-polar liquid phase. Quantum chemical calculations give evidence that deuterated octanoic acid binds more strongly to a model receptor than non-deuterated. In contrast, the binding of the non-deuterated molecule is stronger with acetone. The isotope effect is calculated in the framework of statistical mechanics. It results from a complicated interplay between various thermostatistical contributions to the non-covalent free binding energies and it turns out to be very molecule-specific. The vibrational terms including non-classical zero-point energies play about the same role as rotational/translational contributions and are larger than bond length effects for the differential isotope perception of odor for which general rules cannot be derived.
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Affiliation(s)
- Tunga Salthammer
- Department of Material Analysis and Indoor ChemistryFraunhofer WKI38108BraunschweigGermany
| | - Friederike Monegel
- Department of Material Analysis and Indoor ChemistryFraunhofer WKI38108BraunschweigGermany
| | - Nicole Schulz
- Department of Material Analysis and Indoor ChemistryFraunhofer WKI38108BraunschweigGermany
| | - Erik Uhde
- Department of Material Analysis and Indoor ChemistryFraunhofer WKI38108BraunschweigGermany
| | - Stefan Grimme
- Mulliken Center for Theoretical ChemistryInstitute for Physical and Theoretical ChemistryUniversity of Bonn53115BonnGermany
| | - Jakob Seibert
- Mulliken Center for Theoretical ChemistryInstitute for Physical and Theoretical ChemistryUniversity of Bonn53115BonnGermany
| | - Uwe Hohm
- Institute of Physical and Theoretical ChemistryUniversity of Braunschweig—Institute of Technology38106BraunschweigGermany
| | - Wolf‐Ulrich Palm
- Institute of Sustainable and Environmental ChemistryLeuphana University Lüneburg21335LüneburgGermany
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4
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Frontera A. Noble Gas Bonding Interactions Involving Xenon Oxides and Fluorides. Molecules 2020; 25:molecules25153419. [PMID: 32731517 PMCID: PMC7435756 DOI: 10.3390/molecules25153419] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 07/26/2020] [Accepted: 07/27/2020] [Indexed: 12/18/2022] Open
Abstract
Noble gas (or aerogen) bond (NgB) can be outlined as the attractive interaction between an electron-rich atom or group of atoms and any element of Group-18 acting as an electron acceptor. The IUPAC already recommended systematic nomenclature for the interactions of groups 17 and 16 (halogen and chalcogen bonds, respectively). Investigations dealing with noncovalent interactions involving main group elements (acting as Lewis acids) have rapidly grown in recent years. They are becoming acting players in essential fields such as crystal engineering, supramolecular chemistry, and catalysis. For obvious reasons, the works devoted to the study of noncovalent Ng-bonding interactions are significantly less abundant than halogen, chalcogen, pnictogen, and tetrel bonding. Nevertheless, in this short review, relevant theoretical and experimental investigations on noncovalent interactions involving Xenon are emphasized. Several theoretical works have described the physical nature of NgB and their interplay with other noncovalent interactions, which are discussed herein. Moreover, exploring the Cambridge Structural Database (CSD) and Inorganic Crystal Structure Database (ICSD), it is demonstrated that NgB interactions are crucial in governing the X-ray packing of xenon derivatives. Concretely, special attention is given to xenon fluorides and xenon oxides, since they exhibit a strong tendency to establish NgBs.
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Affiliation(s)
- Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Crta de valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
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5
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Engelage E, Reinhard D, Huber SM. Is There a Single Ideal Parameter for Halogen-Bonding-Based Lewis Acidity? Chemistry 2020; 26:3843-3861. [PMID: 31943430 PMCID: PMC7154672 DOI: 10.1002/chem.201905273] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Indexed: 01/08/2023]
Abstract
Halogen-bond donors (halogen-based Lewis acids) have now found various applications in diverse fields of chemistry. The goal of this study was to identify a parameter obtainable from a single DFT calculation that reliably describes halogen-bonding strength (Lewis acidity). First, several DFT methods were benchmarked against the CCSD(T) CBS binding data of complexes of 17 carbon-based halogen-bond donors with chloride and ammonia as representative Lewis bases, which revealed M05-2X with a partially augmented def2-TZVP(D) basis set as the best model chemistry. The best single parameter to predict halogen-bonding strengths was the static σ-hole depth, but it still provided inaccurate predictions for a series of compounds. Thus, a more reliable parameter, Ωσ* , has been developed through the linear combination of the σ-hole depth and the σ*(C-I) energy, which was further validated against neutral, cationic, halogen- and nitrogen-based halogen-bond donors with very good performance.
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Affiliation(s)
- Elric Engelage
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
| | - Dominik Reinhard
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
| | - Stefan M. Huber
- Organische Chemie IFakultät für Chemie und BiochemieRuhr-Universität BochumUniversitätsstraße 15044801BochumGermany
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6
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Bauzá A, Frontera A. σ/π-Hole noble gas bonding interactions: Insights from theory and experiment. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213112] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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7
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Wu WX, Wang H, Jin WJ. Various guest PAHs locked into a soft-cavity-type host assembled via halogen bonds to form luminescent cocrystals. CrystEngComm 2020. [DOI: 10.1039/d0ce00965b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Host chains assembled from 1,4-DITFB and PPNO mainly using C–I⋯−O–N+ halogen bonds present a remarkable capacity to accommodate PAHs of various sizes, and the generated host–guest ternary cocrystals exhibit diverse luminescence properties.
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Affiliation(s)
- Wen Xin Wu
- College of Chemistry
- Beijing Normal University
- Beijing
- People's Republic of China
| | - Hui Wang
- College of Chemistry & Material Science
- Shanxi Normal University
- Linfen
- People's Republic of China
| | - Wei Jun Jin
- College of Chemistry
- Beijing Normal University
- Beijing
- People's Republic of China
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Naeem Ahmed M, Yasin KA, Aziz S, Khan SU, Tahir MN, Gil DM, Frontera A. Relevant π-hole tetrel bonding interactions in ethyl 2-triazolyl-2-oxoacetate derivatives: Hirshfeld surface analysis and DFT calculations. CrystEngComm 2020. [DOI: 10.1039/d0ce00335b] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
We report the synthesis and X-ray characterization of four triazole derivatives that include an α-ketoester functionality and two phenyl substituents. The compounds form self-assembled dimers in the solid state establishing two symmetrically equivalent O⋯π-hole interactions.
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Affiliation(s)
- Muhammad Naeem Ahmed
- Department of Chemistry
- The University of Azad Jammu and Kashmir
- Muzaffarabad
- 13100 Pakistan
| | - Khawaja Ansar Yasin
- Department of Chemistry
- The University of Azad Jammu and Kashmir
- Muzaffarabad
- 13100 Pakistan
| | - Shahid Aziz
- Department of Chemistry
- Mirpur University of Science and Technology (MUST) Mirpur-10250 (AJK)
- Pakistan
| | - Saba Urooge Khan
- Department of Polymer Engineering and Technology University of The Punjab Lahore
- Pakistan
| | | | - Diego Mauricio Gil
- INBIOFAL (CONICET – UNT)
- Instituto de Química Orgánica – Cátedra de Química Orgánica I
- Facultad de Bioquímica
- Química y Farmacia
- Universidad Nacional de Tucumán
| | - Antonio Frontera
- Department de Quimica
- Universitat de les Illes Balears
- 07122 Palma de Mallorca Baleares
- Spain
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9
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Franconetti A, Frontera A. Theoretical and Crystallographic Study of Lead(IV) Tetrel Bonding Interactions. Chemistry 2019; 25:6007-6013. [DOI: 10.1002/chem.201900447] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 03/04/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Antonio Franconetti
- Departament de QuímicaUniversitat de les Illes Balears Crta de Valldemossa km 7.7 07122 Palma de Mallorca Spain
| | - Antonio Frontera
- Departament de QuímicaUniversitat de les Illes Balears Crta de Valldemossa km 7.7 07122 Palma de Mallorca Spain
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10
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Bauzá A, Seth SK, Frontera A. Tetrel bonding interactions at work: Impact on tin and lead coordination compounds. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.01.003] [Citation(s) in RCA: 91] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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11
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Warzok U, Marianski M, Hoffmann W, Turunen L, Rissanen K, Pagel K, Schalley CA. Surprising solvent-induced structural rearrangements in large [N···I +···N] halogen-bonded supramolecular capsules: an ion mobility-mass spectrometry study. Chem Sci 2018; 9:8343-8351. [PMID: 30542581 PMCID: PMC6243472 DOI: 10.1039/c8sc03040e] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 09/05/2018] [Indexed: 12/28/2022] Open
Abstract
Coordinative halogen bonds have recently gained interest for the assembly of supramolecular capsules. Ion mobility-mass spectrometry and theoretical calculations now reveal the well-defined gas-phase structures of dimeric and hexameric [N···I+···N] halogen-bonded capsules with counterions located inside their cavities as guests. The solution reactivity of the large hexameric capsule shows the intriguing solvent-dependent equilibrium between the hexamer and an unprecedented pentameric [N···I+···N] halogen-bonded capsule, when the solvent is changed from chloroform to dichloromethane. The intrinsic flexibility of the cavitands enables this novel structure to adopt a pseudo-trigonal bipyramidal geometry with nine [N···I+···N] bonds along the edges and two pyridine binding sites uncomplexed.
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Affiliation(s)
- Ulrike Warzok
- Institut für Chemie und Biochemie , Freie Universität Berlin , Takustraße 3 , 14195 Berlin , Germany .
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Waldemar Hoffmann
- Institut für Chemie und Biochemie , Freie Universität Berlin , Takustraße 3 , 14195 Berlin , Germany .
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Lotta Turunen
- Department of Chemistry , NanoScience Center , University of Jyväskylä , P. O. Box 35 , 40014 Jyväskylä , Finland
| | - Kari Rissanen
- Department of Chemistry , NanoScience Center , University of Jyväskylä , P. O. Box 35 , 40014 Jyväskylä , Finland
| | - Kevin Pagel
- Institut für Chemie und Biochemie , Freie Universität Berlin , Takustraße 3 , 14195 Berlin , Germany .
- Fritz-Haber-Institut der Max-Planck-Gesellschaft , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Christoph A Schalley
- Institut für Chemie und Biochemie , Freie Universität Berlin , Takustraße 3 , 14195 Berlin , Germany .
- School of Life Sciences , Northwestern Polytechnical University , 127 Youyi Xilu , Xi'an , Shaanxi 710072 , P. R. China
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12
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Engelage E, Schulz N, Heinen F, Huber SM, Truhlar DG, Cramer CJ. Refined SMD Parameters for Bromine and Iodine Accurately Model Halogen‐Bonding Interactions in Solution. Chemistry 2018; 24:15983-15987. [DOI: 10.1002/chem.201803652] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Indexed: 12/29/2022]
Affiliation(s)
- Elric Engelage
- Organische Chemie I Fakultät für Chemie und Biochemie Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Nils Schulz
- Organische Chemie I Fakultät für Chemie und Biochemie Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Flemming Heinen
- Organische Chemie I Fakultät für Chemie und Biochemie Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Stefan M. Huber
- Organische Chemie I Fakultät für Chemie und Biochemie Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute University of Minnesota 207 Pleasant Street SE Minneapolis Minnesota 55455-0431 USA
| | - Christopher J. Cramer
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute University of Minnesota 207 Pleasant Street SE Minneapolis Minnesota 55455-0431 USA
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13
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Lao KU, Herbert JM. A Simple Correction for Nonadditive Dispersion within Extended Symmetry-Adapted Perturbation Theory (XSAPT). J Chem Theory Comput 2018; 14:5128-5142. [DOI: 10.1021/acs.jctc.8b00527] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ka Un Lao
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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14
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Carreras L, Serrano-Torné M, van Leeuwen PWNM, Vidal-Ferran A. XBphos-Rh: a halogen-bond assembled supramolecular catalyst. Chem Sci 2018; 9:3644-3648. [PMID: 29780494 PMCID: PMC5934742 DOI: 10.1039/c8sc00233a] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 02/17/2018] [Indexed: 01/13/2023] Open
Abstract
XBphos-Rh constitutes the first example of halogen bonding as the driving force behind the assembly of a transition-metal catalyst for hydroborations.
The use of halogen bonding as a tool to construct a catalyst backbone is reported. Specifically, pyridyl- and iodotetrafluoroaryl-substituted phosphines were assembled in the presence of a rhodium(i) precursor to form the corresponding halogen-bonded complex XBphos-Rh. The presence of fluorine substituents at the iodo-containing supramolecular motif was not necessary for halogen bonding to occur due to the template effect exerted by the rhodium center during formation of the halogen-bonded complex. The halogen-bonded supramolecular complexes were successfully tested in the catalytic hydroboration of terminal alkynes.
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Affiliation(s)
- Lucas Carreras
- Institute of Chemical Research of Catalonia (ICIQ) , The Barcelona Institute of Science and Technology , Av. Països Catalans 16 , 43007 Tarragona , Spain .
| | - Marta Serrano-Torné
- Institute of Chemical Research of Catalonia (ICIQ) , The Barcelona Institute of Science and Technology , Av. Països Catalans 16 , 43007 Tarragona , Spain .
| | | | - Anton Vidal-Ferran
- Institute of Chemical Research of Catalonia (ICIQ) , The Barcelona Institute of Science and Technology , Av. Països Catalans 16 , 43007 Tarragona , Spain . .,ICREA , Pg. Lluís Companys 23 , 08010 Barcelona , Spain
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15
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Kesharwani MK, Manna D, Sylvetsky N, Martin JML. The X40×10 Halogen Bonding Benchmark Revisited: Surprising Importance of (n–1)d Subvalence Correlation. J Phys Chem A 2018; 122:2184-2197. [DOI: 10.1021/acs.jpca.7b10958] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Manoj K. Kesharwani
- Department of Organic Chemistry, Weizmann Institute of Science, 76100 Reḥovot, Israel
| | - Debashree Manna
- Department of Organic Chemistry, Weizmann Institute of Science, 76100 Reḥovot, Israel
| | - Nitai Sylvetsky
- Department of Organic Chemistry, Weizmann Institute of Science, 76100 Reḥovot, Israel
| | - Jan M. L. Martin
- Department of Organic Chemistry, Weizmann Institute of Science, 76100 Reḥovot, Israel
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16
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Szell PMJ, Siiskonen A, Catalano L, Cavallo G, Terraneo G, Priimagi A, Bryce DL, Metrangolo P. Halogen-bond driven self-assembly of triangular macrocycles. NEW J CHEM 2018. [DOI: 10.1039/c8nj00759d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Halogen bonds drive the self-assembly of 2-iodoethynylpyridine and 2- iodoethynyl-1-methyl-imidazole into discrete supramolecular triangles.
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Affiliation(s)
- Patrick M. J. Szell
- Department of Chemistry and Biomolecular Sciences
- University of Ottawa
- Ottawa
- Ontario K1N 6N5
- Canada
| | - Antti Siiskonen
- Laboratory of Chemistry and Bioengineering
- Tampere University of Technology
- FI-33101 Tampere
- Finland
| | - Luca Catalano
- Laboratory of Supramolecular and Bio-Nanomaterials (SupraBioNanoLab)
- Department of Chemistry, Materials, and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
- Italy
| | - Gabriella Cavallo
- Laboratory of Supramolecular and Bio-Nanomaterials (SupraBioNanoLab)
- Department of Chemistry, Materials, and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
- Italy
| | - Giancarlo Terraneo
- Laboratory of Supramolecular and Bio-Nanomaterials (SupraBioNanoLab)
- Department of Chemistry, Materials, and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
- Italy
| | - Arri Priimagi
- Laboratory of Chemistry and Bioengineering
- Tampere University of Technology
- FI-33101 Tampere
- Finland
| | - David L. Bryce
- Department of Chemistry and Biomolecular Sciences
- University of Ottawa
- Ottawa
- Ontario K1N 6N5
- Canada
| | - Pierangelo Metrangolo
- Laboratory of Supramolecular and Bio-Nanomaterials (SupraBioNanoLab)
- Department of Chemistry, Materials, and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
- Italy
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Abstract
Abstract
The halogen bond, corresponding to an attractive interaction between an electrophilic region in a halogen (X) and a nucleophile (B) yielding a R−X⋯B contact, found applications in many fields such as supramolecular chemistry, crystal engineering, medicinal chemistry, and chemical biology. Their large range of applications also led to an increased interest in their study using computational methods aiming not only at understanding the phenomena at a fundamental level, but also to help in the interpretation of results and guide the experimental work. Herein, a succinct overview of the recent theoretical and experimental developments is given starting by discussing the nature of the halogen bond and the latest theoretical insights on this topic. Then, the effects of the surrounding environment on halogen bonds are presented followed by a presentation of the available method benchmarks. Finally, recent experimental applications where the contribution of computational chemistry was fundamental are discussed, thus highlighting the synergy between the lab and modeling techniques.
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18
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Grimme S, Bannwarth C, Caldeweyher E, Pisarek J, Hansen A. A general intermolecular force field based on tight-binding quantum chemical calculations. J Chem Phys 2017; 147:161708. [DOI: 10.1063/1.4991798] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn,
Germany
| | - Christoph Bannwarth
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn,
Germany
| | - Eike Caldeweyher
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn,
Germany
| | - Jana Pisarek
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn,
Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn,
Germany
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19
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Klamt A. The
COSMO
and
COSMO‐RS
solvation models. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2017. [DOI: 10.1002/wcms.1338] [Citation(s) in RCA: 115] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Andreas Klamt
- COSMOlogic GmbH&CoKG Leverkusen Germany
- Institute of Physical and Theoretical ChemistryUniversity of Regensburg Regensburg Germany
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20
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Gropp C, Husch T, Trapp N, Reiher M, Diederich F. Dispersion and Halogen-Bonding Interactions: Binding of the Axial Conformers of Monohalo- and (±)-trans-1,2-Dihalocyclohexanes in Enantiopure Alleno-Acetylenic Cages. J Am Chem Soc 2017; 139:12190-12200. [DOI: 10.1021/jacs.7b05461] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Cornelius Gropp
- Laboratorium
für Organische Chemie, ETH Zurich, Vladimir-Prelog-Weg 3, 8093 Zurich, Switzerland
| | - Tamara Husch
- Laboratorium
für Physikalische Chemie, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Nils Trapp
- Laboratorium
für Organische Chemie, ETH Zurich, Vladimir-Prelog-Weg 3, 8093 Zurich, Switzerland
| | - Markus Reiher
- Laboratorium
für Physikalische Chemie, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - François Diederich
- Laboratorium
für Organische Chemie, ETH Zurich, Vladimir-Prelog-Weg 3, 8093 Zurich, Switzerland
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21
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Schaub TA, Sure R, Hampel F, Grimme S, Kivala M. Quantum Chemical Dissection of the Shortest P=O⋅⋅⋅I Halogen Bond: The Decisive Role of Crystal Packing Effects. Chemistry 2017; 23:5687-5691. [DOI: 10.1002/chem.201701234] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2017] [Indexed: 01/04/2023]
Affiliation(s)
- Tobias A. Schaub
- Department of Chemistry and Pharmacy, Chair of Organic Chemistry I; University of Erlangen-Nürnberg; Henkestrasse 42 91054 Erlangen Germany
| | - Rebecca Sure
- Mulliken Center for Theoretical Chemistry; Institute for Physical and Theoretical Chemistry; Universität Bonn; Beringstrasse 4 53115 Bonn Germany
| | - Frank Hampel
- Department of Chemistry and Pharmacy, Chair of Organic Chemistry I; University of Erlangen-Nürnberg; Henkestrasse 42 91054 Erlangen Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry; Institute for Physical and Theoretical Chemistry; Universität Bonn; Beringstrasse 4 53115 Bonn Germany
| | - Milan Kivala
- Department of Chemistry and Pharmacy, Chair of Organic Chemistry I; University of Erlangen-Nürnberg; Henkestrasse 42 91054 Erlangen Germany
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22
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Dumele O, Schreib B, Warzok U, Trapp N, Schalley CA, Diederich F. Halogen-Bonded Supramolecular Capsules in the Solid State, in Solution, and in the Gas Phase. Angew Chem Int Ed Engl 2016; 56:1152-1157. [DOI: 10.1002/anie.201610884] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2016] [Indexed: 12/26/2022]
Affiliation(s)
- Oliver Dumele
- Laboratorium für Organische Chemie; ETH Zurich; Vladimir-Prelog-Weg 3 8093 Zurich Switzerland
- Department of Chemistry; Northwestern University; 2145 Sheridan Rd Evanston IL 60208 USA
| | - Benedikt Schreib
- Laboratorium für Organische Chemie; ETH Zurich; Vladimir-Prelog-Weg 3 8093 Zurich Switzerland
| | - Ulrike Warzok
- Institut für Chemie und Biochemie der; Freien Universität; Takustrasse 3 14195 Berlin Germany
| | - Nils Trapp
- Laboratorium für Organische Chemie; ETH Zurich; Vladimir-Prelog-Weg 3 8093 Zurich Switzerland
| | - Christoph A. Schalley
- Institut für Chemie und Biochemie der; Freien Universität; Takustrasse 3 14195 Berlin Germany
| | - François Diederich
- Laboratorium für Organische Chemie; ETH Zurich; Vladimir-Prelog-Weg 3 8093 Zurich Switzerland
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23
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Dumele O, Schreib B, Warzok U, Trapp N, Schalley CA, Diederich F. Halogenverbrückte supramolekulare Kapseln im Festkörper, in Lösung und in der Gasphase. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201610884] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Oliver Dumele
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
- Department of Chemistry; Northwestern University; 2145 Sheridan Rd Evanston IL 60208 USA
| | - Benedikt Schreib
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
| | - Ulrike Warzok
- Institut für Chemie und Biochemie; Freie Universität Berlin; Takustraße 3 14195 Berlin Deutschland
| | - Nils Trapp
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
| | - Christoph A. Schalley
- Institut für Chemie und Biochemie; Freie Universität Berlin; Takustraße 3 14195 Berlin Deutschland
| | - François Diederich
- Laboratorium für Organische Chemie; ETH Zürich; Vladimir-Prelog-Weg 3 8093 Zürich Schweiz
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