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Baykov SV, Ivanov DM, Kasatkina SO, Galmés B, Frontera A, Resnati G, Kukushkin VY. Stacking Interactions: A Supramolecular Approach to Upgrade Weak Halogen Bond Donors. Chemistry 2022; 28:e202201869. [PMID: 36178324 PMCID: PMC10099561 DOI: 10.1002/chem.202201869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Indexed: 11/10/2022]
Abstract
The co-crystallization of tetracyanobenzene (TCB) with haloarenes ArX provided six new co-crystals TCB ⋅ ArX (ArX=PhCl, PhBr, 4-MeC6 H4 Cl, 4-MeC6 H4 Br, 4-MeOC6 H4 Cl, 1,2-Br2 C6 H4 ) which were studied by X-ray diffraction. In these systems, the strong collective effect of π⋅⋅⋅π stacking interactions and lone pair-(X)⋅⋅⋅π-hole-(C) bondings between TCB and ArX promote the strength of X⋅⋅⋅Ncyano halogen bonding (HaB). Theoretical studies showed that the stacking interactions affect the σ-hole depth of the haloarenes, thus significantly boosting their ability to function as HaB donors. According to the molecular electrostatic potential calculations, the σ- hole-(Cl) value (1.5 kcal/mol) in the haloarene 4-MeOC6 H4 Cl (featuring an electron-rich arene moiety and exhibiting very poor σ-hole-(Cl) ability) increases significantly in the stacked trimer (TCB)2 ⋅ 4-MeOC6 H4 Cl (12.5 kcal/mol). Theoretical DFT calculations demonstrate the dramatic increase of X⋅⋅⋅Ncyano HaB strength for stacked trimers in comparison with parent unstacked haloarenes.
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Affiliation(s)
- Sergey V. Baykov
- Institute of ChemistrySaint Petersburg State University7/9 Universitetskaya Nab.Saint Petersburg199034Russian Federation
- Research School of Chemistry and Applied Biomedical SciencesTomsk Polytechnic UniversityTomsk634034Russian Federation
| | - Daniil M. Ivanov
- Institute of ChemistrySaint Petersburg State University7/9 Universitetskaya Nab.Saint Petersburg199034Russian Federation
- Research School of Chemistry and Applied Biomedical SciencesTomsk Polytechnic UniversityTomsk634034Russian Federation
| | - Svetlana O. Kasatkina
- Institute of ChemistrySaint Petersburg State University7/9 Universitetskaya Nab.Saint Petersburg199034Russian Federation
| | - Bartomeu Galmés
- Departament de QuímicaUniversitat de les Illes BalearsCrta de Valldemossa km 7.507122Palma de Mallorca, BalearesSpain
| | - Antonio Frontera
- Departament de QuímicaUniversitat de les Illes BalearsCrta de Valldemossa km 7.507122Palma de Mallorca, BalearesSpain
| | - Giuseppe Resnati
- Research School of Chemistry and Applied Biomedical SciencesTomsk Polytechnic UniversityTomsk634034Russian Federation
- NFMLabDepartment of Chemistry, Materials, Chemical Engineering“Giulio Natta Politecnico di Milano”via Mancinelli 7I-20131MilanoItaly
| | - Vadim Y. Kukushkin
- Institute of ChemistrySaint Petersburg State University7/9 Universitetskaya Nab.Saint Petersburg199034Russian Federation
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2
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Millward MJ, Ellis E, Ward JW, Clayden J. Hydantoin-bridged medium ring scaffolds by migratory insertion of urea-tethered nitrile anions into aromatic C-N bonds. Chem Sci 2020; 12:2091-2096. [PMID: 34163972 PMCID: PMC8179327 DOI: 10.1039/d0sc06188c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 12/11/2020] [Indexed: 01/07/2023] Open
Abstract
Bicyclic or tricyclic nitrogen-containing heterocyclic scaffolds were constructed rapidly by intramolecular nucleophilic aromatic substitution of metallated nitriles tethered by a urea linkage to a series of electronically unactivated heterocyclic precursors. The substitution reaction constitutes a ring expansion, enabled by the conformationally constrained tether between the nitrile and the heterocycle. Attack of the metallated urea leaving group on the nitrile generates a hydantoin that bridges the polycyclic products. X-ray crystallography reveals ring-dependant strain within the hydantoin.
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Affiliation(s)
- Makenzie J Millward
- School of Chemistry, University of Bristol Cantock's Close Bristol BS8 1TS UK
| | - Emily Ellis
- School of Chemistry, University of Bristol Cantock's Close Bristol BS8 1TS UK
| | - John W Ward
- School of Chemistry, University of Bristol Cantock's Close Bristol BS8 1TS UK
| | - Jonathan Clayden
- School of Chemistry, University of Bristol Cantock's Close Bristol BS8 1TS UK
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3
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Hayouni S, Michon C, Morvan D, Bellière-Baca V, Agbossou-Niedercorn F. Homogeneous palladium-catalyzed enantioselective hydrogenation of 5-methylenhydantoin for the synthesis of L-Valine. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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4
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Affiliation(s)
- Revannath L. Sutar
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum, 44801, Germany
| | - Stefan M. Huber
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum, 44801, Germany
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5
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Čebular K, Božić BĐ, Stavber S. 1,3-Dibromo-5,5-dimethylhydantoin as a Precatalyst for Activation of Carbonyl Functionality. Molecules 2019; 24:molecules24142608. [PMID: 31319626 PMCID: PMC6681419 DOI: 10.3390/molecules24142608] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/10/2019] [Accepted: 07/15/2019] [Indexed: 11/16/2022] Open
Abstract
Activation of carbonyl moiety is one of the most rudimentary approaches in organic synthesis and is crucial for a plethora of industrial-scale condensation reactions. In esterification and aldol condensation, which represent two of the most important reactions, the susceptibility of the carbonyl group to nucleophile attack allows the construction of a variety of useful organic compounds. In this context, there is a constant need for development of and improvement in the methods for addition-elimination reactions via activation of carbonyl functionality. In this paper, an advanced methodology for the direct esterification of carboxylic acids and alcohols, and for aldol condensation of aldehydes using widely available, inexpensive, and metal-free 1,3-dibromo-5,5-dimethylhydantoin under neat reaction conditions is reported. The method is air- and moisture-tolerant, allowing simple synthetic and isolation procedures for both reactions presented in this paper. The reaction pathway for esterification is proposed and a scale-up of certain industrially important derivatives is performed.
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Affiliation(s)
- Klara Čebular
- Department of Physical and Organic Chemistry, Jožef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
- Jožef Stefan International Postgraduate School, Jamova 39, 1000 Ljubljana, Slovenia
| | - Bojan Đ Božić
- Department of Physical and Organic Chemistry, Jožef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
- Institute of Physiology and Biochemistry, Faculty of Biology, University of Belgrade, Studentski trg 16, 11000 Belgrade, Serbia
| | - Stojan Stavber
- Department of Physical and Organic Chemistry, Jožef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia.
- Jožef Stefan International Postgraduate School, Jamova 39, 1000 Ljubljana, Slovenia.
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6
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Torubaev YV, Skabitsky IV. The energy frameworks of aufbau synthon modules in 4-cyanopyridine co-crystals. CrystEngComm 2019. [DOI: 10.1039/c9ce01174a] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The supramolecular arrangement of 4-cyanopyridine (4CNpy) in its native crystal form and its co-crystals with halogen bond (XB) donors is discussed in terms of energy frameworks of long-range synthon aufbau modules (LSAMs) energy frameworks.
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Affiliation(s)
- Y. V. Torubaev
- N.S. Kurnakov Institute of General and Inorganic Chemistry of Russian Academy of Sciences
- Moscow
- Russia
| | - I. V. Skabitsky
- N.S. Kurnakov Institute of General and Inorganic Chemistry of Russian Academy of Sciences
- Moscow
- Russia
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Imai T, Niijima E, Terada S, Wzorek A, Soloshonok VA, Hori A, Kitagawa O. Chirality-dependent halogen bonds in axially chiral quinazolin-4-one derivatives bearing ortho-halophenyl groups. CrystEngComm 2019. [DOI: 10.1039/c9ce00320g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
In the crystals of racemic axially chiral quinazolinones, the formation of intermolecular halogen bonds was detected.
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Affiliation(s)
- Tomomi Imai
- Department of Applied Chemistry (QOL Improvement and Life Science Consortium)
- Shibaura Institute of Technology
- Tokyo
- Japan
| | - Erina Niijima
- Department of Applied Chemistry (QOL Improvement and Life Science Consortium)
- Shibaura Institute of Technology
- Tokyo
- Japan
| | - Shumpei Terada
- Department of Applied Chemistry (QOL Improvement and Life Science Consortium)
- Shibaura Institute of Technology
- Tokyo
- Japan
| | - Alicja Wzorek
- Institute of Chemistry
- Jan Kochanowski University in Kielce
- 25-406 Kielce
- Poland
| | - Vadim A. Soloshonok
- Department of Organic Chemistry I
- Faculty of Chemistry
- University of the Basque Country UPV/EHU
- 20018 San Sebastián
- Spain
| | - Akiko Hori
- Graduate School of Engineering and Science
- Shibaura Institute of Technology
- Saitama 337-8570
- Japan
| | - Osamu Kitagawa
- Department of Applied Chemistry (QOL Improvement and Life Science Consortium)
- Shibaura Institute of Technology
- Tokyo
- Japan
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Feng G, Xu H, Li W, Zhang J. Resolution of chiral nitrogen atoms in 1D helical coordination polymers. INORG CHEM COMMUN 2018. [DOI: 10.1016/j.inoche.2018.08.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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9
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Peluso P, Mamane V, Dallocchio R, Dessì A, Villano R, Sanna D, Aubert E, Pale P, Cossu S. Polysaccharide-based chiral stationary phases as halogen bond acceptors: A novel strategy for detection of stereoselective σ-hole bonds in solution. J Sep Sci 2018; 41:1247-1256. [PMID: 29239526 DOI: 10.1002/jssc.201701206] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2017] [Revised: 12/01/2017] [Accepted: 12/02/2017] [Indexed: 12/15/2022]
Abstract
In the last few years, halogen bonds have been exploited in a variety of research areas both in the solid state and in solution. Nevertheless, several factors make formation and detection of halogen bonds in solution challenging. Moreover, to date, few chiral molecules containing electrophilic halogens as recognition sites have been reported. Recently, we described the first series of halogen-bond-driven enantioseparations performed on cellulose tris(3,5-dimethylphenylcarbamate) by high-performance liquid chromatography. Herein the performances of amylose tris(3,5-dimethylphenylcarbamate) as halogen bond acceptor were also investigated and compared with respect to cellulose tris(3,5-dimethylphenylcarbamate). With the aim to explore the effect of polysaccharide backbone on the enantioseparations, the thermodynamic parameters governing the halogen-dependent enantioseparations on both cellulose and amylose polymers were determined by a study at variable temperature and compared. Molecular dynamics were performed to model the halogen bond in polysaccharide-analyte complexes. Chiral halogenated 4,4'-bipyridines were used as test compounds (halogen bond donors). On this basis, a practical method for detection of stereoselective halogen bonds in solution was developed, which is based on the unprecedented use of high-performance liquid chromatography as technical tool with polysaccharide polymers as molecular probes (halogen bond acceptors). The analytical strategy showed higher sensitivity for the detection of weak halogen bonds.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB CNR - Sede secondaria di Sassari, Sassari, Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR 7177, Equipe LASYROC, Strasbourg, France
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB CNR - Sede secondaria di Sassari, Sassari, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB CNR - Sede secondaria di Sassari, Sassari, Italy
| | - Rosaria Villano
- Istituto di Chimica Biomolecolare ICB CNR - Sede secondaria di Sassari, Sassari, Italy
| | - Daniele Sanna
- Istituto di Chimica Biomolecolare ICB CNR - Sede secondaria di Sassari, Sassari, Italy
| | - Emmanuel Aubert
- CRM2, UMR CNRS 7036, Université de Lorraine, Vandoeuvre-les-Nancy, France
| | - Patrick Pale
- Institut de Chimie de Strasbourg, UMR 7177, Equipe LASYROC, Strasbourg, France
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Mestre Venezia, Italy
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Weinberger C, Hines R, Zeller M, Rosokha SV. Continuum of covalent to intermolecular bonding in the halogen-bonded complexes of 1,4-diazabicyclo[2.2.2]octane with bromine-containing electrophiles. Chem Commun (Camb) 2018; 54:8060-8063. [DOI: 10.1039/c8cc04629h] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The Br⋯N bonds in a series of halogen-bonded complexes change gradually from the typical intermolecular to the traditional covalent bond.
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Affiliation(s)
| | - Rachel Hines
- Department of Chemistry
- Ball State University
- Muncie
- USA
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11
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Carletta A, Zbačnik M, Vitković M, Tumanov N, Stilinović V, Wouters J, Cinčić D. Halogen-bonded cocrystals ofN-salicylidene Schiff bases and iodoperfluorinated benzenes: hydroxyl oxygen as a halogen bond acceptor. CrystEngComm 2018. [DOI: 10.1039/c8ce01145a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Novel halogen bondedo-hydroxy imine cocrystals with 1,3,5-triiodotrifluoro-benzene and 1,2-, 1,3- and 1,4-diiodotetrafluorobenzene have been synthesized.
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Affiliation(s)
- Andrea Carletta
- Department of Chemistry
- NISM
- University of Namur
- B-5000 Namur
- Belgium
| | - Marija Zbačnik
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10002 Zagreb
- Croatia
| | - Matea Vitković
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10002 Zagreb
- Croatia
| | - Nikolay Tumanov
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10002 Zagreb
- Croatia
| | - Vladimir Stilinović
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10002 Zagreb
- Croatia
| | - Johan Wouters
- Department of Chemistry
- NISM
- University of Namur
- B-5000 Namur
- Belgium
| | - Dominik Cinčić
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10002 Zagreb
- Croatia
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12
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Aubert E, Espinosa E, Nicolas I, Jeannin O, Fourmigué M. Toward a reverse hierarchy of halogen bonding between bromine and iodine. Faraday Discuss 2017; 203:389-406. [DOI: 10.1039/c7fd00067g] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We compare here the halogen bond characteristics of bimolecular adducts involving either N-bromo- or N-iodosaccharin as strong halogen bond donors, with 4-picoline as a common XB acceptor. In the NBSac·Pic system, the bromine atom of NBSac is displaced toward the picoline, almost at a median position between the two nitrogen atoms, NSac and N′Pic, with NSac⋯Br and Br⋯N′Pic distances at 2.073(6) and 2.098(6) Å respectively. This extreme situation contrasts with the analogous iodine derivative, NISac·Pic, where the NSac–I and I⋯N′Pic distances amount to 2.223(4) and 2.301(4) Å respectively. Periodic DFT calculations, and molecular calculations of adducts (PBEPBE-D2 aug-cc-pVTZ) either at the experimental frozen geometry or with optimization of the halogen position, indicate a more important degree of covalency (i.e. shared-shell character) in the adduct formed with the bromine atom. A stronger charge transfer to the picoline is also found for the bromine (+0.27 |e|) than for the iodine (+0.18 |e|) system. This inversion of halogen bond strength between I and Br finds its origin in the strong covalent character of the interaction in these adducts, in line with the strength of covalent N–Br and N–I bonds. Detailed characterization of the critical points (CPs) of the L(r) = −∇2ρ(r) function along bonding directions has permitted the adducts to be distinguished and they can be respectively described as “neutral” NISac/Pic and “intermediate” NSac/Br/Pic, the latter with Br being close to formal equivalent NSac⋯Br and Br⋯N′Pic interactions but still more associated to the XB donor than to the picoline, as indicated by the topological and energetic properties of the ρ(r) function at the bond critical points (BCPs).
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Affiliation(s)
- Emmanuel Aubert
- Laboratoire CRM2
- UMR CNRS 7036
- Institut Jean Barriol
- Université de Lorraine
- 54506 Vandoeuvre-les-Nancy
| | - Enrique Espinosa
- Laboratoire CRM2
- UMR CNRS 7036
- Institut Jean Barriol
- Université de Lorraine
- 54506 Vandoeuvre-les-Nancy
| | - Irène Nicolas
- Institut des Sciences Chimiques de Rennes (ISCR)
- UMR CNRS 6226
- Université de Rennes 1
- Campus de Beaulieu
- 35042 Rennes
| | - Olivier Jeannin
- Institut des Sciences Chimiques de Rennes (ISCR)
- UMR CNRS 6226
- Université de Rennes 1
- Campus de Beaulieu
- 35042 Rennes
| | - Marc Fourmigué
- Institut des Sciences Chimiques de Rennes (ISCR)
- UMR CNRS 6226
- Université de Rennes 1
- Campus de Beaulieu
- 35042 Rennes
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