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Pizzano E, Baroncelli F, Melandri S, Evangelisti L, Ricci M, Mazzacurati M, Pori M, Torreggiani A, Maris A. Vibrational Features of Oxyamines: A Comparative Study of N,N-Diethylhydroxylamine and N,N-Diethylacetyloxyamine. Chemphyschem 2024; 25:e202400222. [PMID: 38963901 DOI: 10.1002/cphc.202400222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/10/2024] [Accepted: 07/03/2024] [Indexed: 07/06/2024]
Abstract
The ability of oxyamines to undergo homolytic cleavage of the O-C bond, leading to the formation of stable radicals, is widely used in polymerization processes and to prevent oxidative stress in materials. We present a mid and near-infrared spectroscopy study on two model compounds, N,N-diethylhydroxyloxyamine (C4H11NO) and its acetyl derivative N,N-diethylacetyloxyamine (C6H13NO2) in the liquid phase. The analysis of the spectra is based on a complete exploration of the conformational space, coupled to harmonic and anharmonic calculations performed using the generalized second-order vibrational perturbation theory (GVPT2) formalism at the B3LYP-D3(BJ)/Def2-TZVP level of calculation and potential energy distribution analysis. In the most stable species out of 25, the three amine chains present an all-anti arrangement, with the carbonyl oxygen atom pointing towards the nitrogen lone pair. The simulated spectra are in overall good agreement with the experimental ones, and suitable for the assignment of the main observed bands. Furthermore, similarities and divergences between the two molecules are discussed.
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Affiliation(s)
- Emanuele Pizzano
- Department of Chemistry G. Ciamician, University of Bologna, Bologna, Italy
- BASF Italia S.p.A., Pontecchio Marconi, BO, Italy
| | - Filippo Baroncelli
- Department of Chemistry G. Ciamician, University of Bologna, Bologna, Italy
| | - Sonia Melandri
- Department of Chemistry G. Ciamician, University of Bologna, Bologna, Italy
- Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, Forlì, Italy
- Interdepartmental Centre for Industrial Agrifood Research (CIRI Agrifood), University of Bologna, Cesena, Italy
| | - Luca Evangelisti
- Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, Forlì, Italy
- Interdepartmental Centre for Industrial Agrifood Research (CIRI Agrifood), University of Bologna, Cesena, Italy
- Department of Chemistry G. Ciamician - Campus of Ravenna, University of Bologna, Ravenna, Italy
| | | | | | - Matteo Pori
- BASF Italia S.p.A., Pontecchio Marconi, BO, Italy
| | | | - Assimo Maris
- Department of Chemistry G. Ciamician, University of Bologna, Bologna, Italy
- Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, Forlì, Italy
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2
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Zhang J, Li Y, Wang B, Song J, Li M, Chen P, Shen Z, Wu Y, Mao C, Cao H, Wang X, Zhang W, Lu T. Rapid evaluation of Radix Paeoniae Alba and its processed products by near-infrared spectroscopy combined with multivariate algorithms. Anal Bioanal Chem 2023; 415:1719-1732. [PMID: 36763106 DOI: 10.1007/s00216-023-04570-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 01/07/2023] [Accepted: 01/25/2023] [Indexed: 02/11/2023]
Abstract
It is well known that the processing method of herbal medicine has a complex impact on the active components and clinical efficacy, which is difficult to measure. As a representative herb medicine with diverse processing methods, Radix Paeoniae Alba (RPA) and its processed products differ greatly in clinical efficacy. However, in some cases, different processed products are confused for use in clinical practice. Therefore, it is necessary to strictly control the quality of RPA and its processed products. Giving that the time-consuming and laborious operation of traditional quality control methods, a comprehensive strategy of near-infrared (NIR) spectroscopy combined with multivariate algorithms was proposed. This strategy has the advantages of being rapid and non-destructive, not only qualitatively distinguishing RPA and various processed products but also enabling quantitative prediction of five bioactive components. Qualitatively, the subspace clustering algorithm successfully differentiated RPA and three processed products, with an accuracy rate of 97.1%; quantitatively, interval combination optimization (ICO), competitive adaptive reweighted sampling (CARS), and competitive adaptive reweighted sampling combined with successive projections algorithm (CARS-SPA) were used to optimize the PLS model, and satisfactory results were obtained in terms of wavelength selection. In conclusion, it is feasible to use NIR spectroscopy to rapidly evaluate the effect of processing methods on the quality of RPA, which provides a meaningful reference for quality control of other herbal medicines with numerous processing methods.
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Affiliation(s)
- Jiuba Zhang
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Yu Li
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Bin Wang
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Jiantao Song
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Mingxuan Li
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Peng Chen
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Zheyuan Shen
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Yi Wu
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Chunqin Mao
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Hui Cao
- Research Center for Traditional Chinese Medicine of Lingnan (Southern China), Jinan University, Guangzhou, 510632, China
| | - Xiachang Wang
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China
| | - Wei Zhang
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China. .,College of Pharmacy, Anhui University of Chinese Medicine, Hefei, 230038, China. .,Anhui Province Key Laboratory of Traditional Chinese Medicine Decoction Pieces of New Manufacturing Technology, Hefei, 230038, China.
| | - Tulin Lu
- College of Pharmacy, Nanjing University of Chinese Medicine, 138 Xianlin Rd, Nanjing, 210023, People's Republic of China.
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3
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Salvitti G, Pizzano E, Baroncelli F, Melandri S, Evangelisti L, Negri F, Coreno M, Prince KC, Ciavardini A, Sa'adeh H, Pori M, Mazzacurati M, Maris A. Spectroscopic and quantum mechanical study of a scavenger molecule: N,N-diethylhydroxylamine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 281:121555. [PMID: 35926273 DOI: 10.1016/j.saa.2022.121555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/20/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
Abstract
We report a combination of quantum mechanical calculations and a range of spectroscopic measurements in the gas phase of N,N-diethylhydroxylamine, an important scavenger compound. Three conformers were observed by pulsed jet Fourier transform microwave spectroscopy in the 6.5-18.5 GHz frequency range. They are characterized by the hydroxyl hydrogen atom being in trans orientation with respect to the bisector of the CNC angle while the side alkyl chains can be both trans (global minimum, Cs symmetry, A = 7608.1078(4), B = 2020.2988(2) and C = 1760.5423(2) MHz) or one trans and the other gauche (second energy minimum, A = 5302.896(1), B = 2395.9822(4) and C = 1804.8567(3) MHz) or gauche' (third energy minimum, A = 5960.8025(6), B = 2273.6627(4) and C = 1975.8074(4) MHz). For the global minimum, the 13Cα,13Cβ and 15N isotopologues were observed in natural abundance, allowing for an accurate partial structure determination. Moreover, several lines were detected by free jet absorption millimeter wave spectroscopy in the 59.6-74.4 GHz spectral range. The electron binding energies of the highest occupied molecular orbital and the next-to-highest occupied molecular orbital, determined by photoelectron spectroscopy, are 8.95 and 10.76 eV, respectively. Supporting calculations evidence that, (i) upon ionization of the HOMO, the molecular structure changes from an amine to an N-oxoammonium arrangement and (ii) the 0-0 of the HOMO-1 photoionization is 10.46 eV. The K-shell binding energies, determined by X-ray photoelectron spectroscopy, are 290.42 eV (Cβ), 291.45 eV (Cα), 405.98 eV (N) and 538.75 eV (O). The Fourier transform near infrared spectrum is reported and a tentative assignment is proposed. The equilibrium wavenumber (ω̃ = 3811 cm-1) and the anharmonicity constant (ω̃χ = -87.5 cm-1) of the hydroxyl stretching mode were estimated using a quadratic model.
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Affiliation(s)
- Giovanna Salvitti
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy
| | - Emanuele Pizzano
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy; BASF Italia S.p.A., Pontecchio Marconi, I-40037 Bologna, Italy
| | - Filippo Baroncelli
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy
| | - Sonia Melandri
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy; Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, I-47121 Forlì, Italy; Interdepartmental Centre for Industrial Agrifood Research (CIRI Agrifood), University of Bologna, I-47521 Cesena, Italy
| | - Luca Evangelisti
- Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, I-47121 Forlì, Italy; Interdepartmental Centre for Industrial Agrifood Research (CIRI Agrifood), University of Bologna, I-47521 Cesena, Italy; Department of Chemistry "G. Ciamician", University of Bologna I-48123 Ravenna, Italy
| | - Fabrizia Negri
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy; INSTM, UdR Bologna, I-40126 Bologna, Italy
| | - Marcello Coreno
- CNR-ISM, Trieste LD2 Unit, I-34149 Basovizza, Trieste, Italy
| | - Kevin C Prince
- Elettra-Sincrotrone Trieste, in Area Science Park, I-34149 Basovizza, Trieste, Italy; Department of Chemistry and Biotechnology, School of Science, Computing and Engineering Technology, Swinburne University of Technology, Hawthorn, Victoria, Australia
| | - Alessandra Ciavardini
- CNR-ISM, Trieste LD2 Unit, I-34149 Basovizza, Trieste, Italy; Elettra-Sincrotrone Trieste, in Area Science Park, I-34149 Basovizza, Trieste, Italy; Laboratory of Quantum Optics, University of Nova Gorica, Sl-5001 Nova Gorica, Slovenia
| | - Hanan Sa'adeh
- Elettra-Sincrotrone Trieste, in Area Science Park, I-34149 Basovizza, Trieste, Italy; Department of Physics, The University of Jordan, JO-11942 Amman, Jordan
| | - Matteo Pori
- BASF Italia S.p.A., Pontecchio Marconi, I-40037 Bologna, Italy
| | | | - Assimo Maris
- Department of Chemistry "G. Ciamician", University of Bologna, I-40126 Bologna, Italy; Interdepartmental Centre for Industrial Aerospace Research (CIRI Aerospace), University of Bologna, I-47121 Forlì, Italy.
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4
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Beć KB, Grabska J, Huck CW. In silico NIR spectroscopy - A review. Molecular fingerprint, interpretation of calibration models, understanding of matrix effects and instrumental difference. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 279:121438. [PMID: 35667136 DOI: 10.1016/j.saa.2022.121438] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 05/20/2022] [Accepted: 05/25/2022] [Indexed: 06/15/2023]
Abstract
Quantum mechanical calculations are routinely used as a major support in mid-infrared (MIR) and Raman spectroscopy. In contrast, practical limitations for long time formed a barrier to developing a similar synergy between near-infrared (NIR) spectroscopy and computational chemistry. Recent advances in theoretical methods suitable for calculation of NIR spectra opened the pathway to modeling NIR spectra of various molecules. Accurate theoretical reproduction of NIR spectra of molecules reaching the size of long-chain fatty acids was accomplished so far. In silico NIR spectroscopy, where the spectra are calculated ab initio, provides substantial improvement in our understanding of the overtones and combination bands that overlap in staggering numbers and create complex lineshape typical for NIR spectra. This improves the comprehension of the spectral information enabling access to rich and detail molecular footprint, essential for fundamental research and useful in routine analysis by NIR spectroscopy and chemometrics. This review article summarizes the most recent accomplishments in the emerging field with examples of simulated NIR spectra of molecules reaching long-chain fatty acids and polymers. In addition to detailed NIR band assignments and new physical insights, simulated spectra enable innovative support in applications. Understanding of the difference in the performance observed between miniaturized NIR spectrometers and chemical interpretation of the chemometric models are noteworthy here. These new elements integrated into NIR spectroscopy framework enable a knowledge-based design of the analysis with comprehension of the processed chemical information.
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Affiliation(s)
- Krzysztof B Beć
- University of Innsbruck, Institute of Analytical Chemistry and Radiochemistry, Innrain 80-82, 6020 Innsbruck, Austria.
| | - Justyna Grabska
- University of Innsbruck, Institute of Analytical Chemistry and Radiochemistry, Innrain 80-82, 6020 Innsbruck, Austria.
| | - Christian W Huck
- University of Innsbruck, Institute of Analytical Chemistry and Radiochemistry, Innrain 80-82, 6020 Innsbruck, Austria.
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Kasemsumran S, Boondaeng A, Ngowsuwan K, Jungtheerapanich S, Apiwatanapiwat W, Janchai P, Meelaksana J, Vaithanomsat P. Simultaneous Monitoring of the Evolution of Chemical Parameters in the Fermentation Process of Pineapple Fruit Wine Using the Liquid Probe for Near-Infrared Coupled with Chemometrics. Foods 2022; 11:377. [PMID: 35159527 PMCID: PMC8834468 DOI: 10.3390/foods11030377] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Revised: 01/25/2022] [Accepted: 01/26/2022] [Indexed: 12/24/2022] Open
Abstract
This study used Fourier transform-near-infrared (FT-NIR) spectroscopy equipped with the liquid probe in combination with an efficient wavelength selection method named searching combination moving window partial least squares (SCMWPLS) for the determination of ethanol, total soluble solids, total acidity, and total volatile acid contents in pineapple fruit wine fermentation using Saccharomyces cerevisiae var. burgundy. Two fermentation batches were produced, and the NIR spectral data of the calibration samples in the wavenumber range of 11,536-3952 cm-1 were obtained over ten days of the fermentation period. SCMWPLS coupled with second derivatives searched and optimized spectral intervals containing useful information for building calibration models of four parameters. All models were validated by test samples obtained from an independent fermentation batch. The SCMWPLS models showed better predictions (the lowest value of prediction error and the highest value of residual predictive deviation) with acceptable statistical results (under confidence limits) among the results achieved by using the whole region. The results of this study demonstrated that FT-NIR spectroscopy using a liquid probe coupled with SCMWPLS could select the optimized wavelength regions while reducing spectral points and increasing accuracy for simultaneously monitoring the evolution of four chemical parameters in pineapple fruit wine fermentation.
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Affiliation(s)
- Sumaporn Kasemsumran
- Laboratory of Non-Destructive Quality Evaluation of Commodities, Kasetsart Agricultural and Agro-Industrial Product Improvement Institute (KAPI), Kasetsart University, Bangkok 10900, Thailand; (K.N.); (S.J.)
| | - Antika Boondaeng
- Laboratory of Enzyme and Microbiology, KAPI, Kasetsart University, Bangkok 10900, Thailand; (A.B.); (W.A.); (P.J.); (J.M.); (P.V.)
| | - Kraireuk Ngowsuwan
- Laboratory of Non-Destructive Quality Evaluation of Commodities, Kasetsart Agricultural and Agro-Industrial Product Improvement Institute (KAPI), Kasetsart University, Bangkok 10900, Thailand; (K.N.); (S.J.)
| | - Sunee Jungtheerapanich
- Laboratory of Non-Destructive Quality Evaluation of Commodities, Kasetsart Agricultural and Agro-Industrial Product Improvement Institute (KAPI), Kasetsart University, Bangkok 10900, Thailand; (K.N.); (S.J.)
| | - Waraporn Apiwatanapiwat
- Laboratory of Enzyme and Microbiology, KAPI, Kasetsart University, Bangkok 10900, Thailand; (A.B.); (W.A.); (P.J.); (J.M.); (P.V.)
| | - Phornphimon Janchai
- Laboratory of Enzyme and Microbiology, KAPI, Kasetsart University, Bangkok 10900, Thailand; (A.B.); (W.A.); (P.J.); (J.M.); (P.V.)
| | - Jiraporn Meelaksana
- Laboratory of Enzyme and Microbiology, KAPI, Kasetsart University, Bangkok 10900, Thailand; (A.B.); (W.A.); (P.J.); (J.M.); (P.V.)
| | - Pilanee Vaithanomsat
- Laboratory of Enzyme and Microbiology, KAPI, Kasetsart University, Bangkok 10900, Thailand; (A.B.); (W.A.); (P.J.); (J.M.); (P.V.)
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Singh S, Majer M, Czarnecki MA, Morisawa Y, Ozaki Y. Solvent Effect on Assembling and Interactions in Solutions of Phenol: Infrared Spectroscopic and Density Functional Theory Study. APPLIED SPECTROSCOPY 2022; 76:28-37. [PMID: 34643138 DOI: 10.1177/00037028211052302] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
This work provides new insight into assembling of phenol in various solvents and competition between different kinds of interactions. To examine both weak and strong interactions, we selected a series of non-aromatic and aromatic solvents. Infrared spectra were measured at low (0.05 M) and high (2 M) phenol content. In addition, we performed density functional theory calculations of the structures and harmonic vibrational spectra of 1:1 complexes of phenol with the solvents and the associates of phenol from dimer to tetramer. Based on these results, we divided the solvents into three groups. The first group consists of non-aromatic solvents weakly interacting with phenol. Depending on the concentration, molecules of phenol in these solvents remain non-bonded or self-associated. In diluted solutions of phenol in chlorinated non-aromatic solvents do not appear free OH groups, since they are involved in a weak OH···Cl interaction. It is of note that in diluted solutions of phenol in tetramethyl ethylene both the non-bonded and bonded OH coexists due to solvent-solvent interactions. The second group consists of aromatic solvents with methyl or chlorine substituents. At low concentration, the molecules of phenol are involved in the phenol-solvent OH···π interaction and the strength of these interactions depends on the solvent properties. At a higher phenol content an equilibrium exists between phenol-solvent OH···π and phenol-phenol OH···OH interactions. Finally, the third group includes the aromatic and non-aromatic solvents with highly polar group (C≡N). In these solvents, regardless of the concentration all molecules of phenol are involved in the solute-solvent OH···NC interaction. Comparison of the experimental and theoretical band parameters reveals that molecules of phenol in non-aromatic solvents prefer the cyclic associates, while in the aromatic solvents they tend to form the linear associates.
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Affiliation(s)
- Swapnil Singh
- Faculty of Chemistry, University of Wrocław, Wrocław, Poland
| | - Mateusz Majer
- Faculty of Chemistry, University of Wrocław, Wrocław, Poland
| | | | - Yusuke Morisawa
- Department of Chemistry, School of Science and Engineering, Kindai University, Osaka, Japan
| | - Yukihiro Ozaki
- School of Biological and Environmental Sciences, Kwansei Gakuin University, Hyogo, Japan
- Toyota Physical and Chemical Research Institute, Aichi, Japan
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7
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Beć KB, Grabska J, Badzoka J, Huck CW. Spectra-structure correlations in NIR region of polymers from quantum chemical calculations. The cases of aromatic ring, C=O, C≡N and C-Cl functionalities. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 262:120085. [PMID: 34174679 DOI: 10.1016/j.saa.2021.120085] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 06/08/2021] [Accepted: 06/12/2021] [Indexed: 06/13/2023]
Abstract
Near-infrared (NIR) spectroscopy is a valued analytical tool in various applications involving polymers. However, complex nature of NIR spectra imposes difficulties in their direct interpretation. Here, anharmonic quantum chemical calculations are used to simulate NIR spectra of nine polymers; acrylonitrile butadiene styrene (ABS), ethylene-vinyl acetate (EVAC), polycarbonate (PC), polyethylene terephthalate (PET), polylactide or polylactic acid (PLA), polymethylmethacrylate (PMMA), polyoxymethylene (POM), polystyrene (PS) and polyvinylchloride (PVC). The generalized spectra-structure correlations are derived for these systems with focus given to the manifestation in NIR spectra of aromatic ring, C=O, C≡N and C-Cl functionalities. It is concluded that the nature of NIR polymer bands is only moderately sensitive to the remote chemical neighborhood. The majority of NIR absorption of polymers originates from binary combination bands, while the first overtones are meaningful only in ca. 6200-5500 cm-1 region. The contribution of the overtone bands is relatively higher for the polymers bearing aromatic rings because of higher intensity of C-H stretching overtones. Highly characteristic combination bands of the modes localized in aromatic ring (ring deformation and CH stretching) are relatively independent on the remaining structure of the polymer. The combination bands originating from C=O group are more sensitive to the chemical neighborhood in near proximity, forming a useful fingerprint for a specific polymer. In contrast, the vibrational bands of C≡N functionality are far less useful in NIR region than in infrared (IR) region. With aid of the calculated absorption bands, structural specificity of NIR spectroscopy of polymers can be markedly improved.
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Affiliation(s)
- Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
| | - Justyna Grabska
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Jovan Badzoka
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria
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8
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Beć KB, Grabska J, Huck CW, Mazurek S, Czarnecki MA. Anharmonicity and Spectra-Structure Correlations in MIR and NIR Spectra of Crystalline Menadione (Vitamin K 3). Molecules 2021; 26:6779. [PMID: 34833871 PMCID: PMC8620535 DOI: 10.3390/molecules26226779] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 11/03/2021] [Accepted: 11/08/2021] [Indexed: 12/03/2022] Open
Abstract
Mid-infrared (MIR) and near-infrared (NIR) spectra of crystalline menadione (vitamin K3) were measured and analyzed with aid of quantum chemical calculations. The calculations were carried out using the harmonic approach for the periodic model of crystal lattice and the anharmonic DVPT2 calculations applied for the single molecule model. The theoretical spectra accurately reconstructed the experimental ones permitting for reliable assignment of the MIR and NIR bands. For the first time, a detailed analysis of the NIR spectrum of a molecular system based on a naphthoquinone moiety was performed to elucidate the relationship between the chemical structure of menadione and the origin of the overtones and combination bands. In addition, the importance of these bands during interpretation of the MIR spectrum was demonstrated. The overtones and combination bands contribute to 46.4% of the total intensity of menadione in the range of 3600-2600 cm-1. Evidently, these bands play a key role in shaping of the C-H stretching region of MIR spectrum. We have shown also that the spectral regions without fundamentals may provide valuable structural information. For example, the theoretical calculations reliably reconstructed numerous overtones and combination bands in the 4000-3600 and 2800-1800 cm-1 ranges. These results, provide a comprehensive origin of the fundamentals, overtones and combination bands in the NIR and MIR spectra of menadione, and the relationship of these spectral features with the molecular structure.
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Affiliation(s)
- Krzysztof B. Beć
- CCB-Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, 6020 Innsbruck, Austria; (J.G.); (C.W.H.)
| | - Justyna Grabska
- CCB-Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, 6020 Innsbruck, Austria; (J.G.); (C.W.H.)
| | - Christian W. Huck
- CCB-Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, 6020 Innsbruck, Austria; (J.G.); (C.W.H.)
| | - Sylwester Mazurek
- Faculty of Chemistry, University of Wrocław, 50-383 Wrocław, Poland;
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Grabska J, Beć KB, Ozaki Y, Huck CW. Anharmonic DFT Study of Near-Infrared Spectra of Caffeine: Vibrational Analysis of the Second Overtones and Ternary Combinations. Molecules 2021; 26:molecules26175212. [PMID: 34500645 PMCID: PMC8433751 DOI: 10.3390/molecules26175212] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 08/23/2021] [Accepted: 08/24/2021] [Indexed: 11/16/2022] Open
Abstract
Anharmonic quantum chemical calculations were employed to simulate and interpret a near-infrared (NIR) spectrum of caffeine. First and second overtones, as well as binary and ternary combination bands, were obtained, accurately reproducing the lineshape of the experimental spectrum in the region of 10,000–4000 cm−1 (1000–2500 nm). The calculations enabled performing a detailed analysis of NIR spectra of caffeine, including weak bands due to the second overtones and ternary combinations. A highly convoluted nature of NIR spectrum of caffeine was unveiled, with numerous overlapping bands found beneath the observed spectral lineshape. To properly reflect that intrinsic complexity, the band assignments were provided in the form of heat maps presenting the contributions to the NIR spectrum from various kinds of vibrational transitions. These contributions were also quantitatively assessed in terms of the integral intensities. It was found that the combination bands provide the decisively dominant contributions to the NIR spectrum of caffeine. The first overtones gain significant importance between 6500–5500 cm−1, while the second overtones are meaningful in the higher wavenumber regions, particularly in the 10,000–7000 cm−1 region. The obtained detailed band assignments enabled deep interpretation of the absorption regions of caffeine identified in the literature as meaningful for analytical applications of NIR spectroscopy focused on quantitative analysis of caffeine content in drugs and natural products.
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Affiliation(s)
- Justyna Grabska
- CCB—Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, 6020 Innsbruck, Austria; (K.B.B.); (C.W.H.)
- Correspondence:
| | - Krzysztof B. Beć
- CCB—Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, 6020 Innsbruck, Austria; (K.B.B.); (C.W.H.)
| | - Yukihiro Ozaki
- School of Biological and Environmental Sciences, Kwansei Gakuin University, Sanda 669-1337, Hyogo, Japan;
- Toyota Physical and Chemical Research Institute, Yokomichi, Nagakute 480-1192, Aichi, Japan
| | - Christian W. Huck
- CCB—Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, 6020 Innsbruck, Austria; (K.B.B.); (C.W.H.)
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Ozaki Y, Beć KB, Morisawa Y, Yamamoto S, Tanabe I, Huck CW, Hofer TS. Advances, challenges and perspectives of quantum chemical approaches in molecular spectroscopy of the condensed phase. Chem Soc Rev 2021; 50:10917-10954. [PMID: 34382961 DOI: 10.1039/d0cs01602k] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The purpose of this review is to demonstrate advances, challenges and perspectives of quantum chemical approaches in molecular spectroscopy of the condensed phase. Molecular spectroscopy, particularly vibrational spectroscopy and electronic spectroscopy, has been used extensively for a wide range of areas of chemical sciences and materials science as well as nano- and biosciences because it provides valuable information about structure, functions, and reactions of molecules. In the meantime, quantum chemical approaches play crucial roles in the spectral analysis. They also yield important knowledge about molecular and electronic structures as well as electronic transitions. The combination of spectroscopic approaches and quantum chemical calculations is a powerful tool for science, in general. Thus, our article, which treats various spectroscopy and quantum chemical approaches, should have strong implications in the wider scientific community. This review covers a wide area of molecular spectroscopy from far-ultraviolet (FUV, 120-200 nm) to far-infrared (FIR, 400-10 cm-1)/terahertz and Raman spectroscopy. As quantum chemical approaches, we introduce several anharmonic approaches such as vibrational self-consistent field (VSCF) and the combination of periodic harmonic calculations with anharmonic corrections based on finite models, grid-based techniques like the Numerov approach, the Cartesian coordinate tensor transfer (CCT) method, Symmetry-Adapted Cluster Configuration-Interaction (SAC-CI), and the ZINDO (Semi-empirical calculations at Zerner's Intermediate Neglect of Differential Overlap). One can use anharmonic approaches and grid-based approaches for both infrared (IR) and near-infrared (NIR) spectroscopy, while CCT methods are employed for Raman, Raman optical activity (ROA), FIR/terahertz and low-frequency Raman spectroscopy. Therefore, this review overviews cross relations between molecular spectroscopy and quantum chemical approaches, and provides various kinds of close-reality advanced spectral simulation for condensed phases.
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Affiliation(s)
- Yukihiro Ozaki
- School of Biological and Environmental Sciences, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan. and Toyota Physical and Chemical Research Institute, Yokomichi, Nagakute, Aichi 480-1192, Japan
| | - Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80/82, 6020 Innsbruck, Austria
| | - Yusuke Morisawa
- Department of Chemistry, School of Science and Engineering, Kindai University, Kowakae, Higashi-Osaka, Osaka 577-8502, Japan
| | - Shigeki Yamamoto
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Ichiro Tanabe
- Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, University of Innsbruck, Innrain 80/82, 6020 Innsbruck, Austria
| | - Thomas S Hofer
- Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80-82, A6020 Innsbruck, Austria
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Vibrational intensities and anharmonicity in MIR, NIR and Raman spectra of liquid CHCl3, CDCl3, CHBr3 and CDBr3: Spectroscopic and theoretical study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116277] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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12
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Beć KB, Grabska J, Huck CW. Current and future research directions in computer-aided near-infrared spectroscopy: A perspective. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 254:119625. [PMID: 33706116 DOI: 10.1016/j.saa.2021.119625] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 02/09/2021] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
The present review aims to draw a perspective on the vibrational spectroscopy combined with the tools of computational chemistry. This includes an overview of the accomplishments made so far, the assessment of the present development trends and the prospects for continuing these advances. State-of-the-art methods, current challenges and the expected future advances are evaluated from the point-of-view of the practical application in vibrational spectroscopy. A special attention is given to near-infrared (NIR) spectroscopy, which occupies a distinct position among the techniques of vibrational spectroscopy. As the result of intrinsically complex spectra, reliance on the anharmonicity as well as keen interest given to complex materials, NIR spectroscopy may particularly benefit from computational chemistry. The present key limitations hindering development of NIR spectroscopy are identified; these constitute primarily the limit in the treatable system size and the inability to effectively include chemical matrix effects. Given the expanding role of NIR spectroscopy in science and industry, lifting these limitations would directly enhance the general potential of this technique.
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Affiliation(s)
- Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria
| | - Justyna Grabska
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria
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13
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Singh S, Czarnecki MA. How much anharmonicity is in vibrational spectra of CH 3I and CD 3I? SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 248:119176. [PMID: 33257247 DOI: 10.1016/j.saa.2020.119176] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 10/29/2020] [Accepted: 11/01/2020] [Indexed: 06/12/2023]
Abstract
This work presents new experimental and theoretical insights on vibrational spectra of CH3I and CD3I in the liquid phase. For the first time, we provided the contributions from different vibrational modes to mid-infrared (MIR) and near-infrared (NIR) spectra and estimated the extent of anharmonicity in the MIR region. Direct comparison of the intensities from ATR-IR and NIR transmission spectra was possible due to normalization of ATR-IR spectra. As a reference for normalization, we applied the area of the νs(CH3)/νs(CD3) band recorded in transmission mode. Our results show that the corresponding vibrational modes of CH3I and CD3I have similar contributions to the total intensity (MIR + NIR), however, these contributions are distributed in a different way between MIR and NIR regions. As expected, most of intensity in MIR spectra originates from the fundamental transitions (>90%). The fundamental bands together with the first overtones and the binary combinations contribute to more than 99% of MIR intensity for both compounds. Therefore, reliable reconstruction of MIR spectra can be achieved by considering only these vibrational modes. On the other hand, accurate simulation of NIR spectra requires including the higher-order transitions. In the case of CD3I, the fourth-order transitions contribute to 12.7% of NIR intensity. The contributions from NIR region are significantly smaller than those from MIR range and were estimated to be 6.7% for CH3I and 2.3% for CD3I. The theoretical calculations provide a reasonable estimation of the total contribution from the fundamental bands. Yet, the calculated contributions from the anharmonic transitions are different from those obtained from the experimental data. MIR spectra of CH3I and CD3I reveal an unexpected increase in the intensity of some overtones and combination bands indicating the presence of Fermi resonances. These resonances are responsible for differences in contributions from the first overtones and binary combinations between CH3I and CD3I.
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Affiliation(s)
- Swapnil Singh
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
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Ozaki Y. Infrared Spectroscopy-Mid-infrared, Near-infrared, and Far-infrared/Terahertz Spectroscopy. ANAL SCI 2021; 37:1193-1212. [PMID: 33612556 DOI: 10.2116/analsci.20r008] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
This article aims to overview infrared (IR) spectroscopy. Simultaneously, it outlines mid-infrared (MIR), near-infrared (NIR), and far-infrared (FIR) or terahertz (THz) spectroscopy separately, and compares them in terms of principles, characteristics, advantages, and applications. MIR spectroscopy is the central spectroscopic technique in the IR region, and is mainly concerned with the fundamentals of molecular vibrations. NIR spectroscopy incorporates both electronic and vibrational spectroscopy; however, in this review, I have chiefly discussed vibrational NIR spectroscopy, where bands due to overtones and combination modes appear. FIR or THz spectroscopy contains both vibrational and rotational spectroscopy. However, only vibrational FIR or THz spectroscopy has been discussed in this review. These three spectroscopy cover wide areas in their applications, making it rather difficult to describe these various topics simultaneously. Hence, I have selected three key topics: hydrogen bond studies, applications of quantum chemical calculations, and imaging. The perspective of the three spectroscopy has been discussed in the last section.
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Affiliation(s)
- Yukihiro Ozaki
- School of Science and Technology, Kwansei Gakuin University.,Toyota Physical and Chemical Research Institute
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Stuppner S, Mayr S, Beganovic A, Beć K, Grabska J, Aufschnaiter U, Groeneveld M, Rainer M, Jakschitz T, Bonn GK, Huck CW. Near-Infrared Spectroscopy as a Rapid Screening Method for the Determination of Total Anthocyanin Content in Sambucus Fructus. SENSORS (BASEL, SWITZERLAND) 2020; 20:E4983. [PMID: 32887485 PMCID: PMC7506738 DOI: 10.3390/s20174983] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/26/2020] [Accepted: 08/28/2020] [Indexed: 12/26/2022]
Abstract
Elderberry (Sambucus nigra L., fructus) is a very potent herbal drug, deriving from traditional European medicine (TEM). Ripe elderberries are rich in anthocyanins, flavonols, flavonol esters, flavonol glycosides, lectins, essential oils, unsaturated fatty acids and vitamins. Nevertheless, unripe elderflower fruits contain a certain amount of sambunigrin, a toxic cyanogenic glycoside, whose concentration decreases in the ripening process. Therefore, quality assurance must be carried out. The standard method described in literature is the photometric determination (pH-differential method) of the total anthocyanin content (TAC) that is the highest when the berries are ripe. The drawback of the pH-differential method is the extensive sample preparation and the low accuracy of the method. Therefore, the goal of this publication was to develop a fast non invasive near-infrared (NIR) method for the determination of TAC in whole berries. TAC of elderberries was measured using pH-differentiation method where TAC values of 632.87 mg/kg to 4342.01 mg/kg were measured. Additionally, cyanidin-3-O-glucoside, cyanidin-3-O-sambubioside and cyanidin-3-O-sambubioside-5-O-glucoside which represent more than 98% of TAC in elderberry were quantified using ultra high performance liquid chromatography-multiple wavelength detection-ultra high resolution-quadrupole-time of flight-mass spectrometry (UHPLC-MWD-UHR-Q-TOF-MS) and their sum parameter was determined, ranging between 499.43 mg/kg and 8199.07 mg/kg. Using those two methods as reference, whole elderberries were investigated by NIR spectroscopy with the Büchi NIRFlex N-500 benchtop spectrometer. According to the constructed partial least squares regression (PLSR) models the performance was as follows: a relative standard deviation (RSDPLSR) of 13.5% and root mean square error of calibration (RMSECV/RMSEC) of 1.31 for pH-differentiation reference and a RSDPLSR of 12.9% and RMSECV/RMSEC of 1.28 for the HPLC reference method. In this study, we confirm that it is possible to perform a NIR screening for TAC in whole elderberries. Using quantum chemical calculations, we obtained detailed NIR band assignments of the analyzed compounds and interpreted the wavenumber regions established in PLSR models as meaningful for anthocyanin content. The NIR measurement turned out to be a fast and cost-efficient alternative for the determination of TAC compared to pH-differential method and UHPLC-MWD-UHR-Q-TOF-MS. Due to the benefit of no sample preparation and extraction the technology can be considered as sustainable green technology. With the above mentioned inversely proportional ratio of TAC to total amount of toxic cyanogenic glycosides, NIR proves to be a reliable screening method for the ideal harvest time with maximal content of TAC and lowest content of cyanogenic glycosides in elderberry.
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Affiliation(s)
- Stefan Stuppner
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
- ADSI-Austrian Drug Screening Institute GmbH, Innrain 66A, 6020 Innsbruck, Austria;
| | - Sophia Mayr
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Anel Beganovic
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Krzysztof Beć
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Justyna Grabska
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Urban Aufschnaiter
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Magdalena Groeneveld
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Matthias Rainer
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
| | - Thomas Jakschitz
- ADSI-Austrian Drug Screening Institute GmbH, Innrain 66A, 6020 Innsbruck, Austria;
| | - Günther K. Bonn
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
- ADSI-Austrian Drug Screening Institute GmbH, Innrain 66A, 6020 Innsbruck, Austria;
| | - Christian W. Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria; (S.S.); (S.M.); (A.B.); (K.B.); (J.G.); (U.A.); (M.G.); (M.R.); (G.K.B.)
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Beć KB, Grabska J, Huck CW, Czarnecki MA. Effect of conformational isomerism on NIR spectra of ethanol isotopologues. Spectroscopic and anharmonic DFT study. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113271] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Yao F, Gong N, Fang W, Men Z. Spectroscopic evidence of a particular intermolecular interaction in iodomethane–ethanol mixtures: the cooperative effect of halogen bonding, hydrogen bonding, and the solvent effect. Phys Chem Chem Phys 2020; 22:5702-5710. [DOI: 10.1039/c9cp05886a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The particular intermolecular interaction of an iodomethane–ethanol mixture is revealed by NIR, Raman, DFT calculation, and 2D correlation analysis.
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Affiliation(s)
- Fei Yao
- School of Science, Changchun University of Science and Technology
- Changchun
- China
| | - Nan Gong
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory
- College of Physics
- Jilin University
- Changchun 130012
- China
| | - Wenhui Fang
- School of Science, Changchun University of Science and Technology
- Changchun
- China
| | - Zhiwei Men
- Coherent Light and Atomic and Molecular Spectroscopy Laboratory
- College of Physics
- Jilin University
- Changchun 130012
- China
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18
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Katsu S, Ito S, Yoshimura N, Takayanagi M. Variation in Near-Infrared Spectra of Water Containing Polyhydric Alcohol. J SOLUTION CHEM 2019. [DOI: 10.1007/s10953-019-00928-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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19
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Beć KB, Grabska J, Ozaki Y, Czarnecki MA, Huck CW. Simulated NIR spectra as sensitive markers of the structure and interactions in nucleobases. Sci Rep 2019; 9:17398. [PMID: 31758033 PMCID: PMC6874539 DOI: 10.1038/s41598-019-53827-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Accepted: 10/11/2019] [Indexed: 11/16/2022] Open
Abstract
Near-infrared (near-IR; NIR) spectroscopy is continuously advancing in biophysical and biochemical fields of investigation. For instance, recent progresses in NIR hyperspectral imaging of biological systems may be noted. However, interpretation of NIR bands for biological samples is difficult and creates a considerable barrier in exploring the full potential of NIR spectroscopy in bioscience. For this reason, we carried out a systematic study of NIR spectra of adenine, cytosine, guanine, and thymine in polycrystalline state. Interpretation of NIR spectra of these nucleobases was supported by anharmonic vibrational analysis using Deperturbed Vibrational Second-Order Perturbation Theory (DVPT2). A number of molecular models of nucleobases was applied to study the effect of the inter-molecular interactions on the NIR spectra. The accuracy of simulated NIR spectra appears to depend on the intra-layer interactions; in contrast, the inter-layer interactions are less influential. The best results were achieved by combining the simulated spectra of monomers and dimers. It is of particular note that in-plane deformation bands are far more populated than out-of-plane ones and the importance of ring modes is relatively small. This trend is in contrast to that observed in mid-IR region. As shown, the local, short-range chemical neighborhood of nucleobase molecules influence their NIR spectra more considerably. This suggests that NIR spectra are more sensitive probe of the nucleobase pairing than mid-IR ones. The obtained results allow, for the first time, to construct a frequency correlation table for NIR spectra of purines and pyrimidines.
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Affiliation(s)
- Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, CCB-Center for Chemistry and Biomedicine, 6020, Innsbruck, Austria.
| | - Justyna Grabska
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, CCB-Center for Chemistry and Biomedicine, 6020, Innsbruck, Austria
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo, 669-1337, Japan
| | - Mirosław A Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383, Wrocław, Poland
| | - Christan W Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80/82, CCB-Center for Chemistry and Biomedicine, 6020, Innsbruck, Austria
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Beć KB, Grabska J, Czarnecki MA, Huck CW, Wójcik MJ, Nakajima T, Ozaki Y. IR Spectra of Crystalline Nucleobases: Combination of Periodic Harmonic Calculations with Anharmonic Corrections Based on Finite Models. J Phys Chem B 2019; 123:10001-10013. [DOI: 10.1021/acs.jpcb.9b06285] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Krzysztof B. Beć
- Institute of Analytical Chemistry, University of Innsbruck, A6020 Innsbruck, Austria
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Justyna Grabska
- Institute of Analytical Chemistry, University of Innsbruck, A6020 Innsbruck, Austria
| | - Mirosław A. Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Christian W. Huck
- Institute of Analytical Chemistry, University of Innsbruck, A6020 Innsbruck, Austria
| | - Marek J. Wójcik
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland
| | - Takahito Nakajima
- RIKEN Center for Computational Science, 7-1-26, Minatojima-minami-machi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Spectra-Structure Correlations in Isotopomers of Ethanol (CX 3CX 2OX; X = H, D): Combined Near-Infrared and Anharmonic Computational Study. Molecules 2019; 24:molecules24112189. [PMID: 31212669 PMCID: PMC6600318 DOI: 10.3390/molecules24112189] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 06/03/2019] [Accepted: 06/08/2019] [Indexed: 11/21/2022] Open
Abstract
The effect of isotopic substitution on near-infrared (NIR) spectra has not been studied in detail. With an exception of few major bands, it is difficult to follow the spectral changes due to complexity of NIR spectra. Recent progress in anharmonic quantum mechanical calculations allows for accurate reconstruction of NIR spectra. Taking this opportunity, we carried out a systematic study of NIR spectra of six isotopomers of ethanol (CX3CX2OX; X = H, D). Besides, we calculated the theoretical spectra of two other isotopomers (CH3CD2OD and CD3CH2OD) for which the experimental spectra are not available. The anharmonic calculations were based on generalized vibrational second-order perturbation theory (GVPT2) at DFT and MP2 levels with several basis sets. We compared the accuracy and efficiency of various computational methods. It appears that the best results were obtained with B2PLYP-GD3BJ/def2-TZVP//CPCM approach. Our simulations included the first and second overtones, as well as binary and ternary combinations bands. This way, we reliably reproduced even minor bands in the spectra of diluted samples (0.1 M in CCl4). On this basis, the effect of isotopic substitution on NIR spectra of ethanol was accurately reproduced and comprehensively explained.
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Beć KB, Karczmit D, Kwaśniewicz M, Ozaki Y, Czarnecki MA. Overtones of νC≡N Vibration as a Probe of Structure of Liquid CH3CN, CD3CN, and CCl3CN: Combined Infrared, Near-Infrared, and Raman Spectroscopic Studies with Anharmonic Density Functional Theory Calculations. J Phys Chem A 2019; 123:4431-4442. [DOI: 10.1021/acs.jpca.9b02170] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Krzysztof Bernard Beć
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Daniel Karczmit
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Michał Kwaśniewicz
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Babaei Rouchi M, Khanmohammadi Khorrami M, Garmarudi AB, de la Guardia M. Application of infrared spectroscopy as Process Analytics Technology (PAT) approach in biodiesel production process utilizing Multivariate Curve Resolution Alternative Least Square (MCR-ALS). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 213:347-353. [PMID: 30716646 DOI: 10.1016/j.saa.2019.01.046] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Revised: 11/24/2018] [Accepted: 01/15/2019] [Indexed: 06/09/2023]
Abstract
Process Analytical Technology means at-line collection of analytical information from the process when the reaction is in progress. Obtained information enables process engineers to better control the Critical Process Parameters and direct the reaction to desirable routs. Near-infrared spectroscopy due to its analytical features, as well as the high capability of automation, versatile sampling and spectral acquisition methods is a useful tool in process monitoring when coupled to chemometrics. The Multiple Scatter Correction preprocessing technique and Alternative Least Square method can extract spectral and concentration information of a reaction mixture simultaneously, were employed pairing with fiber optic Near-Infrared spectroscopy in 1000-2250 nm spectral region was employed to extract the analytical information from the biodiesel production process. The obtained output demonstrated appropriate results about the concentration and type of components during the process. The kinetics of the reaction was also studied using the obtained results and showed a three-stage kinetics with different rates.
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Affiliation(s)
- Mohammad Babaei Rouchi
- Chemistry Department, Faculty of Science, Imam Khomeini International University, Qazvin, Iran.
| | | | - Amir Bagheri Garmarudi
- Chemistry Department, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| | - Miguel de la Guardia
- Department of Analytical Chemistry, University of Valencia, 50 Dr. Moliner St., 46100 Burjassot, Valencia, Spain
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Distinct Difference in Sensitivity of NIR vs. IR Bands of Melamine to Inter-Molecular Interactions with Impact on Analytical Spectroscopy Explained by Anharmonic Quantum Mechanical Study. Molecules 2019; 24:molecules24071402. [PMID: 30974741 PMCID: PMC6479474 DOI: 10.3390/molecules24071402] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 04/05/2019] [Accepted: 04/07/2019] [Indexed: 11/17/2022] Open
Abstract
Melamine (IUPAC: 1,3,5-Triazine-2,4,6-triamine) attracts high attention in analytical vibrational spectroscopy due to its misuse as a food adulterant. Vibrational spectroscopy [infrared (IR) and Raman and near-infrared (NIR) spectroscopy] is a major quality control tool in the detection and quantification of melamine content. The physical background for the measured spectra is not interpreted in analytical spectroscopy using chemometrics. In contrast, quantum mechanical calculations are capable of providing deep and independent insights therein. So far, the NIR region of crystalline melamine has not been studied by quantum mechanical calculations, while the investigations of its IR spectra have remained limited. In the present work, we employed fully anharmonic calculation of the NIR spectrum of melamine based on finite models, and also performed IR spectral simulation by using an infinite crystal model—periodic in three dimensions. This yielded detailed and unambiguous NIR band assignments and revised the previously known IR band assignments. We found that the out-of-plane fundamental transitions, which are essential in the IR region, are markedly more sensitive to out-of-plane inter-molecular interactions of melamine than NIR transitions. Proper description of the chemical surrounding of the molecule of melamine is more important than the anharmonicity of its vibrations. In contrast, the NIR bands mostly arise from in-plane vibrations, and remain surprisingly insensitive to the chemical environment. These findings explain previous observations that were reported in IR and NIR analytical studies of melamine.
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Ozaki Y. Recent Advances in Molecular Spectroscopy of Electronic and Vibrational Transitions in Condensed Phase and Its Application to Chemistry. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2019. [DOI: 10.1246/bcsj.20180319] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Yukihiro Ozaki
- School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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26
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Beć KB, Huck CW. Breakthrough Potential in Near-Infrared Spectroscopy: Spectra Simulation. A Review of Recent Developments. Front Chem 2019; 7:48. [PMID: 30854368 PMCID: PMC6396078 DOI: 10.3389/fchem.2019.00048] [Citation(s) in RCA: 94] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 01/18/2019] [Indexed: 11/29/2022] Open
Abstract
Near-infrared (12,500–4,000 cm−1; 800–2,500 nm) spectroscopy is the hallmark for one of the most rapidly advancing analytical techniques over the last few decades. Although it is mainly recognized as an analytical tool, near-infrared spectroscopy has also contributed significantly to physical chemistry, e.g., by delivering invaluable data on the anharmonic nature of molecular vibrations or peculiarities of intermolecular interactions. In all these contexts, a major barrier in the form of an intrinsic complexity of near-infrared spectra has been encountered. A large number of overlapping vibrational contributions influenced by anharmonic effects create complex patterns of spectral dependencies, in many cases hindering our comprehension of near-infrared spectra. Quantum mechanical calculations commonly serve as a major support to infrared and Raman studies; conversely, near-infrared spectroscopy has long been hindered in this regard due to practical limitations. Advances in anharmonic theories in hyphenation with ever-growing computer technology have enabled feasible theoretical near-infrared spectroscopy in recent times. Accordingly, a growing number of quantum mechanical investigations aimed at near-infrared region has been witnessed. The present review article summarizes these most recent accomplishments in the emerging field. Applications of generalized approaches, such as vibrational self-consistent field and vibrational second order perturbation theories as well as their derivatives, and dense grid-based studies of vibrational potential, are overviewed. Basic and applied studies are discussed, with special attention paid to the ones which aim at improving analytical spectroscopy. A remarkable potential arises from the growing applicability of anharmonic computations to solving the problems which arise in both basic and analytical near-infrared spectroscopy. This review highlights an increased value of quantum mechanical calculations to near-infrared spectroscopy in relation to other kinds of vibrational spectroscopy.
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Affiliation(s)
- Krzysztof B Beć
- Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innsbruck, Austria
| | - Christian W Huck
- Center for Chemistry and Biomedicine, Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innsbruck, Austria
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27
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Hull K, Soliday RM, Sumner I, Raston PL. Comment on "Revisiting the formation of cyclic clusters in liquid ethanol" [J. Chem. Phys. 144, 154302 (2016)]. J Chem Phys 2019; 150:057101. [PMID: 30736695 DOI: 10.1063/1.5047417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Killian Hull
- Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807, USA
| | - Rebekah M Soliday
- Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807, USA
| | - Isaiah Sumner
- Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807, USA
| | - Paul L Raston
- Department of Chemistry and Biochemistry, James Madison University, Harrisonburg, Virginia 22807, USA
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28
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Troya D. Reactivity Consequences of Conformational Isomerism in 1-Propanol. J Phys Chem A 2019; 123:1044-1050. [DOI: 10.1021/acs.jpca.8b11956] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Diego Troya
- Department of Chemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States
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29
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Jintao X, Yongli S, Liming Y, Quanwei Y, Chunyan L, Xingyi C, Yun J. Near-infrared spectroscopy for rapid and simultaneous determination of five main active components in rhubarb of different geographical origins and processing. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 205:419-427. [PMID: 30048943 DOI: 10.1016/j.saa.2018.07.055] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Revised: 07/15/2018] [Accepted: 07/17/2018] [Indexed: 06/08/2023]
Abstract
Rhubarb (Rhei Radix et Rhizoma) is a classic herbal laxative medicine in Europe and a very famous natural medicine in Asia, especially in China. In this study, near-infrared spectroscopy (NIRS) was first used for rapid and simultaneous analysis of five main active components (chrysophanol, aloe-emodin, rhein, emodin and physcion) in rhubarb of 6 geographical origins, processing and spurious samples. A total of 124 samples (73 raw, 40 processed and 11 spurious samples) were collected. With the reference values determined by HPLC, two calibration strategies, partial least squares (PLS) as a linear regression method and artificial neural networks (ANN) as a non-linear regression method, were studied. For the PLS strategy, 11 spectral pre-processing methods, 5 spectral regions and different latent variables (LVs) were systematically compared, while 3 spectral pre-processing methods and 5 ANN algorithms were studied for the ANN strategy. The results indicated that PLS was more suitable for the analysis of chrysophanol, aloe-emodin, emodin and physcion, whereas ANN was better for rhein. For the optimal NIR models of chrysophanol, aloe-emodin, rhein, emodin and physcion, the correlation coefficients of the calibration set (Rcal) were 0.9916, 0.9762, 0.9839, 0.9794 and 0.9800, respectively; the correlation coefficients of the prediction set (Rpre) were 0.9888, 0.9359, 0.9410, 0.9805 and 0.9785, respectively; the root mean square error of validation (RMSEP) were 0.0402, 0.0197, 0.0593, 0.0133 and 0.0192, respectively. Subsequently, the optimal NIR models were used to study the effects of geographical regions and processing, and identify the spurious rhubarb. Collectively, NIRS may be a well-acceptable method for quality evaluation of rhubarb and other traditional Chinese medicine (TCM).
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Affiliation(s)
- Xue Jintao
- School of Pharmacy, Xinxiang Medical University, Xinxiang 453002, Henan Province, PR China
| | - Shi Yongli
- School of Pharmacy, Xinxiang Medical University, Xinxiang 453002, Henan Province, PR China
| | - Ye Liming
- West China School of Pharmacy, Sichuan University, Chengdu 610041, Sichuan Province, PR China.
| | - Yang Quanwei
- Department of Pharmacy, Wu Han No. 1 Hospital, Wuhan 430022, Hubei Province, PR China
| | - Li Chunyan
- School of Pharmacy, Xinxiang Medical University, Xinxiang 453002, Henan Province, PR China; Sanquan College of Xinxiang Medical University, Xinxiang 453002, Henan Province, PR China
| | - Chen Xingyi
- West China School of Pharmacy, Sichuan University, Chengdu 610041, Sichuan Province, PR China
| | - Jing Yun
- School of Pharmacy, Xinxiang Medical University, Xinxiang 453002, Henan Province, PR China.
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30
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Li T, Su C. Authenticity identification and classification of Rhodiola species in traditional Tibetan medicine based on Fourier transform near-infrared spectroscopy and chemometrics analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 204:131-140. [PMID: 29925045 DOI: 10.1016/j.saa.2018.06.004] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 05/29/2018] [Accepted: 06/01/2018] [Indexed: 06/08/2023]
Abstract
Rhodiola is an increasingly widely used traditional Tibetan medicine and traditional Chinese medicine in China. The composition profiles of bioactive compounds are somewhat jagged according to different species, which makes it crucial to identify authentic Rhodiola species accurately so as to ensure clinical application of Rhodiola. In this paper, a nondestructive, rapid, and efficient method in classification of Rhodiola was developed by Fourier transform near-infrared (FT-NIR) spectroscopy combined with chemometrics analysis. A total of 160 batches of raw spectra were obtained from four different species of Rhodiola by FT-NIR, such as Rhodiola crenulata, Rhodiola fastigiata, Rhodiola kirilowii, and Rhodiola brevipetiolata. After excluding the outliers, different performances of 3 sample dividing methods, 12 spectral preprocessing methods, 2 wavelength selection methods, and 2 modeling evaluation methods were compared. The results indicated that this combination was superior than others in the authenticity identification analysis, which was FT-NIR combined with sample set partitioning based on joint x-y distances (SPXY), standard normal variate transformation (SNV) + Norris-Williams (NW) + 2nd derivative, competitive adaptive reweighted sampling (CARS), and kernel extreme learning machine (KELM). The accuracy (ACCU), sensitivity (SENS), and specificity (SPEC) of the optimal model were all 1, which showed that this combination of FT-NIR and chemometrics methods had the optimal authenticity identification performance. The classification performance of the partial least squares discriminant analysis (PLS-DA) model was slightly lower than KELM model, and PLS-DA model results were ACCU = 0.97, SENS = 0.93, and SPEC = 0.98, respectively. It can be concluded that FT-NIR combined with chemometrics analysis has great potential in authenticity identification and classification of Rhodiola, which can provide a valuable reference for the safety and effectiveness of clinical application of Rhodiola.
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Affiliation(s)
- Tao Li
- Department of Natural Medicine, West China School of Pharmacy, Sichuan University, and Key Laboratory of Drug Targeting, Ministry of Education, No. 17, Section 3, Ren-Min-Nan-Lu Road, Chengdu, Sichuan 610041, PR China.
| | - Chen Su
- Department of Natural Medicine, West China School of Pharmacy, Sichuan University, and Key Laboratory of Drug Targeting, Ministry of Education, No. 17, Section 3, Ren-Min-Nan-Lu Road, Chengdu, Sichuan 610041, PR China
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31
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NIR spectra simulation of thymol for better understanding of the spectra forming factors, phase and concentration effects and PLS regression features. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.08.011] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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32
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Grabska J, Beć KB, Ishigaki M, Huck CW, Ozaki Y. NIR Spectra Simulations by Anharmonic DFT-Saturated and Unsaturated Long-Chain Fatty Acids. J Phys Chem B 2018; 122:6931-6944. [DOI: 10.1021/acs.jpcb.8b04862] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justyna Grabska
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Krzysztof B. Beć
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Mika Ishigaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Christian W. Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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33
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Futami Y, Minamoto C, Kudoh S. Anharmonic calculations of frequencies and intensities of OH stretching vibrations of (R)-1,3-butanediol conformers in the fundamentals and first overtones by density functional theory. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:251-254. [PMID: 29501370 DOI: 10.1016/j.saa.2018.02.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 02/05/2018] [Accepted: 02/07/2018] [Indexed: 06/08/2023]
Abstract
The frequencies and absorption intensities of the five kinds of conformers of 1,3-butanediol with the same carbon skeleton (GG') were calculated by anharmonic calculation for the fundamentals and first overtones of OH stretching vibrations. The four kinds of conformers form intramolecular hydrogen bonds and one conformer did not. Intramolecular hydrogen bond formation shifted the frequency of fundamental and first overtone of H-bonding OH stretching vibration to the lower frequency. The absorption intensities of the fundamentals as well as the vibrational anharmonicities increased upon hydrogen bond formation, while the intensities of first overtones decreased. The differences of conformers were clearly seen in the frequencies of the first overtones of free OH.
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Affiliation(s)
- Yoshisuke Futami
- Department of Biological and Chemical Systems Engineering, National Institute of Technology, Kumamoto College, Yatsushiro, Kumamoto 866-8501, Japan.
| | - Chihiro Minamoto
- Department of Applied Chemistry and Biotechnology, National Institute of Technology, Niihama College, Niihama, Ehime 792-8580, Japan
| | - Satoshi Kudoh
- College of Engineering, Shibaura Institute of Technology, Saitama, Saitama 337-8570, Japan
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34
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Beć KB, Grabska J, Czarnecki MA. Spectra-structure correlations in NIR region: Spectroscopic and anharmonic DFT study of n-hexanol, cyclohexanol and phenol. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:176-184. [PMID: 29402559 DOI: 10.1016/j.saa.2018.01.041] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Revised: 01/08/2018] [Accepted: 01/13/2018] [Indexed: 06/07/2023]
Abstract
We investigated near-infrared (7500-4000 cm-1) spectra of n-hexanol, cyclohexanol and phenol in CCl4 (0.2 M) by using anharmonic quantum calculations. These molecules represent three major kinds of alcohols; linear and cyclic aliphatic, and aromatic ones. Vibrational second-order perturbation theory (VPT2) was employed to calculate the first overtones and binary combination modes and to reproduce the experimental NIR spectra. The level of conformational flexibility of these three alcohols varies from one stable conformer of phenol through four conformers of cyclohexanol to few hundreds conformers in the case of n-hexanol. To take into account the most relevant conformational population of n-hexanol, a systematic conformational search was performed. Accurate reproduction of the experimental NIR spectra was achieved and detailed spectra-structure correlations were obtained for these three alcohols. VPT2 approach provides less reliable description of highly anharmonic modes, i.e. OH stretching. In the present work this limitation was manifested in erroneous results yielded by VPT2 for 2νOH mode of cyclohexanol. To study the anharmonicity of this mode we solved the corresponding time-independent Schrödinger equation based on a dense-grid probing of the relevant vibrational potential. These results allowed for significant improvement of the agreement between the calculated and experimental 2νOH band of cyclohexanol. Various important biomolecules include similar structural units to the systems investigated here. A detailed knowledge on spectral properties of these three types of alcohols is therefore essential for advancing our understanding of NIR spectroscopy of biomolecules.
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Affiliation(s)
- Krzysztof B Beć
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan.
| | - Justyna Grabska
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Mirosław A Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
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35
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Morisawa Y, Suga A. Effects of intermolecular interactions on absorption intensities of the fundamental and the first, second, and third overtones of OH stretching vibrations of methanol and t-butanol‑d 9 in n-hexane studied by visible/near-infrared/infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:121-125. [PMID: 29221935 DOI: 10.1016/j.saa.2017.11.059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 11/24/2017] [Accepted: 11/27/2017] [Indexed: 06/07/2023]
Abstract
Visible (Vis), near-infrared (NIR) and IR spectra in the 15,600-2500cm-1 region were measured for methanol, methanol-d3, and t-butanol-d9 in n-hexane to investigate effects of intermolecular interaction on absorption intensities of the fundamental and the first, second, and third overtones of their OH stretching vibrations. The relative area intensities of OH stretching bands of free and hydrogen-bonded species were plotted versus the vibrational quantum number using logarithm plots (V=1-4) for 0.5M methanol, 0.5M methanol‑d3, and 0.5M t-butanol-d9 in n-hexane. In the logarithm plots the relative intensities of free species yield a linear dependence irrespective of the solutes while those of hydrogen-bonded species deviate significantly from the linearity. The observed results suggest that the modifications in dipole moment functions of the OH bond induced by the formation of the hydrogen bondings change transient dipole moment, leading to the deviations of the dependences of relative absorption intensities on the vibrational quantum number from the linearity.
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Affiliation(s)
- Yusuke Morisawa
- Department of Chemistry, School of Science and Engineering, Kindai University, Higashi-Osaka, Osaka, Japan.
| | - Arisa Suga
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Gakuen, Sanda, Hyogo 669-1337, Japan
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36
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Beganović A, Beć KB, Henn R, Huck CW. Handling of uncertainty due to interference fringe in FT-NIR transmittance spectroscopy - Performance comparison of interference elimination techniques using glucose-water system. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:208-215. [PMID: 29433857 DOI: 10.1016/j.saa.2018.01.069] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 01/23/2018] [Accepted: 01/25/2018] [Indexed: 06/08/2023]
Abstract
The applicability of two elimination techniques for interferences occurring in measurements with cells of short pathlength using Fourier transform near-infrared (FT-NIR) spectroscopy was evaluated. Due to the growing interest in the field of vibrational spectroscopy in aqueous biological fluids (e.g. glucose in blood), aqueous solutions of d-(+)-glucose were prepared and split into a calibration set and an independent validation set. All samples were measured with two FT-NIR spectrometers at various spectral resolutions. Moving average smoothing (MAS) and fast Fourier transform filter (FFT filter) were applied to the interference affected FT-NIR spectra in order to eliminate the interference pattern. After data pre-treatment, partial least squares regression (PLSR) models using different NIR regions were constructed using untreated (interference affected) spectra and spectra treated with MAS and FFT filter. The prediction of the independent validation set revealed information about the performance of the utilized interference elimination techniques, as well as the different NIR regions. The results showed that the combination band of water at approx. 5200 cm-1 is of great importance since its performance was superior to the one of the so-called first overtone of water at approx. 6800 cm-1. Furthermore, this work demonstrated that MAS and FFT filter are fast and easy-to-use techniques for the elimination of interference fringes in FT-NIR transmittance spectroscopy.
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Affiliation(s)
- Anel Beganović
- Institute of Analytical Chemistry and Radiochemistry, CCB - Center for Chemistry and Biomedicine, Innrain 80/82, Innsbruck 6020, Austria
| | - Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, CCB - Center for Chemistry and Biomedicine, Innrain 80/82, Innsbruck 6020, Austria; Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Raphael Henn
- Institute of Analytical Chemistry and Radiochemistry, CCB - Center for Chemistry and Biomedicine, Innrain 80/82, Innsbruck 6020, Austria
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, CCB - Center for Chemistry and Biomedicine, Innrain 80/82, Innsbruck 6020, Austria.
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37
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Wrzeszcz W, Mazurek S, Szostak R, Tomza P, Czarnecki MA. Microheterogeneity in CH 3OH/CD 3OH mixture. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 188:349-354. [PMID: 28753528 DOI: 10.1016/j.saa.2017.07.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Revised: 07/04/2017] [Accepted: 07/18/2017] [Indexed: 06/07/2023]
Abstract
Recently, we demonstrated the presence of microheterogeneity in binary mixtures of unlike alcohols. [RSC Adv. 2016, 6, 37195-37202] The aim of this work was examination if this phenomenon occurs also in the mixture of very similar alcohols like CH3OH and CD3OH. Theoretical calculations suggest that the isotopic substitution in methyl group influences properties of the OH group. Hence, one can expect that this effect may lead to partial separation of CH3OH and CD3OH at a molecular level and it contributes to deviation from the ideal mixture. This work evidences that CH3OH/CD3OH mixture also deviates from the ideal one, but the extent of this deviation is much smaller as compared with the mixtures of other alcohols. It is of particular note that this deviation results mainly from the difference between the CH3 and CD3 groups, while the contribution from the OH groups is small. The structure of CH3OH/CD3OH mixture at a molecular level is similar to the structure of binary mixtures of other alcohols. The mixture is composed of the homoclusters of both alcohols and the mixed clusters. The homoclusters existing in the mixture are similar to those present in bulk alcohols. The highest population of the heteroclusters and the largest deviation from the ideal mixture were observed at equimolar mixture. Both the experimental and theoretical results reveal that in CH3OH/CD3OH mixture dominate the cyclic tetramers and larger clusters, while the population of the linear clusters is negligible. Though the extent and strength of hydrogen bonding in both alcohols are the same, the position and intensity of the 2ν(OH) band for CH3OH and CD3OH are different. We propose possible explanation of this observation.
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Affiliation(s)
- Władysław Wrzeszcz
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Sylwester Mazurek
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Roman Szostak
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Paweł Tomza
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Mirosław A Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland.
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38
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Vaskivskyi Y, Chernolevska Y, Doroshenko I, Doroshenko O, Pogorelov V. Cluster structure changes during melting of 1-decanol: FTIR study and DFT calculations. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.109] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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39
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Shao X, Cui X, Liu Y, Xia Z, Cai W. Understanding the Molecular Interaction in Solutions by Chemometric Resolution of Near−Infrared Spectra. ChemistrySelect 2017. [DOI: 10.1002/slct.201700939] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Xueguang Shao
- Xinjiang Laboratory of Native Medicinal and Edible Plant Resources Chemistry; College of Chemistry and Environmental Science; Kashgar University; Kashgar 844006 China
- Research Center for Analytical Sciences; College of Chemistry; Nankai University; Tianjin Key Laboratory of Biosensing and Molecular Recognition; State Key Laboratory of Medicinal Chemical Biology; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin); Tianjin 300071 China
| | - Xiaoyu Cui
- Research Center for Analytical Sciences; College of Chemistry; Nankai University; Tianjin Key Laboratory of Biosensing and Molecular Recognition; State Key Laboratory of Medicinal Chemical Biology; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin); Tianjin 300071 China
| | - Yan Liu
- Research Center for Analytical Sciences; College of Chemistry; Nankai University; Tianjin Key Laboratory of Biosensing and Molecular Recognition; State Key Laboratory of Medicinal Chemical Biology; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin); Tianjin 300071 China
| | - Zhenzhen Xia
- Research Center for Analytical Sciences; College of Chemistry; Nankai University; Tianjin Key Laboratory of Biosensing and Molecular Recognition; State Key Laboratory of Medicinal Chemical Biology; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin); Tianjin 300071 China
| | - Wensheng Cai
- Research Center for Analytical Sciences; College of Chemistry; Nankai University; Tianjin Key Laboratory of Biosensing and Molecular Recognition; State Key Laboratory of Medicinal Chemical Biology; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin); Tianjin 300071 China
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40
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Grabska J, Czarnecki MA, Beć KB, Ozaki Y. Spectroscopic and Quantum Mechanical Calculation Study of the Effect of Isotopic Substitution on NIR Spectra of Methanol. J Phys Chem A 2017; 121:7925-7936. [DOI: 10.1021/acs.jpca.7b08693] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Justyna Grabska
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Mirosław A. Czarnecki
- Faculty
of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Krzysztof B. Beć
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Grabska J, Beć KB, Ishigaki M, Wójcik MJ, Ozaki Y. Spectra-structure correlations of saturated and unsaturated medium-chain fatty acids. Near-infrared and anharmonic DFT study of hexanoic acid and sorbic acid. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 185:35-44. [PMID: 28535459 DOI: 10.1016/j.saa.2017.05.024] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2017] [Revised: 05/10/2017] [Accepted: 05/10/2017] [Indexed: 06/07/2023]
Abstract
Quantum chemical reproduction of entire NIR spectra is a new trend, enabled by contemporary advances in the anharmonic approaches. At the same time, recent increase of the importance of NIR spectroscopy of biological samples raises high demand for gaining deeper understanding of NIR spectra of biomolecules, i.e. fatty acids. In this work we investigate saturated and unsaturated medium-chain fatty acids, hexanoic acid and sorbic acid, in the near-infrared region. By employing fully anharmonic density functional theory (DFT) calculations we reproduce the experimental NIR spectra of these systems, including the highly specific spectral features corresponding to the dimerization of fatty acids. Broad range of concentration levels from 5·10-4M in CCl4 to pure samples are investigated. The major role of cyclic dimers can be evidenced for the vast majority of these samples. A highly specific NIR feature of fatty acids, the elevation of spectral baseline around 6500-4000cm-1, is being explained by the contributions of combination bands resulting from the vibrations of hydrogen-bonded OH groups in the cyclic dimers. Based on the high agreement between the calculated and experimental NIR spectra, a detailed NIR band assignments are proposed for hexanoic acid and sorbic acid. Subsequently, the correlations between the structure and NIR spectra are elucidated, emphasizing the regions in which clear and universal traces of specific bands corresponding to saturated and unsaturated alkyl chains can be established, thus demonstrating the wavenumber regions highly valuable for structural identifications.
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Affiliation(s)
- Justyna Grabska
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan; University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Krzysztof B Beć
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan.
| | - Mika Ishigaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Marek J Wójcik
- Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Grabska J, Ishigaki M, Beć KB, Wójcik MJ, Ozaki Y. Correlations between Structure and Near-Infrared Spectra of Saturated and Unsaturated Carboxylic Acids. Insight from Anharmonic Density Functional Theory Calculations. J Phys Chem A 2017; 121:3437-3451. [DOI: 10.1021/acs.jpca.7b02053] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Justyna Grabska
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
- Faculty
of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Mika Ishigaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Krzysztof B. Beć
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Marek J. Wójcik
- Faculty
of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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43
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Huck CW, Beć KB, Grabska J, Ozaki Y. Quantum chemical calculation of NIR spectra of practical materials. ACTA ACUST UNITED AC 2017. [DOI: 10.1177/0960336017695746] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In the third issue of the series on modern quantum chemical methods in the support role of NIR spectroscopy we continue to introduce the researchers from the field of experimental spectroscopy to practical aspects and applications of modern anharmonic theoretical approaches. The first two issues focused on explaining the necessary theoretical and practical background, allowing readers to get more familiar with the topic. An overview of recent literature reports highlighted the advantages stemming from using quantum chemical calculation in the support role to NIR spectroscopy. These deliberations were based on several cases of small- to medium-sized molecules. This part overviews the topic of applications of quantum theoretical methods to complex molecules with practical significance, which typically prove to be challenging objects for theoretical studies. An exemplary application of presented methodology to the case of Rosmarini folium biological samples is also examined here. The rosemary specific active compound, rosmarinic acid, is a relatively complex polyphenol with growing phytopharmaceutical importance, and therefore provides an excellent object of applied studies. The possibilities of combining the information stemming from quantum chemical calculation with the methods of advanced spectral data analysis, which are commonly used in experimental NIR spectroscopy (chemometrics, two-dimensional (2D) correlation spectra) are also overviewed. Again, these deliberations are based directly on the most recent reports published in the field.
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Affiliation(s)
- Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innsbruck, Austria
| | - Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innsbruck, Austria
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Japan
| | - Justyna Grabska
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innsbruck, Austria
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Japan
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Grabska J, Beć KB, Ozaki Y, Huck CW. Temperature Drift of Conformational Equilibria of Butyl Alcohols Studied by Near-Infrared Spectroscopy and Fully Anharmonic DFT. J Phys Chem A 2017; 121:1950-1961. [DOI: 10.1021/acs.jpca.7b00646] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Justyna Grabska
- Institute
of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
- Faculty
of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Krzysztof B. Beć
- Institute
of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Christian W. Huck
- Institute
of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
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Beć KB, Grabska J, Ozaki Y, Hawranek JP, Huck CW. Influence of Non-fundamental Modes on Mid-infrared Spectra: Anharmonic DFT Study of Aliphatic Ethers. J Phys Chem A 2017; 121:1412-1424. [DOI: 10.1021/acs.jpca.6b11734] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Krzysztof B. Beć
- Institute of Analytical
Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
- School
of Science
and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Justyna Grabska
- Institute of Analytical
Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Yukihiro Ozaki
- School
of Science
and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Jerzy P. Hawranek
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Christian W. Huck
- Institute of Analytical
Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 80-82, 6020 Innsbruck, Austria
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Kirchler CG, Pezzei CK, Beć KB, Mayr S, Ishigaki M, Ozaki Y, Huck CW. Critical evaluation of spectral information of benchtop vs. portable near-infrared spectrometers: quantum chemistry and two-dimensional correlation spectroscopy for a better understanding of PLS regression models of the rosmarinic acid content in Rosmarini folium. Analyst 2017; 142:455-464. [PMID: 27975094 DOI: 10.1039/c6an02439d] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2023]
Abstract
In the present work the performances of one benchtop and two different types of miniaturized near-infrared (NIR)-spectrometers were tested and compared for the first time by the determination of the rosmarinic acid (RA) content of dried and powdered Rosmarini folium. The recorded NIR spectra were utilized in hyphenation with multivariate data analysis (MVA) to calculate Partial Least Squares (PLS) regression models. Quality parameters obtained from Cross Validation (CV) revealed that the benchtop NIR-device "NIRFlex N-500 FT-NIR spectrometer" achieved the best result with a R2 of 0.91 and a RPD of 3.27. The miniaturized NIR-device "MicroNIR 2200 spectrometer" showed a satisfying calibration quality with a R2 of 0.84 and a RPD of 2.46. The miniaturized NIR-device "ThermoScientific microPHAZIR" with a R2 of 0.73 and a RPD of 1.88 was less precise and needs to be improved. The measured spectra of the different devices were additionally investigated by two-dimensional correlation spectroscopy (2D-COS) analysis, which supported the performed PLS regression models as well as identified the discrepancies for microPHAZIR and MicroNIR 2200 compared to NIRFlex N-500. With the aim to obtain a better understanding of the factors which determine the analyzed PLS regression models, the NIR spectrum of RA was reproduced through application of fully anharmonic quantum chemical calculation. A good agreement between the experimental and theoretical NIR spectra and detailed band assignments of RA were obtained in the 8000-4000 cm-1 wavenumber region. Subsequently, this enabled us to attribute the main influences in the regression coefficients plots. This study demonstrated that the performance of NIR spectroscopy with benchtop and miniaturized devices as a fast and non-invasive technique is able to replace time- and resource-consuming analytical tools. Referring to the developed application of the RA content quantification this work is especially interesting for the continuous growing phytopharmaceutical industry and its quality control. The results reveal the importance of monitoring the performances of available NIR-spectrometers in every analytical area.
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Affiliation(s)
- Christian G Kirchler
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
| | - Cornelia K Pezzei
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
| | - Krzysztof B Beć
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
| | - Sophia Mayr
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
| | - Mika Ishigaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Christian W Huck
- Institute of Analytical Chemistry and Radiochemistry, CCB-Center for Chemistry and Biomedicine, Innrain 80/82, 6020 Innsbruck, Austria.
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Beć KB, Wójcik MJ, Nakajima T. Quantum Chemical Calculations of Basic Molecules: Alcohols and Carboxylic Acids. ACTA ACUST UNITED AC 2016. [DOI: 10.1255/nirn.1650] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Abstract
This second part of the review series on quantum chemical methods in near infrared (NIR) spectroscopy covers the practical aspects involving applications of generalised second-order vibrational perturbation theory (GVPT2). Basic considerations are discussed here, with the aim of introducing experimental spectroscopists to the topic. The specifics of fully anharmonic calculations, the notably increased computational cost (when compared to routine harmonic vibrational calculations), the choice of software suite and hardware considerations, and various other factors with high importance for practical use of discussed theoretical methods are covered. These deliberations are directly compared to recent reports on the applications of anharmonic theoretical studies to the experimental NIR spectra of aliphatic alcohols and carboxylic acids.
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Affiliation(s)
- Krzysztof B. Beć
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Marek J. Wójcik
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Krakow, Poland
| | - Takahito Nakajima
- RIKEN Advanced Institute for Computational Science, 7-1-26, Minatojima-minami-machi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
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Beć KB, Grabska J, Huck CW, Ozaki Y, Hawranek JP. Computational and quantum chemical study on high-frequency dielectric function of tert-butylmethyl ether in mid-infrared and near-infrared regions. J Mol Liq 2016. [DOI: 10.1016/j.molliq.2016.10.095] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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49
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Beć KB, Futami Y, Wójcik MJ, Nakajima T, Ozaki Y. Spectroscopic and Computational Study of Acetic Acid and Its Cyclic Dimer in the Near-Infrared Region. J Phys Chem A 2016; 120:6170-83. [PMID: 27482762 DOI: 10.1021/acs.jpca.6b04470] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Anharmonic vibrational analysis of near-infrared (NIR) spectra of acetic acid was carried out by anharmonic quantum chemical calculation in a wide concentration range of its CCl4 solution. By predicting vibrational spectra of acetic acid for the first time over a wide NIR region, it was possible to elucidate the influence of the formation of acetic acid cyclic dimer on its NIR spectrum. Quantum chemical simulations were based on coupled cluster and density functional theory quantum methods. Additionally, Møller-Plesset perturbation theory was employed for the additional calculation of hydrogen bonding stabilization energies. An anharmonic vibrational analysis was performed with the use of generalized second-order vibrational perturbation theory (GVPT2). A hybrid approach was assumed, in which monomeric species was treated by CCSD(T)/aug-cc-pVDZ (harmonic approximation) and B3LYP/SNSD (anharmonic approximation) methods. For the cyclic dimer, B3LYP and B2PLYP single and double hybrid functionals, paired with an SNSD basis set, were employed. DFT calculations were augmented with additional empirical dispersion correction. It was found that quantum chemically calculated vibrational modes in the NIR region are in a good agreement with experimental data. The results of anharmonic vibrational analysis were supported by a harmonic shift analysis, for elucidating the very strong anharmonic coupling observed between stretching modes of hydrogen bonded bridge in the cyclic dimer. However, the calculated wavenumbers for combination modes of double hydrogen bonded bridge in the cyclic dimer, which are very sensitive to the formation of hydrogen bonding, were found to be underestimated by quantum chemical methods. Therefore, by band fitting, the wavenumbers and shape parameters for these bands were found, and the modeled spectra were adjusted accordingly. A high accuracy of simulated spectra was achieved, and a detailed analysis of the experimental NIR spectra of acetic acid was possible, with successful identification of numerous experimental bands, including those which originate from concentration effects. It was also found that the main spectral features observed in the NIR spectra of carboxylic acid upon the formation of hydrogen bond should be accounted for combination modes of the stretching and bending vibrations of double hydrogen-bonded bridge in the cyclic dimers of acetic acid.
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Affiliation(s)
- Krzysztof B Beć
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University , Sanda, Hyogo 669-1337, Japan.,RIKEN , 519-1399 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi 980-0845, Japan
| | - Yoshisuke Futami
- Department of Biological and Chemical Systems Engineering, National Institute of Technology, Kumamoto College , Yatsushiro, Kumamoto 866-8501, Japan
| | - Marek J Wójcik
- Faculty of Chemistry, Jagiellonian University , Ingardena 3, 30-060 Kraków, Poland
| | - Takahito Nakajima
- RIKEN Advanced Institute for Computational Science , 7-1-26, Minatojima-minami-machi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School of Science and Technology, Kwansei Gakuin University , Sanda, Hyogo 669-1337, Japan
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