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Berntsson E, Vosough F, Noormägi A, Padari K, Asplund F, Gielnik M, Paul S, Jarvet J, Tõugu V, Roos PM, Kozak M, Gräslund A, Barth A, Pooga M, Palumaa P, Wärmländer SKTS. Characterization of Uranyl (UO 22+) Ion Binding to Amyloid Beta (Aβ) Peptides: Effects on Aβ Structure and Aggregation. ACS Chem Neurosci 2023; 14:2618-2633. [PMID: 37487115 PMCID: PMC10401651 DOI: 10.1021/acschemneuro.3c00130] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 07/06/2023] [Indexed: 07/26/2023] Open
Abstract
Uranium (U) is naturally present in ambient air, water, and soil, and depleted uranium (DU) is released into the environment via industrial and military activities. While the radiological damage from U is rather well understood, less is known about the chemical damage mechanisms, which dominate in DU. Heavy metal exposure is associated with numerous health conditions, including Alzheimer's disease (AD), the most prevalent age-related cause of dementia. The pathological hallmark of AD is the deposition of amyloid plaques, consisting mainly of amyloid-β (Aβ) peptides aggregated into amyloid fibrils in the brain. However, the toxic species in AD are likely oligomeric Aβ aggregates. Exposure to heavy metals such as Cd, Hg, Mn, and Pb is known to increase Aβ production, and these metals bind to Aβ peptides and modulate their aggregation. The possible effects of U in AD pathology have been sparsely studied. Here, we use biophysical techniques to study in vitro interactions between Aβ peptides and uranyl ions, UO22+, of DU. We show for the first time that uranyl ions bind to Aβ peptides with affinities in the micromolar range, induce structural changes in Aβ monomers and oligomers, and inhibit Aβ fibrillization. This suggests a possible link between AD and U exposure, which could be further explored by cell, animal, and epidemiological studies. General toxic mechanisms of uranyl ions could be modulation of protein folding, misfolding, and aggregation.
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Affiliation(s)
- Elina Berntsson
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
- Department
of Chemistry and Biotechnology, Tallinn
University of Technology, 19086 Tallinn, Estonia
| | - Faraz Vosough
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
| | - Andra Noormägi
- Department
of Chemistry and Biotechnology, Tallinn
University of Technology, 19086 Tallinn, Estonia
| | - Kärt Padari
- Institute
of Molecular and Cell Biology, University
of Tartu, 50090 Tartu, Estonia
| | - Fanny Asplund
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
| | - Maciej Gielnik
- Department
of Molecular Biology and Genetics, Aarhus
University, 8000 Aarhus, Denmark
| | - Suman Paul
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
| | - Jüri Jarvet
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
- CellPept
Sweden AB, Kvarngatan
10B, 118 47 Stockholm, Sweden
| | - Vello Tõugu
- Department
of Chemistry and Biotechnology, Tallinn
University of Technology, 19086 Tallinn, Estonia
| | - Per M. Roos
- Institute
of Environmental Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden
- University
Healthcare Unit of Capio St. Göran Hospital, 112 81 Stockholm, Sweden
| | - Maciej Kozak
- Department
of Biomedical Physics, Institute of Physics, Faculty of Physics, Adam Mickiewicz University, 61-712 Poznań, Poland
- SOLARIS
National Synchrotron Radiation Centre, Jagiellonian
University, 31-007 Kraków, Poland
| | - Astrid Gräslund
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
- CellPept
Sweden AB, Kvarngatan
10B, 118 47 Stockholm, Sweden
| | - Andreas Barth
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
| | - Margus Pooga
- Institute
of Technology, University of Tartu, 50090 Tartu, Estonia
| | - Peep Palumaa
- Department
of Chemistry and Biotechnology, Tallinn
University of Technology, 19086 Tallinn, Estonia
| | - Sebastian K. T. S. Wärmländer
- Chemistry
Section, Arrhenius Laboratories, Stockholm
University, 106 91 Stockholm, Sweden
- CellPept
Sweden AB, Kvarngatan
10B, 118 47 Stockholm, Sweden
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Kalintsev A, Guan Q, Brugger J, Migdisov A, Etschmann B, Ram R, Liu W, Mei Y, Testemale D, Xu H. Nature and coordination geometry of geologically relevant aqueous Uranium(VI) complexes up to 400 ºC: A review and new data. JOURNAL OF HAZARDOUS MATERIALS 2023; 452:131309. [PMID: 37018892 DOI: 10.1016/j.jhazmat.2023.131309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 03/23/2023] [Accepted: 03/26/2023] [Indexed: 06/19/2023]
Abstract
The structure of the uranyl aqua ion (UO22+) and a number of its inorganic complexes (specifically, UO2Cl+, UO2Cl20, UO2SO40, [Formula: see text] , [Formula: see text] and UO2OH42-) have been characterised using X-Ray absorption spectroscopy/extended X-Ray absorption fine structure (XAS/EXAFS) at temperatures ranging from 25 to 326 ºC. Results of ab initio molecular dynamics (MD) calculations are also reported for uranyl in chloride and sulfate-bearing fluids from 25 to 400 ºC and 600 bar to 20 kilobar (kb). These results are reported alongside a comprehensive review of prior structural characterisation work with particular focus given to EXAFS works to provide a consistent and up-to-date view of the structure of these complexes under conditions relevant to U mobility in ore-forming systems and around high-grade nuclear waste repositories. Regarding reported EXAFS results, average equatorial coordination was found to decrease in uranyl and its sulfate and chloride complexes as temperature rose - the extent of this decrease differed between species and solution compositions but typically resulted in an equatorial coordination number of ∼3-4 at temperatures above 200 ºC. The [Formula: see text] complex was observed at temperatures from 25 to 247 ºC and exhibited no major structural changes over this temperature range. UO2OH42- exhibited only minor structural changes over a temperature range from 88 to 326 ºC and was suggested to manifest fivefold coordination with four hydroxyl molecules and one water molecule around its equator. Average coordination values derived from fits of the reported EXAFS data were compared to average coordination values calculated using the experimentally derived thermodynamic data for chloride complexes reported by Dargent et al. (2013) and Migdisov et al. (2018b), and for sulfate complexes reported by Alcorn et al. (2019) and Kalintsev et al. (2019). Sulfate EXAFS data were well described by available thermodynamic data, and chloride EXAFS data were described well by the thermodynamic data of Migdisov et al. (2018b), but not by the data of Dargent et al. (2013). The ab initio molecular dynamics calculations confirmed the trends in equatorial coordination observed with EXAFS and were also able to provide an insight into the effect of pressure in equatorial water coordination - for a given temperature, higher pressures appear to lead to a greater number of equatorially bound waters counteracting the temperature effect.
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Affiliation(s)
- Alexander Kalintsev
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia; Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA.
| | - Qiushi Guan
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Joël Brugger
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Artas Migdisov
- Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA
| | - Barbara Etschmann
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Rahul Ram
- School of Earth, Atmosphere and Environment, Monash University, 9 Rainforest Walk, VIC 3800, Australia
| | - Weihua Liu
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Yuan Mei
- CSIRO Mineral Resources, Kensington, WA 6151, Australia
| | - Denis Testemale
- CNRS, Université Grenoble Alpes, Institut NEEL, Grenoble F-38000, France
| | - Hongwu Xu
- Los Alamos National Laboratory, Earth & Environmental Division, Los Alamos, NM, USA
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Parthasarathy S, . Ganesh Kumar V, Subbarao RV. A remote conductometric titration method for simultaneous determination of uranium and nitric acid concentrations at elevated temperatures. J Radioanal Nucl Chem 2021. [DOI: 10.1007/s10967-020-07581-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Zhang C, Liu L, Jia H. An Atomic-Scale Understanding of the Solution Chemistry of Antimony(V): Insights from First-Principles Molecular Dynamics Simulation. Inorg Chem 2020; 59:15741-15750. [PMID: 33040536 DOI: 10.1021/acs.inorgchem.0c02162] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this study, the structure, hydrolysis, and complexation of Sb(V) in aqueous solution has been elucidated by using first-principles molecular dynamics (FPMD) simulations. The results show that both antimonic acid and its deprotonated form have an octahedral configuration, with average Sb-OH2 and Sb-OH distances of 2.25 and 2.05 Å, respectively. The computed pKa of [Sb(OH)5(OH2)] is 1.8, while [Sb(OH)6]- has an extremely high pKa. Consequently, [Sb(OH)6]- is the most dominant species of Sb(V) under common environmental conditions. A stable aqueous complex can form between [Sb(OH)6]- and common cations, and an Sb-Al bidentate complex has the largest dissociation free energy, followed by a Sb-Mg bidentate complex, indicating that they have significantly higher stabilities. For Na+ and Ca2+, their respective monodentate and bidentate complexes have similar dissociation free energies, indicating very close possibilities. These findings provide a comprehensive understanding of the solution chemistry of Sb(V) from a quantitative and microscopic perspective.
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Affiliation(s)
- Chi Zhang
- Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, People's Republic of China
| | - Libin Liu
- Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, People's Republic of China
| | - Hanzhong Jia
- Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, People's Republic of China
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Jia M, Zhang C, Cox SJ, Sprik M, Cheng J. Computing Surface Acidity Constants of Proton Hopping Groups from Density Functional Theory-Based Molecular Dynamics: Application to the SnO 2(110)/H 2O Interface. J Chem Theory Comput 2020; 16:6520-6527. [PMID: 32794753 DOI: 10.1021/acs.jctc.0c00021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Proton transfer at metal oxide/water interfaces plays an important role in electrochemistry, geochemistry, and environmental science. The key thermodynamic quantity to characterize this process is the surface acidity constant. An ab initio method that combines density functional theory-based molecular dynamics (DFTMD) and free energy perturbation theory has been established for computing surface acidity constants. However, it involves a reversible proton insertion procedure in which frequent proton hopping, e.g., for strong bases and some oxide surfaces (e.g., SnO2), can cause instability issues in electronic structure calculation. In the original implementation, harmonic restraining potentials are imposed on all O-H bonds (denoted by the VrH scheme) to prevent proton hopping and thus may not be applicable for systems involving spontaneous proton hopping. In this work, we introduce an improved restraining scheme with a repulsive potential Vrep to compute the surface acidities of systems in which proton hopping is spontaneous and fast. In this Vrep scheme, a Buckingham-type repulsive potential Vrep is applied between the deprotonation site and all other protons in DFTMD simulations. We first verify the Vrep scheme by calculating the pKa values of H2O and aqueous HS- solution (i.e., strong conjugate bases) and then apply it to the SnO2(110)/H2O interface. It is found that the Vrep scheme leads to a prediction of the point of zero charge (PZC) of 4.6, which agrees well with experiment. The intrinsic individual pKa values of the terminal five-coordinated Sn site (Sn5cOH2) and bridge oxygen site (Sn2ObrH+) are 4.4 and 4.7, respectively, both being almost the same as the PZC. The similarity of the two pKa values indicates that dissociation of terminal water has almost zero free energy at this proton hopping interface (i.e., partial water dissociation), as expected from the acid-base equilibrium on SnO2.
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Affiliation(s)
- Mei Jia
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P. R. China
| | - Chao Zhang
- Department of Chemistry-Ångström Laboratory, Uppsala University, Lägerhyddsvägen 1, PO Box 538, Uppsala 75121, Sweden
| | - Stephen J Cox
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom
| | - Michiel Sprik
- Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom
| | - Jun Cheng
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P. R. China
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Yang XH, Cuesta A, Cheng J. Computational Ag/AgCl Reference Electrode from Density Functional Theory-Based Molecular Dynamics. J Phys Chem B 2019; 123:10224-10232. [PMID: 31693366 DOI: 10.1021/acs.jpcb.9b06650] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We have developed a scheme to compute the standard potential of the Ag/AgCl reference electrode using density functional theory-based molecular dynamics, similar to the computational standard hydrogen electrode (SHE) developed by Cheng, Sulpizi, and Sprik [J. Chem. Phys. 2009, 131, 154504], with which our new computational reference electrode was compared. We have obtained a similar value of the potential of the Ag/AgCl electrode versus SHE to the experiment. The newly developed computational reference electrode will be extended to nonaqueous solvents in the future, where it will be used to predict standard equilibrium potentials to be compared with experimental data.
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Affiliation(s)
- Xiao-Hui Yang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering , Xiamen University , Xiamen 361005 , China.,Department of Chemistry , University of Aberdeen , Aberdeen AB24 3UE , U.K
| | - Angel Cuesta
- Department of Chemistry , University of Aberdeen , Aberdeen AB24 3UE , U.K
| | - Jun Cheng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering , Xiamen University , Xiamen 361005 , China
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Zhang C, Liu X, Tinnacher RM, Tournassat C. Mechanistic Understanding of Uranyl Ion Complexation on Montmorillonite Edges: A Combined First-Principles Molecular Dynamics-Surface Complexation Modeling Approach. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:8501-8509. [PMID: 29949352 DOI: 10.1021/acs.est.8b02504] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Systematic first-principles molecular dynamics (FPMD) simulations were carried out to study the structures, free energies, and acidity constants of UO22+ surface complexes on montmorillonite in order to elucidate the surface complexation mechanisms of the uranyl ion (UO22+) on clay mineral edges at the atomic scale. Four representative complexing sites were investigated, that is, ≡Al(OH)2 and ≡AlOHSiO on the (010) surface and ≡AlOHOa and ≡SiOOa on the (110) surface. The results show that uranyl ions form bidentate complexes on these sites. All calculated binding free energies for these complexes are very similar. These bidentate complexes can be hydrolyzed, and their corresponding derived p Ka values (around 5.0 and 9.0 for p Ka1 and p Ka2, respectively) indicate that UO2(OH)+ and UO2(OH)2 surface groups are the dominant surface species in the environmental pH range. The OH groups of UO2(OH)2 surface complexes can act as complexing sites for subsequent metals. Additional simulations showed that such multinuclear adsorption is feasible and can be important at high pH. Furthermore, FPMD simulation results served as input parameters for an electrostatic thermodynamic surface complexation model (SCM) that adequately reproduced adsorption data from the literature. Overall, this study provides an improved understanding of UO22+ complexation on clay mineral edge surfaces.
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Affiliation(s)
- Chi Zhang
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210093 , P.R. China
| | - Xiandong Liu
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210093 , P.R. China
| | - Ruth M Tinnacher
- Department of Chemistry & Biochemistry , California State University East Bay , Hayward , California 94542 , United States
- Energy Geosciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | - Christophe Tournassat
- Department of Chemistry & Biochemistry , California State University East Bay , Hayward , California 94542 , United States
- BRGM , Orléans 45060 , France
- Univ. Orléans, CNRS, BRGM, ISTO, UMR 7327 , F-45071 , Orléans , France
- Energy Geosciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
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8
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He M, Liu X, Cheng J, Lu X, Zhang C, Wang R. Uranyl Arsenate Complexes in Aqueous Solution: Insights from First-Principles Molecular Dynamics Simulations. Inorg Chem 2018; 57:5801-5809. [PMID: 29741893 DOI: 10.1021/acs.inorgchem.8b00136] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this study, the structures and acidity constants (p Ka's) of uranyl arsenate complexes in solutions have been revealed by using the first principle molecular dynamics technique. The results show that uranyl and arsenate form stable complexes with the U/As ratios of 1:1 and 1:2, and the bidentate complexation between U and As is highly favored. Speciation-pH distributions are derived based on free energy and p Ka calculations, which indicate that for the 1:1 species, UO2(H2AsO4)(H2O)3+ is the major species at pH < 7, while UO2(HAsO4)(H2O)30 and UO2(AsO4)(H2O)3- dominate in acid-to-alkaline and extreme alkaline pH ranges. For the 1:2 species, UO2(H2AsO4)2(H2O)0 is dominant under acid-to-neutral pH conditions, while UO2(HAsO4)(H2AsO4)(H2O)-, UO2(HAsO4)(HAsO4)(H2O)2-, and UO2(AsO4)(HAsO4)(H2O)3- become the major forms in the pH range of 7.2-10.7, 10.7-12.1, and >12.1, respectively.
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Affiliation(s)
- Mengjia He
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Xiandong Liu
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Jun Cheng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering , Xiamen University , Xiamen 361005 , China.,Department of Chemistry , University of Aberdeen , Aberdeen AB24 3UE , United Kingdom
| | - Xiancai Lu
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Chi Zhang
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
| | - Rucheng Wang
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering , Nanjing University , Nanjing 210046 , P. R. China
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Larsen CB, Wenger OS. Photoredox Catalysis with Metal Complexes Made from Earth-Abundant Elements. Chemistry 2017; 24:2039-2058. [PMID: 28892199 DOI: 10.1002/chem.201703602] [Citation(s) in RCA: 227] [Impact Index Per Article: 32.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Revised: 09/08/2017] [Indexed: 01/14/2023]
Abstract
Photoredox chemistry with metal complexes as sensitizers and catalysts frequently relies on precious elements such as ruthenium or iridium. Over the past 5 years, important progress towards the use of complexes made from earth-abundant elements in photoredox catalysis has been made. This review summarizes the advances made with photoactive CrIII , FeII , CuI , ZnII , ZrIV , Mo0 , and UVI complexes in the context of synthetic organic photoredox chemistry using visible light as an energy input. Mechanistic considerations are combined with discussions of reaction types and scopes. Perspectives for the future of the field are discussed against the background of recent significant developments of new photoactive metal complexes made from earth-abundant elements.
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Affiliation(s)
- Christopher B Larsen
- Department of Chemistry, University of Basel, St Johanns-Ring 19, Basel, 4056, Switzerland
| | - Oliver S Wenger
- Department of Chemistry, University of Basel, St Johanns-Ring 19, Basel, 4056, Switzerland
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