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For: Tämm K, Sikk L, Burk J, Rallo R, Pokhrel S, Mädler L, Scott-Fordsmand JJ, Burk P, Tamm T. Parametrization of nanoparticles: development of full-particle nanodescriptors. Nanoscale 2016;8:16243-16250. [PMID: 27714136 DOI: 10.1039/c6nr04376c] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Number Cited by Other Article(s)
1
Varsou DD, Kolokathis PD, Antoniou M, Sidiropoulos NK, Tsoumanis A, Papadiamantis AG, Melagraki G, Lynch I, Afantitis A. In silico assessment of nanoparticle toxicity powered by the Enalos Cloud Platform: Integrating automated machine learning and synthetic data for enhanced nanosafety evaluation. Comput Struct Biotechnol J 2024;25:47-60. [PMID: 38646468 PMCID: PMC11026727 DOI: 10.1016/j.csbj.2024.03.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 03/22/2024] [Accepted: 03/23/2024] [Indexed: 04/23/2024]  Open
2
Serratosa F. ATENA: A Web-Based Tool for Modelling Metal Oxide Nanoparticles Based on NanoFingerprint Quantitative Structure-Activity Relationships. Molecules 2024;29:2235. [PMID: 38792096 PMCID: PMC11124079 DOI: 10.3390/molecules29102235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 05/07/2024] [Accepted: 05/08/2024] [Indexed: 05/26/2024]  Open
3
Del Giudice G, Serra A, Saarimäki LA, Kotsis K, Rouse I, Colibaba SA, Jagiello K, Mikolajczyk A, Fratello M, Papadiamantis AG, Sanabria N, Annala ME, Morikka J, Kinaret PAS, Voyiatzis E, Melagraki G, Afantitis A, Tämm K, Puzyn T, Gulumian M, Lobaskin V, Lynch I, Federico A, Greco D. An ancestral molecular response to nanomaterial particulates. NATURE NANOTECHNOLOGY 2023;18:957-966. [PMID: 37157020 PMCID: PMC10427433 DOI: 10.1038/s41565-023-01393-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 03/31/2023] [Indexed: 05/10/2023]
4
Yan X, Yue T, Winkler DA, Yin Y, Zhu H, Jiang G, Yan B. Converting Nanotoxicity Data to Information Using Artificial Intelligence and Simulation. Chem Rev 2023. [PMID: 37262026 DOI: 10.1021/acs.chemrev.3c00070] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
5
Gomes SIL, Roca CP, Pokhrel S, Mädler L, Scott-Fordsmand JJ, Amorim MJB. TiO2 nanoparticles' library toxicity (UV and non-UV exposure) - High-throughput in vivo transcriptomics reveals mechanisms. NANOIMPACT 2023;30:100458. [PMID: 36858316 DOI: 10.1016/j.impact.2023.100458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 02/21/2023] [Accepted: 02/24/2023] [Indexed: 06/03/2023]
6
Singhal A, Sevink GJA. A Core-Shell Approach for Systematically Coarsening Nanoparticle-Membrane Interactions: Application to Silver Nanoparticles. NANOMATERIALS (BASEL, SWITZERLAND) 2022;12:3859. [PMID: 36364637 PMCID: PMC9656456 DOI: 10.3390/nano12213859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 10/28/2022] [Accepted: 10/28/2022] [Indexed: 06/16/2023]
7
Mancardi G, Alberghini M, Aguilera-Porta N, Calatayud M, Asinari P, Chiavazzo E. Multi-Scale Modelling of Aggregation of TiO2 Nanoparticle Suspensions in Water. NANOMATERIALS 2022;12:nano12020217. [PMID: 35055235 PMCID: PMC8778026 DOI: 10.3390/nano12020217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 12/20/2021] [Accepted: 12/30/2021] [Indexed: 02/04/2023]
8
Gomes SIL, Amorim MJB, Pokhrel S, Mädler L, Fasano M, Chiavazzo E, Asinari P, Jänes J, Tämm K, Burk J, Scott-Fordsmand JJ. Machine learning and materials modelling interpretation of in vivo toxicological response to TiO2 nanoparticles library (UV and non-UV exposure). NANOSCALE 2021;13:14666-14678. [PMID: 34533558 DOI: 10.1039/d1nr03231c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
9
Rouse I, Power D, Brandt EG, Schneemilch M, Kotsis K, Quirke N, Lyubartsev AP, Lobaskin V. First principles characterisation of bio-nano interface. Phys Chem Chem Phys 2021;23:13473-13482. [PMID: 34109956 DOI: 10.1039/d1cp01116b] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
10
Yu H, Luo D, Dai L, Cheng F. In silico nanosafety assessment tools and their ecosystem-level integration prospect. NANOSCALE 2021;13:8722-8739. [PMID: 33960351 DOI: 10.1039/d1nr00115a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
11
Afantitis A. Nanoinformatics: Artificial Intelligence and Nanotechnology in the New Decade. Comb Chem High Throughput Screen 2021;23:4-5. [PMID: 32189589 DOI: 10.2174/138620732301200316112000] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
12
Trinh TX, Kim J. Status Quo in Data Availability and Predictive Models of Nano-Mixture Toxicity. NANOMATERIALS 2021;11:nano11010124. [PMID: 33430414 PMCID: PMC7826902 DOI: 10.3390/nano11010124] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 12/29/2020] [Accepted: 01/04/2021] [Indexed: 11/16/2022]
13
Damasco JA, Ravi S, Perez JD, Hagaman DE, Melancon MP. Understanding Nanoparticle Toxicity to Direct a Safe-by-Design Approach in Cancer Nanomedicine. NANOMATERIALS (BASEL, SWITZERLAND) 2020;10:E2186. [PMID: 33147800 PMCID: PMC7692849 DOI: 10.3390/nano10112186] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 10/26/2020] [Accepted: 10/28/2020] [Indexed: 12/22/2022]
14
Papadiamantis AG, Jänes J, Voyiatzis E, Sikk L, Burk J, Burk P, Tsoumanis A, Ha MK, Yoon TH, Valsami-Jones E, Lynch I, Melagraki G, Tämm K, Afantitis A. Predicting Cytotoxicity of Metal Oxide Nanoparticles using Isalos Analytics Platform. NANOMATERIALS (BASEL, SWITZERLAND) 2020;10:E2017. [PMID: 33066094 PMCID: PMC7601995 DOI: 10.3390/nano10102017] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 10/03/2020] [Accepted: 10/07/2020] [Indexed: 02/07/2023]
15
Zhou Q, Liu L, Liu N, He B, Hu L, Wang L. Determination and characterization of metal nanoparticles in clams and oysters. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020;198:110670. [PMID: 32344268 DOI: 10.1016/j.ecoenv.2020.110670] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 04/20/2020] [Indexed: 05/21/2023]
16
Afantitis A, Melagraki G, Isigonis P, Tsoumanis A, Varsou DD, Valsami-Jones E, Papadiamantis A, Ellis LJA, Sarimveis H, Doganis P, Karatzas P, Tsiros P, Liampa I, Lobaskin V, Greco D, Serra A, Kinaret PAS, Saarimäki LA, Grafström R, Kohonen P, Nymark P, Willighagen E, Puzyn T, Rybinska-Fryca A, Lyubartsev A, Alstrup Jensen K, Brandenburg JG, Lofts S, Svendsen C, Harrison S, Maier D, Tamm K, Jänes J, Sikk L, Dusinska M, Longhin E, Rundén-Pran E, Mariussen E, El Yamani N, Unger W, Radnik J, Tropsha A, Cohen Y, Leszczynski J, Ogilvie Hendren C, Wiesner M, Winkler D, Suzuki N, Yoon TH, Choi JS, Sanabria N, Gulumian M, Lynch I. NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment. Comput Struct Biotechnol J 2020;18:583-602. [PMID: 32226594 PMCID: PMC7090366 DOI: 10.1016/j.csbj.2020.02.023] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 02/18/2020] [Accepted: 02/29/2020] [Indexed: 01/26/2023]  Open
17
Mei N, Hedberg J, Odnevall Wallinder I, Blomberg E. Influence of Biocorona Formation on the Transformation and Dissolution of Cobalt Nanoparticles under Physiological Conditions. ACS OMEGA 2019;4:21778-21791. [PMID: 31891055 PMCID: PMC6933593 DOI: 10.1021/acsomega.9b02641] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Accepted: 11/14/2019] [Indexed: 06/10/2023]
18
Yan X, Sedykh A, Wang W, Zhao X, Yan B, Zhu H. In silico profiling nanoparticles: predictive nanomodeling using universal nanodescriptors and various machine learning approaches. NANOSCALE 2019;11:8352-8362. [PMID: 30984943 DOI: 10.1039/c9nr00844f] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
19
Hedberg J, Blomberg E, Odnevall Wallinder I. In the Search for Nanospecific Effects of Dissolution of Metallic Nanoparticles at Freshwater-Like Conditions: A Critical Review. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019;53:4030-4044. [PMID: 30908015 DOI: 10.1021/acs.est.8b05012] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
20
Wang J, Wang Y, Huang Y, Peijnenburg WJG, Chen J, Li X. Development of a nano-QSPR model to predict band gaps of spherical metal oxide nanoparticles. RSC Adv 2019;9:8426-8434. [PMID: 35518709 PMCID: PMC9061875 DOI: 10.1039/c8ra10226k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 03/06/2019] [Indexed: 01/11/2023]  Open
21
Burk J, Sikk L, Burk P, Manshian BB, Soenen SJ, Scott-Fordsmand JJ, Tamm T, Tämm K. Fe-Doped ZnO nanoparticle toxicity: assessment by a new generation of nanodescriptors. NANOSCALE 2018;10:21985-21993. [PMID: 30452031 DOI: 10.1039/c8nr05220d] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
22
Afantitis A, Melagraki G, Tsoumanis A, Valsami-Jones E, Lynch I. A nanoinformatics decision support tool for the virtual screening of gold nanoparticle cellular association using protein corona fingerprints. Nanotoxicology 2018;12:1148-1165. [PMID: 30182778 DOI: 10.1080/17435390.2018.1504998] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
23
Siegrist S, Cörek E, Detampel P, Sandström J, Wick P, Huwyler J. Preclinical hazard evaluation strategy for nanomedicines. Nanotoxicology 2018;13:73-99. [PMID: 30182784 DOI: 10.1080/17435390.2018.1505000] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
24
Gozalbes R, Vicente de Julián-Ortiz J. Applications of Chemoinformatics in Predictive Toxicology for Regulatory Purposes, Especially in the Context of the EU REACH Legislation. ACTA ACUST UNITED AC 2018. [DOI: 10.4018/ijqspr.2018010101] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
25
Chen G, Peijnenburg W, Xiao Y, Vijver MG. Current Knowledge on the Use of Computational Toxicology in Hazard Assessment of Metallic Engineered Nanomaterials. Int J Mol Sci 2017;18:ijms18071504. [PMID: 28704975 PMCID: PMC5535994 DOI: 10.3390/ijms18071504] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Revised: 07/07/2017] [Accepted: 07/10/2017] [Indexed: 11/16/2022]  Open
26
Manshian BB, Pokhrel S, Himmelreich U, Tämm K, Sikk L, Fernández A, Rallo R, Tamm T, Mädler L, Soenen SJ. In Silico Design of Optimal Dissolution Kinetics of Fe-Doped ZnO Nanoparticles Results in Cancer-Specific Toxicity in a Preclinical Rodent Model. Adv Healthc Mater 2017;6. [PMID: 28230930 DOI: 10.1002/adhm.201601379] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 01/12/2017] [Indexed: 11/06/2022]
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