1
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Fan WL, Huang SY, Yang XJ, Bintang Ilhami F, Chen JK, Cheng CC. Hydrogen-bonded cytosine-endowed supramolecular polymeric nanogels: Highly efficient cancer cell targeting and enhanced therapeutic efficacy. J Colloid Interface Sci 2024; 665:329-344. [PMID: 38531278 DOI: 10.1016/j.jcis.2024.03.154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Revised: 03/10/2024] [Accepted: 03/23/2024] [Indexed: 03/28/2024]
Abstract
We demonstrate that cytosine moieties within physically cross-linked supramolecular polymers not only manipulate drug delivery and release, but also confer specific targeting of cancer cells to effectively enhance the safety and efficacy of chemotherapy-and thus hold significant potential as a new perspective for development of drug delivery systems. Herein, we successfully developed physically cross-linked supramolecular polymers (PECH-PEG-Cy) comprised of hydrogen-bonding cytosine pendant groups, hydrophilic poly(ethylene glycol) side chains, and a hydrophobic poly(epichlorohydrin) main chain. The polymers spontaneously self-assemble into a reversibly hydrogen-bonded network structure induced by cytosine and directly form spherical nanogels in aqueous solution. Nanogels with a high hydrogen-bond network density (i.e., a higher content of cytosine moieties) exhibit outstanding long-term structural stability in cell culture substrates containing serum, whereas nanogels with a relatively low hydrogen-bond network density cannot preserve their structural integrity. The nanogels also exhibit numerous unique physicochemical characteristics in aqueous solution, such as a desirable spherical size, high biocompatibility with normal and cancer cells, excellent drug encapsulation capacity, and controlled pH-responsive drug release properties. More importantly, in vitro experiments conclusively indicate the drug-loaded PECH-PEG-Cy nanogels can selectively induce cancer cell-specific apoptosis and cell death via cytosine receptor-mediated endocytosis, without significantly harming normal cells. In contrast, control drug-loaded PECH-PEG nanogels, which lack cytosine moieties in their structure, can only induce cell death in cancer cells through non-specific pathways, which significantly inhibits the induction of apoptosis. This work clearly demonstrates that the cytosine moieties in PECH-PEG-Cy nanogels confer selective affinity for the surface of cancer cells, which enhances their targeted cellular uptake, cytotoxicity, and subsequent induction of programmed cell death in cancer cells.
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Affiliation(s)
- Wen-Lu Fan
- Graduate Institute of Applied Science and Technology, National Taiwan University of Science and Technology, Taipei 10607, Taiwan
| | - Shan-You Huang
- Graduate Institute of Applied Science and Technology, National Taiwan University of Science and Technology, Taipei 10607, Taiwan
| | - Xiu-Jing Yang
- Graduate Institute of Applied Science and Technology, National Taiwan University of Science and Technology, Taipei 10607, Taiwan
| | - Fasih Bintang Ilhami
- Department of Natural Science, Faculty of Mathematics and Natural Science, Universitas Negeri Surabaya, Surabaya 60231, Indonesia
| | - Jem-Kun Chen
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan
| | - Chih-Chia Cheng
- Graduate Institute of Applied Science and Technology, National Taiwan University of Science and Technology, Taipei 10607, Taiwan; Advanced Membrane Materials Research Center, National Taiwan University of Science and Technology, Taipei 10607, Taiwan.
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2
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Nogal N, Guisán S, Dellemme D, Surin M, de la Escosura A. Selectivity in the chiral self-assembly of nucleobase-arylazopyrazole photoswitches along DNA templates. J Mater Chem B 2024; 12:3703-3709. [PMID: 38505984 DOI: 10.1039/d4tb00041b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2024]
Abstract
The control of supramolecular DNA assembly through external stimuli such as light represents a promising approach to control bioreactions, and modulate hybridization or delivery processes. Here, we report on the design of nucleobase-containing arylazopyrazole photoswitches that undergo chiral organization upon self-assembly along short DNA templates. Chiroptical spectroscopy shows that the specific nucleobases allow selectivity in the resulting supramolecular DNA complexes, and UV light irradiation triggers partial desorption of the arylazopyrazole photoswitches. Molecular modeling studies reveal the differences of binding modes between the two configurations in the templated assembly. Remarkably, our results show that the photoswitching behaviour controls the self-assembly process along DNA, opening the way to potential applications as nano- and biomaterials.
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Affiliation(s)
- Noemí Nogal
- Departament of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, Madrid 28049, Spain.
| | - Santiago Guisán
- Departament of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, Madrid 28049, Spain.
| | - David Dellemme
- Laboratory for Chemistry of Novel Materials, Center for Innovation in Materials and Polymers, University of Mons - UMONS, 20 Place du Parc, Mons B-7000, Belgium.
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Center for Innovation in Materials and Polymers, University of Mons - UMONS, 20 Place du Parc, Mons B-7000, Belgium.
| | - Andrés de la Escosura
- Departament of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, Madrid 28049, Spain.
- Institute for Advanced Research in Chemistry (IAdChem), Campus de Cantoblanco, Madrid 28049, Spain
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3
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Thomas M, Varlas S, Wilks TR, Fielden SDP, O'Reilly RK. Controlled node growth on the surface of polymersomes. Chem Sci 2024; 15:4396-4402. [PMID: 38516085 PMCID: PMC10952076 DOI: 10.1039/d3sc05915d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Accepted: 02/16/2024] [Indexed: 03/23/2024] Open
Abstract
Incorporating nucleobases into synthetic polymers has proven to be a versatile method for controlling self-assembly. The formation of strong directional hydrogen bonds between complementary nucleobases provides a driving force that permits access to complex particle morphologies. Here, nucleobase pairing was used to direct the formation and lengthening of nodes on the outer surface of vesicles formed from polymers (polymersomes) functionalised with adenine in their membrane-forming domains. Insertion of a self-assembling short diblock copolymer containing thymine into the polymersome membranes caused an increase in steric crowding at the hydrophilic/hydrophobic interface, which was relieved by initial node formation and subsequent growth. Nano-objects were imaged by (cryo-)TEM, which permitted quantification of node coverage and length. The ability to control node growth on the surface of polymersomes provides a new platform to develop higher-order nanomaterials with tailorable properties.
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Affiliation(s)
- Marjolaine Thomas
- School of Chemistry, University of Birmingham Edgbaston Birmingham B15 2TT UK
| | - Spyridon Varlas
- School of Chemistry, University of Birmingham Edgbaston Birmingham B15 2TT UK
| | - Thomas R Wilks
- School of Chemistry, University of Birmingham Edgbaston Birmingham B15 2TT UK
| | - Stephen D P Fielden
- School of Chemistry, University of Birmingham Edgbaston Birmingham B15 2TT UK
| | - Rachel K O'Reilly
- School of Chemistry, University of Birmingham Edgbaston Birmingham B15 2TT UK
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4
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Ilhami FB, Birhan YS, Cheng CC. Hydrogen-Bonding Interactions from Nucleobase-Decorated Supramolecular Polymer: Synthesis, Self-Assembly and Biomedical Applications. ACS Biomater Sci Eng 2024; 10:234-254. [PMID: 38103183 DOI: 10.1021/acsbiomaterials.3c01097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]
Abstract
The fabrication of supramolecular materials for biomedical applications such as drug delivery, bioimaging, wound-dressing, adhesion materials, photodynamic/photothermal therapy, infection control (as antibacterial), etc. has grown tremendously, due to their unique properties, especially the formation of hydrogen bonding. Nevertheless, void space in the integration process, lack of feasibility in the construction of supramolecular materials of natural origin in living biological systems, potential toxicity, the need for complex synthesis protocols, and costly production process limits the actual application of nanomaterials for advanced biomedical applications. On the other hand, hydrogen bonding from nucleobases is one of the strategies that shed light on the blurred deployment of nanomaterials in medical applications, given the increasing reports of supramolecular polymers that promote advanced technologies. Herein, we review the extensive body of literature about supramolecular functional biomaterials based on nucleobase hydrogen bonding pertinent to different biomedical applications. It focuses on the fundamental understanding about the synthesis, nucleobase-decorated supramolecular architecture, and novel properties with special emphasis on the recent developments in the assembly of nanostructures via hydrogen-bonding interactions of nucleobase. Moreover, the challenges, plausible solutions, and prospects of the so-called hydrogen bonding interaction from nucleobase for the fabrication of functional biomaterials are outlined.
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Affiliation(s)
- Fasih Bintang Ilhami
- Department of Natural Science, Faculty of Mathematics and Natural Science, Universitas Negeri Surabaya, Surabaya 60231, Indonesia
| | - Yihenew Simegniew Birhan
- Department of Chemistry, College of Natural and Computational Sciences, Debre Markos University, P.O. Box 269, Debre Markos 00000, Ethiopia
| | - Chih-Chia Cheng
- Graduate Institute of Applied Science and Technology, National Taiwan University of Science and Technology, Taipei 10607, Taiwan
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5
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García Coll J, Ulrich S. Nucleic-Acid-Templated Synthesis of Smart Polymer Vectors for Gene Delivery. Chembiochem 2023; 24:e202300333. [PMID: 37401911 DOI: 10.1002/cbic.202300333] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 06/12/2023] [Accepted: 07/04/2023] [Indexed: 07/05/2023]
Abstract
Nucleic acids are information-rich and readily available biomolecules, which can be used to template the polymerization of synthetic macromolecules. Here, we highlight the control over the size, composition, and sequence one can nowadays obtain by using this methodology. We also highlight how templated processes exploiting dynamic covalent polymerization can, in return, result in therapeutic nucleic acids fabricating their own dynamic delivery vector - a biomimicking concept that can provide original solutions for gene therapies.
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Affiliation(s)
- José García Coll
- IBMM, Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 34095, Montpellier, France
| | - Sébastien Ulrich
- IBMM, Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 34095, Montpellier, France
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6
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Wagh MA, Shinde DR, Gamidi RK, Sanjayan GJ. 2-Amino-5-methylene-pyrimidine-4,6-dione-based Janus G-C nucleobase as a versatile building block for self-assembly. Org Biomol Chem 2023; 21:6914-6918. [PMID: 37593940 DOI: 10.1039/d3ob01174g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/19/2023]
Abstract
This communication reports a nature-inspired Janus G-C nucleobase featuring two recognition sites: DDA (G mimic) and DAA (C mimic), which is capable of forming a linear tape-like supramolecular polymer structure. As demonstrated herein, the amino group of this self-assembling system can be further modified to yield a highly stable quadruple H-bonding system as well as a masked self-assembling system cleavable upon exposure to light.
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Affiliation(s)
- Mahendra A Wagh
- Organic Chemistry Division, CSIR-National Chemical Laboratory (CSIR-NCL), Dr. Homi Bhabha Road, Pune-411008, India.
- Academy of Scientific and Innovative research (AcSIR), Sector 19, Kamla Nehru Nagar, Ghaziabad, Uttar Pradesh-201002, India
| | - Dinesh R Shinde
- Organic Chemistry Division, CSIR-National Chemical Laboratory (CSIR-NCL), Dr. Homi Bhabha Road, Pune-411008, India.
- Academy of Scientific and Innovative research (AcSIR), Sector 19, Kamla Nehru Nagar, Ghaziabad, Uttar Pradesh-201002, India
| | - Rama Krishna Gamidi
- Organic Chemistry Division, CSIR-National Chemical Laboratory (CSIR-NCL), Dr. Homi Bhabha Road, Pune-411008, India.
| | - Gangadhar J Sanjayan
- Organic Chemistry Division, CSIR-National Chemical Laboratory (CSIR-NCL), Dr. Homi Bhabha Road, Pune-411008, India.
- Academy of Scientific and Innovative research (AcSIR), Sector 19, Kamla Nehru Nagar, Ghaziabad, Uttar Pradesh-201002, India
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7
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Sikder A, Esen C, O'Reilly RK. Nucleobase-Interaction-Directed Biomimetic Supramolecular Self-Assembly. Acc Chem Res 2022; 55:1609-1619. [PMID: 35671460 PMCID: PMC9219111 DOI: 10.1021/acs.accounts.2c00135] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
ConspectusThe design and fabrication of synthetic self-assembled systems that can mimic some biological features require exquisitely sophisticated components that make use of supramolecular interactions to attain enhanced structural and functional complexity. In nature, nucleobase interactions play a key role in biological functions in living organisms, including transcription and translation processes. Inspired by nature, scientists are progressively exploring nucleobase synthons to create a diverse range of functional systems with a plethora of nanostructures by virtue of molecular-recognition-directed assembly and flexible programmability of the base-pairing interactions. To that end, nucleobase-functionalized molecules and macromolecules are attracting great attention because of their versatile structures with smart and adaptive material properties such as stimuli responsiveness, interaction with external agents, and ability to repair structural defects. In this regard, a range of nucleobase-interaction-mediated hierarchical self-assembled systems have been developed to obtain biomimetic materials with unique properties. For example, a new "grafting to" strategy utilizing complementary nucleobase interactions has been demonstrated to temporarily control the functional group display on micellar surfaces. In a different approach, complementary nucleobase interactions have been explored to enable morphological transitions in functionalized diblock copolymer assembly. It has been demonstrated that complementary nucleobase interactions can drive the morphological transformation to produce highly anisotropic nanoparticles by controlling the assembly processes at multiple length scales. Furthermore, nucleobase-functionalized bottle brush polymers have been employed to generate stimuli-responsive hierarchical assembly. Finally, such interactions have been exploited to induce biomimetic segregation in polymer self-assembly, which has been employed as a template to synthesize polymers with narrow polydispersity. It is evident from these examples that the optimal design of molecular building blocks and precise positioning of the nucleobase functionality are essential for fabrication of complex supramolecular assemblies. While a considerable amount of research remains to be explored, our studies have demonstrated the potential of nucleobase-interaction-mediated supramolecular assembly to be a promising field of research enabling the development of biomimetic materials.This Account summarizes recent examples that employ nucleobase interactions to generate functional biomaterials by judicious design of the building blocks. We begin by discussing the molecular recognition properties of different nucleobases, followed by different strategies to employ nucleobase interactions in polymeric systems in order to achieve self-assembled nanomaterials with versatile properties. Moreover, some of their prospective biological/material applications such as enhanced drug encapsulation, superior adhesion, and fast self-healing properties facilitated by complementary nucleobase interactions are emphasized. Finally, we identify issues and challenges that are faced by this class of materials and propose future directions for the exploration of functional materials with the aim of promoting the development of nucleobase-functionalized systems to design the next generation of biomaterials.
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Affiliation(s)
- Amrita Sikder
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, U.K
| | - Cem Esen
- Department of Chemistry, Faculty of Arts and Sciences, Aydın Adnan Menderes University, 09010 Aydın, Turkey
| | - Rachel K O'Reilly
- School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT, U.K
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8
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Giraud T, Hoschtettler P, Pickaert G, Averlant-Petit MC, Stefan L. Emerging low-molecular weight nucleopeptide-based hydrogels: state of the art, applications, challenges and perspectives. NANOSCALE 2022; 14:4908-4921. [PMID: 35319034 DOI: 10.1039/d1nr06131c] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Over the last twenty years, low-molecular weight gelators and, in particular, peptide-based hydrogels, have drawn great attention from scientists thanks to both their inherent advantages in terms of properties and their high modularity (e.g., number and nature of the amino acids). These supramolecular hydrogels originate from specific peptide self-assembly processes that can be driven, modulated and optimized via specific chemical modifications brought to the peptide sequence. Among them, the incorporation of nucleobases, another class of biomolecules well-known for their abilities to self-assemble, has recently appeared as a new promising and burgeoning approach to finely design supramolecular hydrogels. In this minireview, we would like to highlight the interest, high potential, applications and perspectives of these innovative and emerging low-molecular weight nucleopeptide-based hydrogels.
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Affiliation(s)
- Tristan Giraud
- Université de Lorraine, CNRS, LCPM, F-54000 Nancy, France.
| | | | | | | | - Loic Stefan
- Université de Lorraine, CNRS, LCPM, F-54000 Nancy, France.
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9
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Coste M, Suárez-Picado E, Ulrich S. Hierarchical self-assembly of aromatic peptide conjugates into supramolecular polymers: it takes two to tango. Chem Sci 2022; 13:909-933. [PMID: 35211257 PMCID: PMC8790784 DOI: 10.1039/d1sc05589e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 12/10/2021] [Indexed: 12/26/2022] Open
Abstract
Supramolecular polymers are self-assembled materials displaying adaptive and responsive "life-like" behaviour which are often made of aromatic compounds capable of engaging in π-π interactions to form larger assemblies. Major advances have been made recently in controlling their mode of self-assembly, from thermodynamically-controlled isodesmic to kinetically-controlled living polymerization. Dynamic covalent chemistry has been recently implemented to generate dynamic covalent polymers which can be seen as dynamic analogues of biomacromolecules. On the other hand, peptides are readily-available and structurally-rich building blocks that can lead to secondary structures or specific functions. In this context, the past decade has seen intense research activity in studying the behaviour of aromatic-peptide conjugates through supramolecular and/or dynamic covalent chemistries. Herein, we review those impressive key achievements showcasing how aromatic- and peptide-based self-assemblies can be combined using dynamic covalent and/or supramolecular chemistry, and what it brings in terms of the structure, self-assembly pathways, and function of supramolecular and dynamic covalent polymers.
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Affiliation(s)
- Maëva Coste
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
| | - Esteban Suárez-Picado
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
| | - Sébastien Ulrich
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
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10
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Park J, Park J, Lee J, Lim C, Lee DW. Size compatibility and concentration dependent supramolecular host-guest interactions at interfaces. Nat Commun 2022; 13:112. [PMID: 35013244 PMCID: PMC8748952 DOI: 10.1038/s41467-021-27659-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 12/03/2021] [Indexed: 11/30/2022] Open
Abstract
The quantification of supramolecular host-guest interactions is important for finely modulating supramolecular systems. Previously, most host-guest interactions quantified using force spectroscopic techniques have been reported in force units. However, accurately evaluating the adhesion energies of host-guest pairs remains challenging. Herein, using a surface forces apparatus, we directly quantify the interaction energies between cyclodextrin (CD)-modified surfaces and ditopic adamantane (DAd) molecules in water as a function of the DAd concentration and the CD cavity size. The adhesion energy of the β-CD-DAd complex drastically increased with increasing DAd concentration and reached saturation. Moreover, the molecular adhesion energy of a single host-guest inclusion complex was evaluated to be ~9.51 kBT. This approach has potential for quantifying fundamental information toward furthering the understanding of supramolecular chemistry and its applications, such as molecular actuators, underwater adhesives, and biosensors, which require precise tuning of specific host-guest interactions.
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Affiliation(s)
- Jintae Park
- School of Energy & Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Jinwoo Park
- School of Energy & Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Jinhoon Lee
- School of Energy & Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Chanoong Lim
- School of Energy & Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
| | - Dong Woog Lee
- School of Energy & Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
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11
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Coste M, Kotras C, Bessin Y, Gervais V, Dellemme D, Leclercq M, Fossépré M, Richeter S, Clément S, Surin M, Ulrich S. Synthesis, Self‐Assembly, and Nucleic Acid Recognition of an Acylhydrazone‐Conjugated Cationic Tetraphenylethene Ligand. European J Org Chem 2021. [DOI: 10.1002/ejoc.202001420] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Maëva Coste
- IBMM Université de Montpellier, CNRS, ENSCM Montpellier France
| | - Clément Kotras
- ICGM Institut Charles Gerhardt Montpellier UMR 5253 Université de Montpellier CNRS, ENSCM Montpellier France
- Laboratory for Chemistry of Novel Materials Center of Innovation and Research in Materials and Polymers (CIRMAP) University of Mons-UMONS 7000 Mons Belgium
| | - Yannick Bessin
- IBMM Université de Montpellier, CNRS, ENSCM Montpellier France
| | - Virginie Gervais
- CNRS Institut de Pharmacologie et de Biologie Structurale (IPBS) Université de Toulouse, UPS 205 route de Narbonne 31077 Toulouse France
| | - David Dellemme
- Laboratory for Chemistry of Novel Materials Center of Innovation and Research in Materials and Polymers (CIRMAP) University of Mons-UMONS 7000 Mons Belgium
| | - Maxime Leclercq
- Laboratory for Chemistry of Novel Materials Center of Innovation and Research in Materials and Polymers (CIRMAP) University of Mons-UMONS 7000 Mons Belgium
| | - Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials Center of Innovation and Research in Materials and Polymers (CIRMAP) University of Mons-UMONS 7000 Mons Belgium
| | - Sébastien Richeter
- ICGM Institut Charles Gerhardt Montpellier UMR 5253 Université de Montpellier CNRS, ENSCM Montpellier France
| | - Sébastien Clément
- ICGM Institut Charles Gerhardt Montpellier UMR 5253 Université de Montpellier CNRS, ENSCM Montpellier France
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials Center of Innovation and Research in Materials and Polymers (CIRMAP) University of Mons-UMONS 7000 Mons Belgium
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12
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Fossépré M, Tuvi-Arad I, Beljonne D, Richeter S, Clément S, Surin M. Binding Mode Multiplicity and Multiscale Chirality in the Supramolecular Assembly of DNA and a π-Conjugated Polymer. Chemphyschem 2020; 21:2543-2552. [PMID: 32910539 DOI: 10.1002/cphc.202000630] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 09/04/2020] [Indexed: 02/04/2023]
Abstract
Water-soluble π-conjugated polymers are increasingly considered for DNA biosensing. However, the conformational rearrangement, supramolecular organization and dynamics upon interaction with DNA have been overlooked, which prevents the rational design of such detection tools. To elucidate the binding of a cationic polythiophene (CPT) to DNA with atomistic resolution, we performed molecular simulations of their supramolecular assembly. Comparison of replicated simulations show a multiplicity of CPT binding geometries that contribute to the wrapping of CPT around DNA. The different binding geometries are stabilized by both electrostatic interactions between CPT lateral cations and DNA phosphodiesters and van der Waals interactions between the CPT backbone and the DNA grooves. Simulated circular dichroism (CD) spectra show that the induced CD signal stems from a conserved geometrical feature across the replicated simulations, i. e. the presence of segments of syn configurations between thiophene units along the CPT chain. At the macromolecular scale, we inspected the different shapes related to the CPT binding modes around the DNA through symmetry metrics. Altogether, molecular dynamics (MD) simulations, model Hamiltonian calculations of the CD spectra, and symmetry indices provide insights into the origin of induced chirality from the atomic to the macromolecular scale. Our multidisciplinary approach points out the hierarchical aspect of CPT chiral organization induced by DNA.
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Affiliation(s)
- Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons - UMONS, 20 Place du Parc, Mons, 7000, Belgium
| | - Inbal Tuvi-Arad
- Department of Natural Sciences, The Open University of Israel, Raanana, Israel
| | - David Beljonne
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons - UMONS, 20 Place du Parc, Mons, 7000, Belgium
| | | | | | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons - UMONS, 20 Place du Parc, Mons, 7000, Belgium
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13
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Mishra A, Dhiman S, George SJ. ATP‐Driven Synthetic Supramolecular Assemblies: From ATP as a Template to Fuel. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202006614] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Ananya Mishra
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
| | - Shikha Dhiman
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
| | - Subi J. George
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
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14
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Mishra A, Dhiman S, George SJ. ATP‐Driven Synthetic Supramolecular Assemblies: From ATP as a Template to Fuel. Angew Chem Int Ed Engl 2020; 60:2740-2756. [DOI: 10.1002/anie.202006614] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 06/09/2020] [Indexed: 12/15/2022]
Affiliation(s)
- Ananya Mishra
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
| | - Shikha Dhiman
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
| | - Subi J. George
- Supramolecular Chemistry Laboratory New Chemistry Unit School of Advanced Materials (SAMat) Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur Bangalore 560064 India
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15
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Ciferri A. Molecular recognition mechanisms directing the self-assembly of biological structures. SOFT MATTER 2020; 16:8985-8995. [PMID: 33015695 DOI: 10.1039/d0sm01301c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Self-assembling may be defined as the spontaneous association of material units into structures that are often capable of cyclic reorganization and functional behavior. Various molecular recognition processes stabilize assemblies of polymers and biological structures. The present article analyzes cases in which chemical, shape and other recognition mechanisms are individually or cooperatively operative. Simpler self-assembling theories reported in the literature are highlighted. Detailed processes for which chemical recognition is the prevailing, enthalpy-driven, process include the non-ideal component of miscibility, supramolecular polymerization, host-guest complexes and template polymerization. Also discussed are systems such as liquid crystalline closed polymers, ternary mesogenic systems and rigid crystalline polymers for which shape recognition is the prevailing entropy-driven process. Other recognition mechanisms include ion condensation effects, hydrophobic bonding and growth-coupled-to-orientation. Combinations of various recognition mechanisms are particularly evident in biological structures. Self-assembling mechanisms involved in the genesis of some biological systems can be scientifically identified, but much more needs to be known to describe the "engineered" assembling modes that support complex functional organs.
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Affiliation(s)
- Alberto Ciferri
- Chemistry Department, Duke University, DURHAM, NC 27708, USA.
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16
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Jevric J, Langenegger SM, Häner R. Light-Harvesting Supramolecular Polymers: Energy Transfer to Various Polyaromatic Acceptors. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000441] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Jovana Jevric
- Department of Chemistry and Biochemistry; University of Bern; Freiestrasse 3 3012 Bern Switzerland
| | - Simon M. Langenegger
- Department of Chemistry and Biochemistry; University of Bern; Freiestrasse 3 3012 Bern Switzerland
| | - Robert Häner
- Department of Chemistry and Biochemistry; University of Bern; Freiestrasse 3 3012 Bern Switzerland
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17
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del Prado A, González‐Rodríguez D, Wu Y. Functional Systems Derived from Nucleobase Self-assembly. ChemistryOpen 2020; 9:409-430. [PMID: 32257750 PMCID: PMC7110180 DOI: 10.1002/open.201900363] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 03/05/2020] [Indexed: 12/12/2022] Open
Abstract
Dynamic and reversible non-covalent interactions endow synthetic systems and materials with smart adaptive functions that allow them to response to diverse stimuli, interact with external agents, or repair structural defects. Inspired by the outstanding performance and selectivity of DNA in living systems, scientists are increasingly employing Watson-Crick nucleobase pairing to control the structure and properties of self-assembled materials. Two sets of complementary purine-pyrimidine pairs (guanine:cytosine and adenine:thymine(uracil)) are available that provide selective and directional H-bonding interactions, present multiple metal-coordination sites, and exhibit rich redox chemistry. In this review, we highlight several recent examples that profit from these features and employ nucleobase interactions in functional systems and materials, covering the fields of energy/electron transfer, charge transport, adaptive nanoparticles, porous materials, macromolecule self-assembly, or polymeric materials with adhesive or self-healing ability.
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Affiliation(s)
- Anselmo del Prado
- Departamento de Química OrgánicaFacultad de CienciasUniversidad Autónoma de Madrid28049MadridSpain
| | - David González‐Rodríguez
- Departamento de Química OrgánicaFacultad de CienciasUniversidad Autónoma de Madrid28049MadridSpain
- Institute for Advanced Research in Chemical Sciences (IAdChem)Universidad Autónoma de Madrid28049MadridSpain
| | - Yi‐Lin Wu
- School of ChemistryCardiff UniversityPark PlaceCardiffCF10 3ATUK
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18
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Surin M, Ulrich S. From Interaction to Function in DNA-Templated Supramolecular Self-Assemblies. ChemistryOpen 2020; 9:480-498. [PMID: 32328404 PMCID: PMC7175023 DOI: 10.1002/open.202000013] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 03/24/2020] [Indexed: 12/13/2022] Open
Abstract
DNA-templated self-assembly represents a rich and growing subset of supramolecular chemistry where functional self-assemblies are programmed in a versatile manner using nucleic acids as readily-available and readily-tunable templates. In this review, we summarize the different DNA recognition modes and the basic supramolecular interactions at play in this context. We discuss the recent results that report the DNA-templated self-assembly of small molecules into complex yet precise nanoarrays, going from 1D to 3D architectures. Finally, we show their emerging functions as photonic/electronic nanowires, sensors, gene delivery vectors, and supramolecular catalysts, and their growing applications in a wide range of area from materials to biological sciences.
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Affiliation(s)
- Mathieu Surin
- Laboratory for Chemistry of Novel MaterialsCenter of Innovation and Research in Materials and Polymers (CIRMAP)University of Mons-UMONS7000MonsBelgium
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19
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Laroui N, Coste M, Lichon L, Bessin Y, Gary-Bobo M, Pratviel G, Bonduelle C, Bettache N, Ulrich S. Combination of photodynamic therapy and gene silencing achieved through the hierarchical self-assembly of porphyrin-siRNA complexes. Int J Pharm 2019; 569:118585. [DOI: 10.1016/j.ijpharm.2019.118585] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 07/29/2019] [Accepted: 07/30/2019] [Indexed: 12/15/2022]
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20
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Fossépré M, Trévisan ME, Cyriaque V, Wattiez R, Beljonne D, Richeter S, Clément S, Surin M. Detection of the Enzymatic Cleavage of DNA through Supramolecular Chiral Induction to a Cationic Polythiophene. ACS APPLIED BIO MATERIALS 2019; 2:2125-2136. [DOI: 10.1021/acsabm.9b00123] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons (UMONS), 20 Place du Parc, Mons B-7000, Belgium
| | - Marie E. Trévisan
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons (UMONS), 20 Place du Parc, Mons B-7000, Belgium
| | - Valentine Cyriaque
- Proteomics and Microbiology Lab, Research Institute for Biosciences, University of Mons (UMONS), Avenue du Champs de Mars 6, Mons 7000, Belgium
| | - Ruddy Wattiez
- Proteomics and Microbiology Lab, Research Institute for Biosciences, University of Mons (UMONS), Avenue du Champs de Mars 6, Mons 7000, Belgium
| | - David Beljonne
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons (UMONS), 20 Place du Parc, Mons B-7000, Belgium
| | - Sébastien Richeter
- Institut Charles Gerhardt ICGM, UMR 5253 CNRS-ENSCM-UM, Université de Montpellier, CC1701 Place Eugène Bataillon, Montpellier Cedex 05F-34095, France
| | - Sébastien Clément
- Institut Charles Gerhardt ICGM, UMR 5253 CNRS-ENSCM-UM, Université de Montpellier, CC1701 Place Eugène Bataillon, Montpellier Cedex 05F-34095, France
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Centre of Innovation and Research in Materials and Polymers (CIRMAP), University of Mons (UMONS), 20 Place du Parc, Mons B-7000, Belgium
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21
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Hofsäβ R, Ensslen P, Wagenknecht HA. Control of helical chirality in supramolecular chromophore-DNA architectures. Chem Commun (Camb) 2019; 55:1330-1333. [PMID: 30638231 DOI: 10.1039/c8cc08887j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Four different d- and l-configured chromophore-2'-deoxyuridine conjugates were applied to elucidate the helical chirality of their non-covalent assemblies along the d- and l-configured DNA templates by optical spectroscopy. There is no configuration-selective recognition between these nucleosides and the DNA templates. The helicity of the DNA assemblies is either controlled by the configuration of the DNA template or by the nucleoside configuration.
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Affiliation(s)
- Robert Hofsäβ
- Institute of Organic Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany.
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22
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Lueckerath T, Strauch T, Koynov K, Barner-Kowollik C, Ng DYW, Weil T. DNA–Polymer Conjugates by Photoinduced RAFT Polymerization. Biomacromolecules 2018; 20:212-221. [DOI: 10.1021/acs.biomac.8b01328] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thorsten Lueckerath
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Tina Strauch
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Kaloian Koynov
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Christopher Barner-Kowollik
- School of Chemistry, Physics and Mechanical Engineering, Queensland University of Technology (QUT), George Street, Brisbane, Queensland 4000, Australia
- Macromolecular Architectures, Institut für Technische Chemie und Polymerchemie, Karlsruhe Institute of Technology (KIT), Engesserstraße 18, 76131 Karlsruhe, Germany
| | - David Y. W. Ng
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Tanja Weil
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
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23
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Jarroux N, Clément M, Gervais M, Moriau S, Maciejak O, Curmi P, Cheradame H. Templated polycondensation of aminopropyltrimethoxysilane on DNA. Eur Polym J 2018. [DOI: 10.1016/j.eurpolymj.2017.09.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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24
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Evenou P, Rossignol J, Pembouong G, Gothland A, Colesnic D, Barbeyron R, Rudiuk S, Marcelin AG, Ménand M, Baigl D, Calvez V, Bouteiller L, Sollogoub M. Bridging β-Cyclodextrin Prevents Self-Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802550] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Pierre Evenou
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Julien Rossignol
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Gaëlle Pembouong
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Adélie Gothland
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Dmitri Colesnic
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Renaud Barbeyron
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Anne-Geneviève Marcelin
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Mickaël Ménand
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Damien Baigl
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Vincent Calvez
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Laurent Bouteiller
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Matthieu Sollogoub
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
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25
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Evenou P, Rossignol J, Pembouong G, Gothland A, Colesnic D, Barbeyron R, Rudiuk S, Marcelin AG, Ménand M, Baigl D, Calvez V, Bouteiller L, Sollogoub M. Bridging β-Cyclodextrin Prevents Self-Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids. Angew Chem Int Ed Engl 2018; 57:7753-7758. [DOI: 10.1002/anie.201802550] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 03/26/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Pierre Evenou
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Julien Rossignol
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Gaëlle Pembouong
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Adélie Gothland
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Dmitri Colesnic
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Renaud Barbeyron
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Anne-Geneviève Marcelin
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Mickaël Ménand
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Damien Baigl
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Vincent Calvez
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Laurent Bouteiller
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Matthieu Sollogoub
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
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26
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Trévisan M, Fossépré M, Paolantoni D, Rubio-Magnieto J, Dumy P, Ulrich S, Surin M. Self-assembly and chiroptical properties in supramolecular complexes of adenosine phosphates and guanidinium-bispyrene. Chirality 2018; 30:719-729. [PMID: 29578614 DOI: 10.1002/chir.22852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 02/14/2018] [Accepted: 02/16/2018] [Indexed: 11/10/2022]
Abstract
Supramolecular systems that respond to the hydrolysis of adenosine phosphates (APs) are attractive for biosensing and to fabricate bioinspired self-assembled materials. Here, we report on the formation of supramolecular complexes between an achiral guanidinium derivative bearing two pyrene moieties, with each of the three adenosine phosphates: AMP, ADP, and ATP. By combining results from circular dichroism spectroscopy and molecular modeling simulations, we explore the induced chirality, the dynamics of the complexes, and the interactions at play, which altogether provide insights into the supramolecular self-assembly between APs and the guanidinium-bispyrene. Finally, we identify the chiroptical signals of interest in mixtures of the guanidinium derivative with the three APs in different proportions. This study constitutes a basis to evolve toward a chiroptical detection of the hydrolysis of APs based on organic supramolecular probes.
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Affiliation(s)
- Marie Trévisan
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers, University of Mons-UMONS, Mons, Belgium
| | - Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers, University of Mons-UMONS, Mons, Belgium
| | - Delphine Paolantoni
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247), Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Jenifer Rubio-Magnieto
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers, University of Mons-UMONS, Mons, Belgium
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247), Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM, UMR 5247), Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Center of Innovation and Research in Materials and Polymers, University of Mons-UMONS, Mons, Belgium
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27
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Lai G, Luh TY. Polynorbornene-based Template for Polymer Synthesis. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20170354] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Guoqiao Lai
- Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China
| | - Tien-Yau Luh
- Department of Chemistry, National Taiwan University, Taipei 106, Taiwan
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28
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Photomodulation of DNA-Templated Supramolecular Assemblies. Chemistry 2017; 24:706-714. [DOI: 10.1002/chem.201704538] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Indexed: 12/22/2022]
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29
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Gumbs TL, White LJ, Wells NJ, Shepherd HJ, Hiscock JR. ‘Frustrated’ hydrogen-bonded self-associated systems as templates towards DNA incorporated nanostructure formation. Supramol Chem 2017. [DOI: 10.1080/10610278.2017.1351613] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Tamrin L. Gumbs
- Dr J. R. Hiscock, School of Physical Sciences, University of Kent, Canterbury, UK
| | - Lisa J. White
- Dr J. R. Hiscock, School of Physical Sciences, University of Kent, Canterbury, UK
| | - Neil J. Wells
- School of Chemistry, University of Southampton, Southampton, UK
| | - Helena J. Shepherd
- Dr J. R. Hiscock, School of Physical Sciences, University of Kent, Canterbury, UK
| | - Jennifer R. Hiscock
- Dr J. R. Hiscock, School of Physical Sciences, University of Kent, Canterbury, UK
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30
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Bian S, Cai H, Cui Y, He M, Cao W, Chen X, Sun Y, Liang J, Fan Y, Zhang X. Temperature and ion dual responsive biphenyl-dipeptide supramolecular hydrogels as extracellular matrix mimic-scaffolds for cell culture applications. J Mater Chem B 2017; 5:3667-3674. [DOI: 10.1039/c7tb00576h] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Illustration of the gelation process of a new aromatic short peptide gelator based on biphenyl and its application in cell culture.
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Affiliation(s)
- Shaoquan Bian
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Hanxu Cai
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Yani Cui
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Mengmeng He
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Wanxu Cao
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Xuening Chen
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Yong Sun
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Jie Liang
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Yujiang Fan
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
| | - Xingdong Zhang
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- China
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31
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Rubio-Magnieto J, Kumar M, Brocorens P, Idé J, George SJ, Lazzaroni R, Surin M. Chiral supramolecular organization and cooperativity in DNA-templated assemblies of ZnII–chromophore complexes. Chem Commun (Camb) 2016; 52:13873-13876. [DOI: 10.1039/c6cc07414f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Templated cooperative binding induced assembly of chromophores is achieved via interactions between Zn-complexes and the DNA phosphodiester backbone.
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Affiliation(s)
- Jenifer Rubio-Magnieto
- Laboratory for Chemistry of Novel Materials
- Center for Innovation in Materials and Polymers
- University of Mons – UMONS
- B-7000 Mons
- Belgium
| | - Mohit Kumar
- Supramolecular Chemistry Laboratory
- New Chemistry Unit
- Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR)
- Bangalore
- India
| | - Patrick Brocorens
- Laboratory for Chemistry of Novel Materials
- Center for Innovation in Materials and Polymers
- University of Mons – UMONS
- B-7000 Mons
- Belgium
| | - Julien Idé
- Laboratory for Chemistry of Novel Materials
- Center for Innovation in Materials and Polymers
- University of Mons – UMONS
- B-7000 Mons
- Belgium
| | - Subi J. George
- Supramolecular Chemistry Laboratory
- New Chemistry Unit
- Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR)
- Bangalore
- India
| | - Roberto Lazzaroni
- Laboratory for Chemistry of Novel Materials
- Center for Innovation in Materials and Polymers
- University of Mons – UMONS
- B-7000 Mons
- Belgium
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials
- Center for Innovation in Materials and Polymers
- University of Mons – UMONS
- B-7000 Mons
- Belgium
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