1
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Mariconti M, Dechamboux L, Heckmann M, Gros J, Morel M, Escriou V, Baigl D, Hoffmann C, Rudiuk S. Intracellular Delivery of Functional Proteins with DNA-Protein Nanogels-Lipids Complex. J Am Chem Soc 2024; 146:5118-5127. [PMID: 38363821 PMCID: PMC10910493 DOI: 10.1021/jacs.3c08000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 01/29/2024] [Accepted: 01/30/2024] [Indexed: 02/18/2024]
Abstract
Using functional proteins for therapeutic purposes due to their high selectivity and/or catalytic properties can enable the control of various cellular processes; however, the transport of active proteins inside living cells remains a major challenge. In contrast, intracellular delivery of nucleic acids has become a routine method for a number of applications in gene therapy, genome editing, or immunization. Here we report a functionalizable platform constituting of DNA-protein nanogel carriers cross-linked through streptavidin-biotin or streptactin-biotin interactions and demonstrate its applicability for intracellular delivery of active proteins. We show that the nanogels can be loaded with proteins bearing either biotin, streptavidin, or strep-tag, and the resulting functionalized nanogels can be delivered into living cells after complexation with cationic lipid vectors. We use this approach for delivery of alkaline phosphatase enzyme, which is shown to keep its catalytic activity after internalization by mouse melanoma B16 cells, as demonstrated by the DDAO-phosphate assay. The resulting functionalized nanogels have dimensions on the order of 100 nm, contain around 100 enzyme molecules, and are shown to be transfectable at low lipid concentrations (charge ratio R± = 0.75). This ensures the low toxicity of our system, which in combination with high local enzyme concentration (∼100 μM) underlines potential interest of this nanoplatform for biomedical applications.
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Affiliation(s)
- Marina Mariconti
- PASTEUR,
UMR8640, Department of Chemistry, PSL University,
Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005 France
| | | | - Marion Heckmann
- Université
Paris Cité, CNRS, INSERM, UTCBS, Paris 75006, France
| | - Julien Gros
- PASTEUR,
UMR8640, Department of Chemistry, PSL University,
Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005 France
| | - Mathieu Morel
- PASTEUR,
UMR8640, Department of Chemistry, PSL University,
Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005 France
| | | | - Damien Baigl
- PASTEUR,
UMR8640, Department of Chemistry, PSL University,
Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005 France
| | - Céline Hoffmann
- Université
Paris Cité, CNRS, INSERM, UTCBS, Paris 75006, France
| | - Sergii Rudiuk
- PASTEUR,
UMR8640, Department of Chemistry, PSL University,
Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005 France
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2
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Vialetto J, Gaichies T, Rudiuk S, Morel M, Baigl D. Versatile Deposition of Complex Colloidal Assemblies from the Evaporation of Hanging Drops. Adv Sci (Weinh) 2024; 11:e2307893. [PMID: 38102826 PMCID: PMC10870021 DOI: 10.1002/advs.202307893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/22/2023] [Indexed: 12/17/2023]
Abstract
Existing strategies designed to produce ordered arrangements of colloidal particles on solid supports are of great interest for their wide range of applications, from colloidal lithography, plasmonic and biomimetic surfaces to tags for anti-counterfeiting, but they all share various degrees of complexity hampering their facile implementation. Here, a drastically simplified methodology is presented to achieve ordered particle deposition, consisting in adding micromolar amounts of cationic surfactant to a colloidal suspension drop and let it evaporate in an upside-down configuration. Confinement at the air/water interface enables particle assembly into monolayers, which are then transferred on the substrate producing highly ordered structures displaying vivid, orientation-dependent structural colors. The method is compatible with many particle types and substrates, while controlling system parameters allows tuning the deposit size and morphology, from monocrystals to polycrystalline disks and "irises", from single-component to crystal alloys with Moiré patterns, demonstrating its practicality for a variety of processes.
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Affiliation(s)
- Jacopo Vialetto
- PASTEUR, Department of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRSParis75005France
- Department of Chemistry and CSGIUniversity of Florencevia della Lastruccia 3, Sesto FiorentinoFirenzeI‐50019Italy
| | - Théophile Gaichies
- PASTEUR, Department of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRSParis75005France
| | - Sergii Rudiuk
- PASTEUR, Department of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRSParis75005France
| | - Mathieu Morel
- PASTEUR, Department of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRSParis75005France
| | - Damien Baigl
- PASTEUR, Department of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRSParis75005France
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3
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Rossi-Gendron C, El Fakih F, Bourdon L, Nakazawa K, Finkel J, Triomphe N, Chocron L, Endo M, Sugiyama H, Bellot G, Morel M, Rudiuk S, Baigl D. Isothermal self-assembly of multicomponent and evolutive DNA nanostructures. Nat Nanotechnol 2023; 18:1311-1318. [PMID: 37524905 PMCID: PMC10656289 DOI: 10.1038/s41565-023-01468-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 06/26/2023] [Indexed: 08/02/2023]
Abstract
Thermal annealing is usually needed to direct the assembly of multiple complementary DNA strands into desired entities. We show that, with a magnesium-free buffer containing NaCl, complex cocktails of DNA strands and proteins can self-assemble isothermally, at room or physiological temperature, into user-defined nanostructures, such as DNA origamis, single-stranded tile assemblies and nanogrids. In situ, time-resolved observation reveals that this self-assembly is thermodynamically controlled, proceeds through multiple folding pathways and leads to highly reconfigurable nanostructures. It allows a given system to self-select its most stable shape in a large pool of competitive DNA strands. Strikingly, upon the appearance of a new energy minimum, DNA origamis isothermally shift from one initially stable shape to a radically different one, by massive exchange of their constitutive staple strands. This method expands the repertoire of shapes and functions attainable by isothermal self-assembly and creates a basis for adaptive nanomachines and nanostructure discovery by evolution.
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Affiliation(s)
- Caroline Rossi-Gendron
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Farah El Fakih
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Laura Bourdon
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Koyomi Nakazawa
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Julie Finkel
- Centre de Biologie Structurale, Université Montpellier, CNRS, Inserm, Montpellier, France
| | - Nicolas Triomphe
- Centre de Biologie Structurale, Université Montpellier, CNRS, Inserm, Montpellier, France
- Université Grenoble Alpes, CEA, Leti,, Grenoble, France
| | - Léa Chocron
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Masayuki Endo
- Organization for Research and Development of Innovative Science and Technology, Kansai University, Suita, Japan
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Kyoto, Japan
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Yoshida-Ushinomaecho, Kyoto, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Kyoto, Japan
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Yoshida-Ushinomaecho, Kyoto, Japan
| | - Gaëtan Bellot
- Centre de Biologie Structurale, Université Montpellier, CNRS, Inserm, Montpellier, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France.
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4
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Jacková B, Mottet G, Rudiuk S, Morel M, Baigl D. DNA-Encoded Immunoassay in Picoliter Drops: A Minimal Cell-Free Approach. Adv Biol (Weinh) 2023; 7:e2200266. [PMID: 36750732 DOI: 10.1002/adbi.202200266] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 12/21/2022] [Indexed: 02/09/2023]
Abstract
Immunoassays have emerged as indispensable bioanalytical tools but necessitate long preliminary steps for the selection, production, and purification of the antibody(ies) to be used. Here is explored the paradigm shift of creating a rapid and purification-free assay in picoliter drops where the antibody is expressed from coding DNA and its binding to antigens concomitantly characterized in situ. Efficient synthesis in bulk of various functional variable domains of heavy-chain only antibodies (VHH) using reconstituted cell-free expression media, including an anti-green fluorescent protein VHH, is shown first. A microfluidic device is then used to generate monodisperse drops (30 pL) containing all the assay components, including a capture scaffold, onto which the accumulation of VHH:antigen produces a specific fluorescent signal. This allows to assess, in parallel or sequentially at high throughput (500 Hz), the VHH-antigen binding and its specificity in less than 3 h, directly from a VHH-coding DNA, for multiple VHH sequences, various antigens and down to DNA concentrations as low as 12 plasmids per drop. It is anticipated that the ultraminiaturized format, robustness, and programmability of this novel cell-free immunoassay concept will constitute valuable assets in fields as diverse as antibody discovery, point-of-care diagnostics, synthetic biology, and/or bioanalytical assays.
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Affiliation(s)
- Barbara Jacková
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, 75005, France
- Large Molecules Research Platform, Sanofi, Vitry-sur-Seine, 94400, France
| | - Guillaume Mottet
- Large Molecules Research Platform, Sanofi, Vitry-sur-Seine, 94400, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, 75005, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, 75005, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, 75005, France
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5
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Vialetto J, Rudiuk S, Morel M, Baigl D. Photothermally Reconfigurable Colloidal Crystals at a Fluid Interface, a Generic Approach for Optically Tunable Lattice Properties. J Am Chem Soc 2021; 143:11535-11543. [PMID: 34309395 DOI: 10.1021/jacs.1c04220] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Optically addressable colloidal assembly at fluid interfaces is a highly desired component to generate reconfigurable 2D materials but has rarely been achieved and only with specific interface engineering. Here we describe a generic method to get optically reconfigurable colloidal crystals at the air/water interface and emphasize a new mechanism to convert light into tunable lattice properties. We use light-absorbing anionic particles adsorbed at the air/water interface in the presence of minute amounts of cationic surfactant, which self-assembled into closely packed polycrystalline structures by collectively deforming the surrounding interface. Low-intensity irradiation of these colloidal crystals results in unprecedented control of the interparticle spacing in a preserved crystalline state while, at a higher intensity, cycles of melting/recrystallization with a controllable transition kinetics can be achieved upon successive on/off stimulations. We show that this photoreversible melting originates from an initial thermocapillary stress, expanding the colloidal assembly against the local confinement, and an increase in particles diffusivity imposing the transition kinetics. With this mechanism, local irradiation leads to highly dynamic patterns, including self-healing or self-fed "living" crystals, while multiresponsive assembly is also achieved by controlling particle organization with both light and magnetic stimuli.
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Affiliation(s)
- Jacopo Vialetto
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
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6
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Abstract
Hybrid DNA-protein nanogels represent potential protein vectors and enzymatic nanoreactors for modern biotechnology. Here, we describe a new, easy, and robust method for preparation of tunable DNA-protein nanogels with controllable size and density. For this purpose, polymerase chain reaction is used to prepare highly biotinylated DNA as a soft biopolymeric backbone, which can be efficiently cross-linked via streptavidin-biotin binding. This approach enables us to control both the density and size of the resulting nanogels not only by adjusting the amount of the cross-linking streptavidin but also by using different rates of DNA biotinylation. This gives DNA-streptavidin nanogels with the size ranging from 80 nm, for the most compact state, to up to 200 nm. Furthermore, using streptavidin-enzyme conjugates allows the straightforward one-pot incorporation of enzymes during the preparation of the nanogels. Monoenzymatic and multienzymatic nanogels have been obtained in this manner, and their catalytic activities have been characterized. All tested enzymes (alkaline phosphatase (AP), horseradish peroxidase (HRP), and β-galactosidase (βGal)), incorporated individually or in a coupled manner (glucose oxidase (GOx)-HRP cascade), were shown to remain functional. The activities of AP and βGal were unchanged while that of HRP was slightly improved inside the nanogels. We demonstrate that, for HRP, it is not the DNA-to-enzyme ratio but the physical density of the functionalized DNA nanogels that is responsible for the improvement of its enzymatic activity.
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Affiliation(s)
- Marina Mariconti
- PASTEUR, Department of Chemistry, PSL University, Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, PSL University, Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, PSL University, Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, PSL University, Sorbonne Université, CNRS, Ecole Normale Supérieure, Paris 75005, France
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7
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Nakazawa K, El Fakih F, Jallet V, Rossi‐Gendron C, Mariconti M, Chocron L, Hishida M, Saito K, Morel M, Rudiuk S, Baigl D. Frontispiece: Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/anie.202182861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Koyomi Nakazawa
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Farah El Fakih
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Vincent Jallet
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Caroline Rossi‐Gendron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Marina Mariconti
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Léa Chocron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Mafumi Hishida
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Kazuya Saito
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Mathieu Morel
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Damien Baigl
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
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8
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Nakazawa K, El Fakih F, Jallet V, Rossi-Gendron C, Mariconti M, Chocron L, Hishida M, Saito K, Morel M, Rudiuk S, Baigl D. Reversible Supra-Folding of User-Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates. Angew Chem Int Ed Engl 2021; 60:15214-15219. [PMID: 33675576 DOI: 10.1002/anie.202101909] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Indexed: 12/22/2022]
Abstract
We report that user-defined DNA nanostructures, such as two-dimensional (2D) origamis and nanogrids, undergo a rapid higher-order folding transition, referred to as supra-folding, into three-dimensional (3D) compact structures (origamis) or well-defined μm-long ribbons (nanogrids), when they adsorb on a soft cationic substrate prepared by layer-by-layer deposition of polyelectrolytes. Once supra-folded, origamis can be switched back on the surface into their 2D original shape through addition of heparin, a highly charged anionic polyelectrolyte known as an efficient competitor of DNA-polyelectrolyte complexation. Orthogonal to DNA base-pairing principles, this reversible structural reconfiguration is also versatile; we show in particular that 1) it is compatible with various origami shapes, 2) it perfectly preserves fine structural details as well as site-specific functionality, and 3) it can be applied to dynamically address the spatial distribution of origami-tethered proteins.
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Affiliation(s)
- Koyomi Nakazawa
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France.,Department of Chemistry, University of Tsukuba, Tsukuba, Ibaraki, 305-8571, Japan
| | - Farah El Fakih
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Vincent Jallet
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Caroline Rossi-Gendron
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Marina Mariconti
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Léa Chocron
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Mafumi Hishida
- Department of Chemistry, University of Tsukuba, Tsukuba, Ibaraki, 305-8571, Japan
| | - Kazuya Saito
- Department of Chemistry, University of Tsukuba, Tsukuba, Ibaraki, 305-8571, Japan
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
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9
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Nakazawa K, El Fakih F, Jallet V, Rossi‐Gendron C, Mariconti M, Chocron L, Hishida M, Saito K, Morel M, Rudiuk S, Baigl D. Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202101909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Koyomi Nakazawa
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Farah El Fakih
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Vincent Jallet
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Caroline Rossi‐Gendron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Marina Mariconti
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Léa Chocron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Mafumi Hishida
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Kazuya Saito
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Mathieu Morel
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Damien Baigl
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
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10
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Nakazawa K, El Fakih F, Jallet V, Rossi‐Gendron C, Mariconti M, Chocron L, Hishida M, Saito K, Morel M, Rudiuk S, Baigl D. Frontispiz: Reversible Supra‐Folding of User‐Programmed Functional DNA Nanostructures on Fuzzy Cationic Substrates. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202182861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Koyomi Nakazawa
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Farah El Fakih
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Vincent Jallet
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Caroline Rossi‐Gendron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Marina Mariconti
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Léa Chocron
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Mafumi Hishida
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Kazuya Saito
- Department of Chemistry University of Tsukuba Tsukuba Ibaraki 305-8571 Japan
| | - Mathieu Morel
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
| | - Damien Baigl
- PASTEUR Department of Chemistry Ecole Normale Supérieure PSL University Sorbonne Université CNRS 75005 Paris France
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11
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Galy PE, Rudiuk S, Morel M, Baigl D. Self-Propelled Water Drops on Bare Glass Substrates in Air: Fast, Controllable, and Easy Transport Powered by Surfactants. Langmuir 2020; 36:6916-6923. [PMID: 32074453 DOI: 10.1021/acs.langmuir.9b03727] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Self-propelled drops are capable of motion without external intervention. As such, they constitute attractive entities for fundamental investigations in active soft matter, hydrodynamics, and surface sciences, as well as promising systems for autonomous microfluidic operations. In contrast with most of the examples relying on organic drops or specifically treated substrates, here we describe the first system of nonreactive water drops in air that can propel themselves on a commercially available ordinary glass substrate that was used as received. This is achieved by exploiting the dynamic adsorption behavior of common n-alkyltrimethylammonium bromide (CnTAB) surfactants added to the drop. We precisely analyze the drop motion for a broad series of surfactants carrying n = 6 to 18 carbon atoms in their tail and establish how the motion characteristics (speed, probability of motion) are tuned by both the hydrophobicity and the concentration of the surfactant. We show that motion occurs regardless of the n value but only in a specific concentration range with a maximum speed at around one tenth of the critical micelle concentration (CMC/10) for most of the tested surfactants. Surfactants of intermediate hydrophobicity are shown to be the best candidates to power drops that can move at a high speed (1-10 cm s-1), the optimal performance being reached with [C12TAB] = 800 μM. We propose a mechanism where the motion originates from the anisotropic wettability of the substrate created by the electrostatic adsorption of surfactants beneath the moving drop. Simply drawing lines with a marker pen allows us to create guiding paths for drop motion and to achieve operations such as complex trajectory control, programmed drop fusion, drop refilling, as well as drop moving vertically against gravity. This work revisits the role of surfactants in dynamic wetting and self-propelled motion as well as brings an original strategy to build the future of microfluidics with lower-cost, simpler, and more autonomous portable devices that could be made available to everyone and everywhere.
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Affiliation(s)
- Pauline E Galy
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France
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12
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Vialetto J, Rudiuk S, Morel M, Baigl D. From bulk crystallization of inorganic nanoparticles at the air/water interface: tunable organization and intense structural colors. Nanoscale 2020; 12:6279-6284. [PMID: 32037425 DOI: 10.1039/c9nr10965j] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The "flipping method" is a new straightforward way to both adsorb and organize microparticles at a liquid interface, with ultralow amounts of a surfactant and no other external forces than gravity. Here we demonstrate that it allows the adsorption of a variety of inorganic nanoparticles at an air/water interface, in an organized way, which is directly controlled by the surfactant concentration, ranging from amorphous to highly crystalline two-dimensional assemblies. With micromolar amounts of a conventional cationic surfactant (dodecyltrimethylammonium bromide, DTAB), nanoparticles of different compositions (silica, silver, and gold), sizes (down to 100 nm) and shapes (spheres and cubes) adsorb from the bulk and directly organize at the air/water interface, resulting in marked optical properties such as reflectivity or intense structural coloration.
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Affiliation(s)
- Jacopo Vialetto
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Damien Baigl
- PASTEUR, Department of Chemistry, Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
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13
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Law-Hine D, Rudiuk S, Bonestebe A, Ienco R, Huille S, Tribet C. Distinctive Low-Resolution Structural Features of Dimers of Antibody-Drug Conjugates and Parent Antibody Determined by Small-Angle X-ray Scattering. Mol Pharm 2019; 16:4902-4912. [PMID: 31618040 DOI: 10.1021/acs.molpharmaceut.9b00792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Structural features of lysine-conjugated antibody-drug conjugate (ADC) from humanized IgG1 were studied by small-angle X-ray scattering (SAXS). As the physicochemical properties of the cytotoxic drug (payload) and linker may impact the conformational and colloidal stabilities of the conjugated monoclonal antibody (mAb), it is essential to characterize how the conjugation may affect the overall higher order structure and therefore the physical stability and integrity of the ADCs upon storage conditions. Here, the ADC monomer and aggregates generated upon thermal stress were analyzed by high performance liquid chromatography coupled to SAXS with a particular focus on the fraction of dimers (3-10% depending on the storage conditions at 25 and 40 °C). In addition to average parameters such as radius of gyration, molecular weight, and maximal end-to-end distance, the structural information obtained from SAXS patterns were visualized as a low-resolution average envelope of both monomers and dimers (implementation of two methods: ab initio reconstruction and modeling Fab and Fc as rigid bodies with a flexible hinge). We showed that the monomer envelope of the ADC was similar to the corresponding (nonconjugated) parent monoclonal antibody (mAb). ADC dimers appeared more compact and less polydisperse than the dimers of mAb, which was also confirmed by atomic force microscopy. The generated envelopes of the mAb dimers suggest elongated structures with one or few inter-mAb contacts at the outermost region of Fab or Fc domains. The structural features of ADC dimers are independent of the tested pH buffering system (pH 5.0/acetate and pH 6.0/histidine with or without NaCl) and characterized by multiple, tighter contacts between the Fab and Fc domains and distortion of the monomer native shape. Results from the SAXS structural study show in the present case that conjugation has favored innermost inter-ADC contacts in the dimer, which differ from the inter-mAb ones. In general, it is likely that many parameters affect inter-ADC association, including the chemical nature of linkers and drugs, degree of conjugation, conjugation sites, etc. Making a qualitative difference between mAb and ADC dimers as a function of these parameters can help point to the presence of tight associations that must be abolished in protein drug formulations.
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Affiliation(s)
- Didier Law-Hine
- Département de Chimie, PASTEUR, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris 75005, France
| | - Sergii Rudiuk
- Département de Chimie, PASTEUR, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris 75005, France
| | - Audrey Bonestebe
- Biologics Formulation & Process Development, Biologics Development, SANOFI R&D, 13 quai Jules Guesde- BP 14, Vitry-sur-Seine 94403, France
| | - Romain Ienco
- Biologics Formulation & Process Development, Biologics Development, SANOFI R&D, 13 quai Jules Guesde- BP 14, Vitry-sur-Seine 94403, France
| | - Sylvain Huille
- Biologics Formulation & Process Development, Biologics Development, SANOFI R&D, 13 quai Jules Guesde- BP 14, Vitry-sur-Seine 94403, France
| | - Christophe Tribet
- Département de Chimie, PASTEUR, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris 75005, France
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14
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Zhou L, Retailleau P, Morel M, Rudiuk S, Baigl D. Photoswitchable Fluorescent Crystals Obtained by the Photoreversible Coassembly of a Nucleobase and an Azobenzene Intercalator. J Am Chem Soc 2019; 141:9321-9329. [PMID: 31117648 DOI: 10.1021/jacs.9b02836] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Self-assembled nucleobases, such as G-quartets or quadruplexes, have numerous applications, but light-responsive structures are limited to small, noncrystalline motifs. In addition, the assembly of the widely exploited azobenzene photochromic compounds can produce fluorescent crystals of extended dimensions but at the prize of sacrificing their photoswitchability. Here, we overcome inherent limitations of self-assembly with a new concept of supramolecular coassembly leading to materials with unprecedented properties. We show that the coassembly of guanosine monophosphate (GMP) with an azobenzene-containing DNA intercalator produces supramolecular crystals arranged through a combination of π-π, electrostatic, and hydrogen-bond interactions. The resulting crystals are 100 μm long, pH-sensitive, fluorescent, and can be photoreversibly disassembled/reassembled upon UV/blue irradiation. This allows us to perform operations such as dynamic photocontrol of a single-crystal growth, light-gated permeability in membrane-like materials, and photoswitchable fluorescence. We believe this concept critically expands the breadth of multifunctional materials attainable by self-assembly.
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Affiliation(s)
- Li Zhou
- PASTEUR, Department of Chemistry , Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS , Paris 75005 , France
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles , CNRS UPR 2301, Université Paris-Sud, Université Paris-Saclay , 1 av. de la Terrasse , Gif-sur-Yvette 91198 , France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry , Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS , Paris 75005 , France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry , Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS , Paris 75005 , France
| | - Damien Baigl
- PASTEUR, Department of Chemistry , Ecole Normale Supérieure, PSL University, Sorbonne Université, CNRS , Paris 75005 , France
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Affiliation(s)
- Jacopo Vialetto
- PASTEURDepartment of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS 75005 Paris France
| | - Manos Anyfantakis
- PASTEURDepartment of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS 75005 Paris France
- Physics & Materials Science Research UnitUniversity of Luxembourg 162a Avenue de la Faiencerie Luxembourg 1511 Luxembourg
| | - Sergii Rudiuk
- PASTEURDepartment of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS 75005 Paris France
| | - Mathieu Morel
- PASTEURDepartment of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS 75005 Paris France
| | - Damien Baigl
- PASTEURDepartment of ChemistryÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS 75005 Paris France
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16
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Vialetto J, Anyfantakis M, Rudiuk S, Morel M, Baigl D. Photoswitchable Dissipative Two-Dimensional Colloidal Crystals. Angew Chem Int Ed Engl 2019; 58:9145-9149. [PMID: 31041837 DOI: 10.1002/anie.201904093] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Indexed: 11/09/2022]
Abstract
Control over particle interactions and organization at fluid interfaces is of great importance both for fundamental studies and practical applications. Rendering these systems stimulus-responsive is thus a desired challenge both for investigating dynamic phenomena and realizing reconfigurable materials. Here, we describe the first reversible photocontrol of two-dimensional colloidal crystallization at the air/water interface, where millimeter-sized assemblies of microparticles can be actuated through the dynamic adsorption/desorption behavior of a photosensitive surfactant added to the suspension. This allows us to dynamically switch the particle organization between a highly crystalline (under light) and a disordered (in the dark) phase with a fast response time (crystallization in ≈10 s, disassembly in ≈1 min). These results evidence a new kind of dissipative system where the crystalline state can be maintained only upon energy supply.
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Affiliation(s)
- Jacopo Vialetto
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Manos Anyfantakis
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France.,Physics & Materials Science Research Unit, University of Luxembourg, 162a Avenue de la Faiencerie, Luxembourg, 1511, Luxembourg
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
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17
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Hayakawa M, Vialetto J, Anyfantakis M, Takinoue M, Rudiuk S, Morel M, Baigl D. Effect of moderate magnetic fields on the surface tension of aqueous liquids: a reliable assessment. RSC Adv 2019; 9:10030-10033. [PMID: 35520912 PMCID: PMC9062369 DOI: 10.1039/c9ra00849g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 03/23/2019] [Indexed: 11/21/2022] Open
Abstract
We precisely measure the effect of moderate magnetic field intensity on the surface tension of liquids, by placing pendant drops inside uniform fields where bulk forces due to gradients are eliminated. The surface tension of water is unaffected while that of paramagnetic salt solutions slightly decreases with increasing field strength. A novel setup measures the effect of magnetic field intensities on the surface tension of liquids placed inside uniform fields.![]()
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Affiliation(s)
- Masayuki Hayakawa
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
| | - Jacopo Vialetto
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
| | - Manos Anyfantakis
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
| | | | - Sergii Rudiuk
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
| | - Mathieu Morel
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
| | - Damien Baigl
- PASTEUR
- Department of Chemistry
- École Normale Supérieure
- PSL University
- Sorbonne Université
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18
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Evenou P, Rossignol J, Pembouong G, Gothland A, Colesnic D, Barbeyron R, Rudiuk S, Marcelin AG, Ménand M, Baigl D, Calvez V, Bouteiller L, Sollogoub M. Bridging β-Cyclodextrin Prevents Self-Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802550] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Pierre Evenou
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Julien Rossignol
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Gaëlle Pembouong
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Adélie Gothland
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Dmitri Colesnic
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Renaud Barbeyron
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Anne-Geneviève Marcelin
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Mickaël Ménand
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Damien Baigl
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Vincent Calvez
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Laurent Bouteiller
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Matthieu Sollogoub
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
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19
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Evenou P, Rossignol J, Pembouong G, Gothland A, Colesnic D, Barbeyron R, Rudiuk S, Marcelin AG, Ménand M, Baigl D, Calvez V, Bouteiller L, Sollogoub M. Bridging β-Cyclodextrin Prevents Self-Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids. Angew Chem Int Ed Engl 2018; 57:7753-7758. [DOI: 10.1002/anie.201802550] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 03/26/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Pierre Evenou
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Julien Rossignol
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Gaëlle Pembouong
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Adélie Gothland
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Dmitri Colesnic
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Renaud Barbeyron
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Sergii Rudiuk
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Anne-Geneviève Marcelin
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Mickaël Ménand
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Damien Baigl
- PASTEUR; Département de chimie; École normale supérieure; PSL University; Sorbonne Université; CNRS; 75005 Paris France
| | - Vincent Calvez
- Sorbonne Université; INSERM; Institut Pierre Louis d'Epidémiologie et de Santé Publique, UMR 1136; 83 boulevard de l'hôpital 75652 Paris cedex 13 France
| | - Laurent Bouteiller
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
| | - Matthieu Sollogoub
- Sorbonne Université; CNRS; Institut Parisien de Chimie Moléculaire; UMR 8232; 4 place Jussieu 75005 Paris France
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20
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Vialetto J, Hayakawa M, Kavokine N, Takinoue M, Varanakkottu SN, Rudiuk S, Anyfantakis M, Morel M, Baigl D. Rücktitelbild: Magnetic Actuation of Drops and Liquid Marbles Using a Deformable Paramagnetic Liquid Substrate (Angew. Chem. 52/2017). Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201712232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Jacopo Vialetto
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Masayuki Hayakawa
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
- Current address: RIKEN Quantitative Biology Center; Kobe 650-0047 Japan
| | - Nikita Kavokine
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Laboratoire de Physique Statistique; Ecole Normale Supérieure; PSL Research University; 24 rue Lhomond 75005 Paris France
| | - Masahiro Takinoue
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
| | - Subramanyan Namboodiri Varanakkottu
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: School of Nano Science and Technology Calicut; National Institute of Technology; Kozhikode India
| | - Sergii Rudiuk
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: University of Luxembourg; Physics & Materials Science Research Unit; 162a Avenue de la Faiencerie Luxembourg L-1511 Luxembourg
| | - Mathieu Morel
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Damien Baigl
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
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21
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Vialetto J, Hayakawa M, Kavokine N, Takinoue M, Varanakkottu SN, Rudiuk S, Anyfantakis M, Morel M, Baigl D. Back Cover: Magnetic Actuation of Drops and Liquid Marbles Using a Deformable Paramagnetic Liquid Substrate (Angew. Chem. Int. Ed. 52/2017). Angew Chem Int Ed Engl 2017. [DOI: 10.1002/anie.201712232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Jacopo Vialetto
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Masayuki Hayakawa
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
- Current address: RIKEN Quantitative Biology Center; Kobe 650-0047 Japan
| | - Nikita Kavokine
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Laboratoire de Physique Statistique; Ecole Normale Supérieure; PSL Research University; 24 rue Lhomond 75005 Paris France
| | - Masahiro Takinoue
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
| | - Subramanyan Namboodiri Varanakkottu
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: School of Nano Science and Technology Calicut; National Institute of Technology; Kozhikode India
| | - Sergii Rudiuk
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: University of Luxembourg; Physics & Materials Science Research Unit; 162a Avenue de la Faiencerie Luxembourg L-1511 Luxembourg
| | - Mathieu Morel
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Damien Baigl
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
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22
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Vialetto J, Hayakawa M, Kavokine N, Takinoue M, Varanakkottu SN, Rudiuk S, Anyfantakis M, Morel M, Baigl D. Magnetic Actuation of Drops and Liquid Marbles Using a Deformable Paramagnetic Liquid Substrate. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201710668] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Jacopo Vialetto
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Masayuki Hayakawa
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
- Current address: RIKEN Quantitative Biology Center; Kobe 650-0047 Japan
| | - Nikita Kavokine
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Laboratoire de Physique Statistique; Ecole Normale Supérieure; PSL Research University; 24 rue Lhomond 75005 Paris France
| | - Masahiro Takinoue
- Department of Computer Science; Tokyo Institute of Technology; Kanagawa 226-8502 Japan
| | - Subramanyan Namboodiri Varanakkottu
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: School of Nano Science and Technology Calicut; National Institute of Technology; Kozhikode India
| | - Sergii Rudiuk
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
- Current address: University of Luxembourg; Physics & Materials Science Research Unit; 162a Avenue de la Faiencerie Luxembourg L-1511 Luxembourg
| | - Mathieu Morel
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
| | - Damien Baigl
- PASTEUR; Department of chemistry; École Normale Supérieure; UPMC Univ. Paris 06; CNRS; PSL Research University; 75005 Paris France
- Sorbonne Universités; UPMC Univ. Paris 06; École Normale Supérieure; CNRS, PASTEUR; 75005 Paris France
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23
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Vialetto J, Hayakawa M, Kavokine N, Takinoue M, Varanakkottu SN, Rudiuk S, Anyfantakis M, Morel M, Baigl D. Magnetic Actuation of Drops and Liquid Marbles Using a Deformable Paramagnetic Liquid Substrate. Angew Chem Int Ed Engl 2017; 56:16565-16570. [PMID: 29131511 PMCID: PMC5836889 DOI: 10.1002/anie.201710668] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 11/03/2017] [Indexed: 02/06/2023]
Abstract
The magnetic actuation of deposited drops has mainly relied on volume forces exerted on the liquid to be transported, which is poorly efficient with conventional diamagnetic liquids such as water and oil, unless magnetosensitive particles are added. Herein, we describe a new and additive‐free way to magnetically control the motion of discrete liquid entities. Our strategy consists of using a paramagnetic liquid as a deformable substrate to direct, using a magnet, the motion of various floating liquid entities, ranging from naked drops to liquid marbles. A broad variety of liquids, including diamagnetic (water, oil) and nonmagnetic ones, can be efficiently transported using the moderate magnetic field (ca. 50 mT) produced by a small permanent magnet. Complex trajectories can be achieved in a reliable manner and multiplexing potential is demonstrated through on‐demand drop fusion. Our paramagnetofluidic method advantageously works without any complex equipment or electric power, in phase with the necessary development of robust and low‐cost analytical and diagnostic fluidic devices.
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Affiliation(s)
- Jacopo Vialetto
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Masayuki Hayakawa
- Department of Computer Science, Tokyo Institute of Technology, Kanagawa, 226-8502, Japan.,Current address: RIKEN Quantitative Biology Center, Kobe, 650-0047, Japan
| | - Nikita Kavokine
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France.,Laboratoire de Physique Statistique, Ecole Normale Supérieure, PSL Research University, 24 rue Lhomond, 75005, Paris, France
| | - Masahiro Takinoue
- Department of Computer Science, Tokyo Institute of Technology, Kanagawa, 226-8502, Japan
| | - Subramanyan Namboodiri Varanakkottu
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France.,Current address: School of Nano Science and Technology Calicut, National Institute of Technology, Kozhikode, India
| | - Sergii Rudiuk
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Manos Anyfantakis
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France.,Current address: University of Luxembourg, Physics & Materials Science Research Unit, 162a Avenue de la Faiencerie, Luxembourg, L-1511, Luxembourg
| | - Mathieu Morel
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Damien Baigl
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France.,Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005, Paris, France
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24
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Anyfantakis M, Varanakkottu SN, Rudiuk S, Morel M, Baigl D. Evaporative Optical Marangoni Assembly: Tailoring the Three-Dimensional Morphology of Individual Deposits of Nanoparticles from Sessile Drops. ACS Appl Mater Interfaces 2017; 9:37435-37445. [PMID: 28984133 DOI: 10.1021/acsami.7b11547] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We have recently devised the evaporative optical Marangoni assembly (eOMA), a novel and versatile interfacial flow-based method for directing the deposition of colloidal nanoparticles (NPs) on solid substrates from evaporating sessile drops along desired patterns using shaped UV light. Here, we focus on a fixed UV spot irradiation resulting in a cylinder-like deposit of assembled particles and show how the geometrical features of the single deposit can be tailored in three dimensions by simply adjusting the optical conditions or the sample composition, in a quantitative and reproducible manner. Sessile drops containing cationic NPs and a photosensitive surfactant at various concentrations are allowed to evaporate under a single UV beam with a diameter much smaller than that of the drop. After complete evaporation, the geometrical characteristics of the NP deposits are precisely assessed using optical profilometry. We show that both the volume and the radial size of the light-directed NP deposit can be adjusted by varying the diameter or the intensity of the UV beam or alternatively by changing the concentration of the photosensitive surfactant. Notably, in all these cases, the deposits display an almost constant median height corresponding to a few layers of particles. Moreover, both the radial and the axial extent of the patterns are tuned by changing the NP concentration. These results are explained by the correlation among the strength of Marangoni flow, the particle trapping efficiency, and the volume of the deposit, and by the role of evaporation-driven flow in strongly controlling the deposit height. Finally, we extend the versatility of eOMA by demonstrating that NPs down to 30 nm in diameter can be effectively patterned on glass or polymeric substrates.
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Affiliation(s)
- Manos Anyfantakis
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University , 75005 Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005 Paris, France
| | - Subramanyan Namboodiri Varanakkottu
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University , 75005 Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005 Paris, France
- School of Nano Science and Technology, National Institute of Technology Calicut , Kozhikode, India
| | - Sergii Rudiuk
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University , 75005 Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005 Paris, France
| | - Mathieu Morel
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University , 75005 Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005 Paris, France
| | - Damien Baigl
- PASTEUR, Department of chemistry, École Normale Supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University , 75005 Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, École Normale Supérieure, CNRS, PASTEUR, 75005 Paris, France
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25
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Zhou L, Morel M, Rudiuk S, Baigl D. Intramolecularly Protein-Crosslinked DNA Gels: New Biohybrid Nanomaterials with Controllable Size and Catalytic Activity. Small 2017; 13:1700706. [PMID: 28561941 DOI: 10.1002/smll.201700706] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 04/11/2017] [Indexed: 06/07/2023]
Abstract
DNA micro- and nanogels-small-sized hydrogels made of a crosslinked DNA backbone-constitute new promising materials, but their functions have mainly been limited to those brought by DNA. Here a new way is described to prepare sub-micrometer-sized DNA gels of controllable crosslinking density that are able to embed novel functions, such as an enzymatic activity. It consists of using proteins, instead of traditional base-pairing assembly or covalent approaches, to form crosslinks inside individual DNA molecules, resulting in structures referred to as intramolecularly protein-crosslinked DNA gels (IPDGs). It is first shown that the addition of streptavidin to biotinylated T4DNA results in the successful formation of thermally stable IPDGs with a controllable crosslinking density, forming structures ranging from elongated to raspberry-shaped and pearl-necklace-like morphologies. Using reversible DNA condensation strategies, this paper shows that the gels can be reversibly actuated at a low crosslinking density, or further stabilized when they are highly crosslinked. Finally, by using streptavidin-protein conjugates, IPDGs with various enzymes are successfully functionalized. It is demonstrated that the enzymes keep their catalytic activity upon their incorporation into the gels, opening perspectives ranging from biotechnologies (e.g., enzyme manipulation) to nanomedicine (e.g., vectorization).
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Affiliation(s)
- Li Zhou
- PASTEUR, Department of Chemistry, École normale supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, Ecole normale supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Mathieu Morel
- PASTEUR, Department of Chemistry, École normale supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, Ecole normale supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Sergii Rudiuk
- PASTEUR, Department of Chemistry, École normale supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, Ecole normale supérieure, CNRS, PASTEUR, 75005, Paris, France
| | - Damien Baigl
- PASTEUR, Department of Chemistry, École normale supérieure, UPMC Univ. Paris 06, CNRS, PSL Research University, 75005, Paris, France
- Sorbonne Universités, UPMC Univ. Paris 06, Ecole normale supérieure, CNRS, PASTEUR, 75005, Paris, France
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26
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Kavokine N, Anyfantakis M, Morel M, Rudiuk S, Bickel T, Baigl D. Innenrücktitelbild: Light-Driven Transport of a Liquid Marble with and against Surface Flows (Angew. Chem. 37/2016). Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201606705] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Nikita Kavokine
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Mathieu Morel
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Sergii Rudiuk
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Thomas Bickel
- Université de Bordeaux; Laboratoire Ondes et Matière d'Aquitaine, CNRS UMR 5798; 33405 Talence France
| | - Damien Baigl
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
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27
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Devineau S, Anyfantakis M, Marichal L, Kiger L, Morel M, Rudiuk S, Baigl D. Protein Adsorption and Reorganization on Nanoparticles Probed by the Coffee-Ring Effect: Application to Single Point Mutation Detection. J Am Chem Soc 2016; 138:11623-32. [DOI: 10.1021/jacs.6b04833] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Stéphanie Devineau
- Ecole normale supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Department
of Chemistry, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Manos Anyfantakis
- Ecole normale supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Department
of Chemistry, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Laurent Marichal
- LIONS, NIMBE,
CEA, CNRS, Université Paris-Saclay, CEA Saclay, 91191 Gif sur Yvette, France
| | - Laurent Kiger
- IMRB-INSERM U955, 5 rue Gustave Eiffel, 94017 Creteil Cedex, France
| | - Mathieu Morel
- Ecole normale supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Department
of Chemistry, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Sergii Rudiuk
- Ecole normale supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Department
of Chemistry, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Damien Baigl
- Ecole normale supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Department
of Chemistry, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
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28
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Kavokine N, Anyfantakis M, Morel M, Rudiuk S, Bickel T, Baigl D. Inside Back Cover: Light-Driven Transport of a Liquid Marble with and against Surface Flows (Angew. Chem. Int. Ed. 37/2016). Angew Chem Int Ed Engl 2016. [DOI: 10.1002/anie.201606705] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Nikita Kavokine
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Mathieu Morel
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Sergii Rudiuk
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Thomas Bickel
- Université de Bordeaux; Laboratoire Ondes et Matière d'Aquitaine, CNRS UMR 5798; 33405 Talence France
| | - Damien Baigl
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
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29
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Kavokine N, Anyfantakis M, Morel M, Rudiuk S, Bickel T, Baigl D. Light-Driven Transport of a Liquid Marble with and against Surface Flows. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201603639] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Nikita Kavokine
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Mathieu Morel
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Sergii Rudiuk
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Thomas Bickel
- Université de Bordeaux; Laboratoire Ondes et Matière d'Aquitaine, CNRS UMR 5798; 33405 Talence France
| | - Damien Baigl
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
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30
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Kavokine N, Anyfantakis M, Morel M, Rudiuk S, Bickel T, Baigl D. Light-Driven Transport of a Liquid Marble with and against Surface Flows. Angew Chem Int Ed Engl 2016; 55:11183-7. [DOI: 10.1002/anie.201603639] [Citation(s) in RCA: 108] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Nikita Kavokine
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Manos Anyfantakis
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Mathieu Morel
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Sergii Rudiuk
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
| | - Thomas Bickel
- Université de Bordeaux; Laboratoire Ondes et Matière d'Aquitaine, CNRS UMR 5798; 33405 Talence France
| | - Damien Baigl
- Ecole Normale Supérieure; PSL Research University; UPMC Univ Paris 06, CNRS, Department of Chemistry, PASTEUR; 24 rue Lhomond 75005 Paris France
- Sorbonne Universités, UPMC Univ Paris 06; ENS, CNRS, PASTEUR; 75005 Paris France
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Abstract
DNA origami is a powerful method to fold DNA into rationally designed nanostructures that holds great promise for bionanotechnology. However, the folding mechanism has yet to be fully resolved, principally due to a lack of data with single molecule resolution. To address this issue, we have investigated in detail, using atomic force microscopy, the morphological evolution of hundreds of individual rectangular origamis in solution as a function of temperature. Significant structural changes were observed between 65 and 55 °C both for folding and melting, and six structural intermediates were identified. Under standard conditions, folding was initiated at the edges of the rectangle and progressed toward the center. Melting occurred through the reverse pathway until the structures were significantly disrupted but ended through a different pathway involving out-of-equilibrium chainlike structures. Increasing the relative concentration of center to edge staples dramatically modified the folding pathway to a mechanism progressing from the center toward the edges. These results indicate that the folding pathway is determined by thermodynamics and suggest a way of controlling it.
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Affiliation(s)
- Jonathan Lee Tin Wah
- Laboratoire Jean Perrin, Université Pierre et Marie Curie , 4 place Jussieu, 75005 Paris, France
- CNRS, UMR 8237, 75005 Paris, France
| | - Christophe David
- Laboratoire de photonique et de nanostructures, CNRS, route de Nozay, 91460 Marcoussis, France
| | - Sergii Rudiuk
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 Rue Lhomond, 75005 Paris, France
- Sorbonne Universités , UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - Damien Baigl
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 Rue Lhomond, 75005 Paris, France
- Sorbonne Universités , UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - André Estevez-Torres
- Laboratoire Jean Perrin, Université Pierre et Marie Curie , 4 place Jussieu, 75005 Paris, France
- CNRS, UMR 8237, 75005 Paris, France
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Varanakkottu SN, Anyfantakis M, Morel M, Rudiuk S, Baigl D. Light-Directed Particle Patterning by Evaporative Optical Marangoni Assembly. Nano Lett 2016; 16:644-50. [PMID: 26630478 DOI: 10.1021/acs.nanolett.5b04377] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Controlled particle deposition on surfaces is crucial for both exploiting collective properties of particles and their integration into devices. Most available methods depend on intrinsic properties of either the substrate or the particles to be deposited making them difficult to apply to complex, naturally occurring or industrial formulations. Here we describe a new strategy to pattern particles from an evaporating drop, regardless of inherent particle characteristics and suspension composition. We use light to generate Marangoni surface stresses resulting in flow patterns that accumulate particles at predefined positions. Using projected images, we generate a broad variety of complex patterns, including multiple spots, lines and letters. Strikingly, this method, which we call evaporative optical Marangoni assembly (eOMA), allows us to pattern particles regardless of their size or surface properties, in model suspensions as well as in complex, real-world formulations such as commercial coffee.
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Affiliation(s)
- Subramanyan Namboodiri Varanakkottu
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, F-75005, Paris, France
- UPMC Univ Paris 06, PASTEUR, Sorbonne Universités , F-75005, Paris, France
- UMR 8640 PASTEUR, CNRS , F-75005, Paris, France
| | - Manos Anyfantakis
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, F-75005, Paris, France
- UPMC Univ Paris 06, PASTEUR, Sorbonne Universités , F-75005, Paris, France
- UMR 8640 PASTEUR, CNRS , F-75005, Paris, France
| | - Mathieu Morel
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, F-75005, Paris, France
- UPMC Univ Paris 06, PASTEUR, Sorbonne Universités , F-75005, Paris, France
- UMR 8640 PASTEUR, CNRS , F-75005, Paris, France
| | - Sergii Rudiuk
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, F-75005, Paris, France
- UPMC Univ Paris 06, PASTEUR, Sorbonne Universités , F-75005, Paris, France
- UMR 8640 PASTEUR, CNRS , F-75005, Paris, France
| | - Damien Baigl
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, F-75005, Paris, France
- UPMC Univ Paris 06, PASTEUR, Sorbonne Universités , F-75005, Paris, France
- UMR 8640 PASTEUR, CNRS , F-75005, Paris, France
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Bergen A, Rudiuk S, Morel M, Le Saux T, Ihmels H, Baigl D. Photodependent Melting of Unmodified DNA Using a Photosensitive Intercalator: A New and Generic Tool for Photoreversible Assembly of DNA Nanostructures at Constant Temperature. Nano Lett 2016; 16:773-80. [PMID: 26652690 DOI: 10.1021/acs.nanolett.5b04762] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
External control of DNA melting and hybridization, a key step in bio- and DNA nanotechnology, is commonly achieved with temperature. The use of light to direct this process is a challenging alternative, which has been only possible with a DNA modification, such as covalent grafting or mismatch introduction, so far. Here we describe the first photocontrol of DNA melting that relies on the addition of a molecule that noncovalently interacts with unmodified DNA and affects its melting properties in a photoreversible and highly robust manner, without any prerequisite in the length or sequence of the target DNA molecule. We synthesize azobenzene-containing guanidinium derivatives and show that a bivalent molecule with a conformation-dependent binding mode, AzoDiGua, strongly increases the melting temperature (Tm) of DNA under dark conditions because its trans isomer intercalates in the DNA double helix. Upon UV irradiation at 365 nm, the trans-cis isomerization induced the ejection of AzoDiGua from the intercalation binding sites, resulting in a decrease in Tm up to 18 °C. This illumination-dependent Tm shift is observed on many types of DNA, from self-complementary single-stranded or double-stranded oligonucleotides to long genomic duplex DNA molecules. Finally, we show that simply adding AzoDiGua allows us to photoreversibly control the assembly/disassembly of a DNA nanostructure at constant temperature, as demonstrated here with a self-hybridized DNA hairpin. We anticipate that this strategy will be the key ingredient in a new and generic way of placing DNA-based bio- and nanotechnologies under dynamic control by light.
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Affiliation(s)
- Anna Bergen
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - Sergii Rudiuk
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - Mathieu Morel
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - Thomas Le Saux
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
| | - Heiko Ihmels
- Department of Chemistry-Biology, University of Siegen , Adolf-Reichwein-Str. 2, 57068 Siegen, Germany
| | - Damien Baigl
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University , 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, 75005 Paris, France
- CNRS, UMR 8640 PASTEUR, 75005 Paris, France
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Nurdin L, Venancio-Marques A, Rudiuk S, Morel M, Baigl D. High-throughput photocontrol of water drop generation, fusion, and mixing in a dual flow-focusing microfluidic device. CR CHIM 2016. [DOI: 10.1016/j.crci.2015.07.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Anyfantakis M, Geng Z, Morel M, Rudiuk S, Baigl D. Modulation of the coffee-ring effect in particle/surfactant mixtures: the importance of particle-interface interactions. Langmuir 2015; 31:4113-20. [PMID: 25797472 DOI: 10.1021/acs.langmuir.5b00453] [Citation(s) in RCA: 121] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
We study the effect of surfactants on the deposits formed after the evaporation of colloidal suspension drops, at initial concentrations lower than the critical micellar concentrations, for various particle/surfactant mixtures. We show that the surfactant-mediated interactions between particles and the liquid-gas (LG) and liquid-solid (LS) interfaces, rather than the flow patterns, primarily define the morphology of the dry deposit in a robust and reproducible manner. For like-charged particle/surfactant mixtures, most of the particles form a ring-shaped deposit (according to the so-called "Coffee-Ring Effect"), but some particles can also be deposited inside the ring in a way that is modulated by electrostatic interactions between the particles and the LS interface. For oppositely charged systems, surfactant adsorption to the particle surface strongly affects particle-LG interface interactions, which in turn control the deposition pattern. For low surfactant concentrations, coffee-rings are systematically observed. For intermediate concentrations, the charge of surfactant-decorated particles becomes nearly neutral, and their hydrophobicity is enhanced, which promotes particle trapping at the LG interface. A particle skin is formed and its deposition upon drying leads to homogeneous disk-like patterns. For high surfactant concentrations, particle charge is reversed, and coffee-rings are observed again. Notably, this ring-disk-ring evolution of the deposition behavior as a function of surfactant concentration is observed in a variety of mixtures, regardless of particle absolute charge and surface chemistry as well as of surfactant charge and hydrophobicity. Its apparent universal character makes it a promising strategy for a robust control of particle deposition from evaporating drops.
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Affiliation(s)
- Manos Anyfantakis
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University, 24 rue Lhomond, F-75005, Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, F-75005, Paris, France
- CNRS, UMR 8640 PASTEUR, F-75005, Paris, France
| | - Zheng Geng
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University, 24 rue Lhomond, F-75005, Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, F-75005, Paris, France
- CNRS, UMR 8640 PASTEUR, F-75005, Paris, France
| | - Mathieu Morel
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University, 24 rue Lhomond, F-75005, Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, F-75005, Paris, France
- CNRS, UMR 8640 PASTEUR, F-75005, Paris, France
| | - Sergii Rudiuk
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University, 24 rue Lhomond, F-75005, Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, F-75005, Paris, France
- CNRS, UMR 8640 PASTEUR, F-75005, Paris, France
| | - Damien Baigl
- Department of Chemistry, Ecole Normale Supérieure-PSL Research University, 24 rue Lhomond, F-75005, Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, PASTEUR, F-75005, Paris, France
- CNRS, UMR 8640 PASTEUR, F-75005, Paris, France
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Venancio-Marques A, Bergen A, Rossi-Gendron C, Rudiuk S, Baigl D. Photosensitive polyamines for high-performance photocontrol of DNA higher-order structure. ACS Nano 2014; 8:3654-3663. [PMID: 24580129 DOI: 10.1021/nn500266b] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Polyamines are small, ubiquitous, positively charged molecules that play an essential role in numerous biological processes such as DNA packaging, gene regulation, neuron activity, and cell proliferation. Here, we synthesize the first series of photosensitive polyamines (PPAs) and demonstrate their ability to photoreversibly control nanoscale DNA higher-order structure with high efficiency. We show with fluorescence microscopy imaging that the efficiency of the PPAs as DNA-compacting agents is directly correlated to their molecular charge. Micromolar concentration of the most efficient molecule described here, a PPA containing three charges at neutral pH, compacts DNA molecules from a few kilobase pairs to a few hundred kilobase pairs, while subsequent 3 min UV illuminations at 365 nm triggers complete unfolding of DNA molecules. Additional application of blue light (440 nm for 3 min) induces the refolding of DNA into the compact state. Atomic force microscopy reveals that the compaction involves a global folding of the whole DNA molecule, whereas UV-induced unfolding is a modification initiated from the periphery of the compacted DNA, resulting in the occurrence of intermediate flower-like structures prior to the fully unfolded state.
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Affiliation(s)
- Anna Venancio-Marques
- Ecole Normale Supérieure-PSL Research University , Department of Chemistry, 24 Rue Lhomond, F-75005, Paris, France
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Mani NK, Rudiuk S, Baigl D. Spatially controlled DNA unzipping by microfluidic interface positioning on a molecule perpendicular to a multicomponent flow. Chem Commun (Camb) 2013; 49:6858-60. [DOI: 10.1039/c3cc44016h] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Rudiuk S, Venancio-Marques A, Baigl D. Enhancement and modulation of enzymatic activity through higher-order structural changes of giant DNA-protein multibranch conjugates. Angew Chem Int Ed Engl 2012; 51:12694-8. [PMID: 23143988 DOI: 10.1002/anie.201206962] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2012] [Revised: 10/02/2012] [Indexed: 11/06/2022]
Affiliation(s)
- Sergii Rudiuk
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France
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Rudiuk S, Venancio-Marques A, Baigl D. Enhancement and Modulation of Enzymatic Activity through Higher-Order Structural Changes of Giant DNA-Protein Multibranch Conjugates. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201206962] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Diguet A, Yanagisawa M, Liu YJ, Brun E, Abadie S, Rudiuk S, Baigl D. UV-induced bursting of cell-sized multicomponent lipid vesicles in a photosensitive surfactant solution. J Am Chem Soc 2012; 134:4898-904. [PMID: 22316240 PMCID: PMC3303198 DOI: 10.1021/ja211664f] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We study the behavior of multicomponent giant unilamellar vesicles (GUVs) in the presence of AzoTAB, a photosensitive surfactant. GUVs are made of an equimolar ratio of dioleoylphosphatidylcholine (DOPC) and dipalmitoylphosphatidylcholine (DPPC) and various amounts of cholesterol (Chol), where the lipid membrane shows a phase separation into a DPPC-rich liquid-ordered (L(o)) phase and a DOPC-rich liquid-disordered (L(d)) phase. We find that UV illumination at 365 nm for 1 s induces the bursting of a significant fraction of the GUV population. The percentage of UV-induced disrupted vesicles, called bursting rate (Y(burst)), increases with an increase in [AzoTAB] and depends on [Chol] in a non-monotonous manner. Y(burst) decreases when [Chol] increases from 0 to 10 mol % and then increases with a further increase in [Chol], which can be correlated with the phase composition of the membrane. We show that Y(burst) increases with the appearance of solid domains ([Chol] = 0) or with an increase in area fraction of L(o) phase (with increasing [Chol] ≥ 10 mol %). Under our conditions (UV illumination at 365 nm for 1 s), maximal bursting efficiency (Y(burst) = 53%) is obtained for [AzoTAB] = 1 mM and [Chol] = 40 mol %. Finally, by restricting the illumination area, we demonstrate the first selective UV-induced bursting of individual target GUVs. These results show a new method to probe biomembrane mechanical properties using light as well as pave the way for novel strategies of light-induced drug delivery.
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Affiliation(s)
- Antoine Diguet
- Department of Chemistry, Ecole Normale Supérieure, 24 rue Lhomond, 75005 Paris, France
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Rudiuk S, Yoshikawa K, Baigl D. Enhancement of DNA compaction by negatively charged nanoparticles: effect of nanoparticle size and surfactant chain length. J Colloid Interface Sci 2011; 368:372-7. [PMID: 22071517 DOI: 10.1016/j.jcis.2011.10.033] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2011] [Revised: 10/12/2011] [Accepted: 10/13/2011] [Indexed: 11/29/2022]
Abstract
We study the compaction of genomic DNA by a series of alkyltrimethylammonium bromide surfactants having different hydrocarbon chain lengths n: dodecyl-(DTAB, n=12), tetradecyl-(TTAB, n=14) and hexadecyl-(CTAB, n=16), in the absence and in the presence of negatively charged silica nanoparticles (NPs) with a diameter in the range 15-100 nm. We show that NPs greatly enhance the ability of all cationic surfactants to induce DNA compaction and that this enhancement increases with an increase in NP diameter. In the absence of NP, the ability of cationic surfactants to induce DNA compaction increases with an increase in n. Conversely, in the presence of NPs, the enhancement of DNA compaction increases with a decrease in n. Therefore, although CTAB is the most efficient surfactant to compact DNA, maximal enhancement by NPs is obtained for the largest NP diameter (here, 100 nm) and the smallest surfactant chain length (here, DTAB). We suggest a mechanism where the preaggregation of surfactants on NP surface mediated by electrostatic interactions promotes cooperative binding to DNA and thus enhances the ability of surfactants to compact DNA. We show that the amplitude of enhancement is correlated with the difference between the surfactant concentration corresponding to aggregation on DNA alone and that corresponding to the onset of adsorption on nanoparticles.
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Affiliation(s)
- Sergii Rudiuk
- Department of Physics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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Rudiuk S, Saito H, Hara T, Inoue T, Yoshikawa K, Baigl D. Light-Regulated mRNA Condensation by a Photosensitive Surfactant Works as a Series Photoswitch of Translation Activity in the Presence of Small RNAs. Biomacromolecules 2011; 12:3945-51. [DOI: 10.1021/bm200962s] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Sergii Rudiuk
- Department of Physics, Graduate
School of Science, Kyoto University, Kyoto
606-8502, Japan
| | - Hirohide Saito
- Laboratory
of Gene Biodynamics,
Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan
| | - Tomoaki Hara
- Laboratory
of Gene Biodynamics,
Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan
| | - Tan Inoue
- Laboratory
of Gene Biodynamics,
Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan
| | - Kenichi Yoshikawa
- Department of Physics, Graduate
School of Science, Kyoto University, Kyoto
606-8502, Japan
| | - Damien Baigl
- Department of Chemistry, Ecole Normale Supérieure, 75005 Paris, France
- Université Pierre et Marie Curie − Paris 6, 75005 Paris,
France
- UMR 8640, CNRS, Paris, France
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Rudiuk S, Franceschi-Messant S, Chouini-Lalanne N, Perez E, Rico-Lattes I. DNA Photo-oxidative Damage Hazard in Transfection Complexes. Photochem Photobiol 2010; 87:103-8. [DOI: 10.1111/j.1751-1097.2010.00831.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Rudiuk S, Delample M, Franceschi-Messant S, Chouini-Lalanne N, Perez E, Garrigues JC, Rico-Lattes I. Spontaneous Vesicle Formation by Caffeate Ion-Pair Surfactants: Antioxidant Properties and Application to DNA Protection. J DISPER SCI TECHNOL 2010. [DOI: 10.1080/01932690903199452] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Rudiuk S, Franceschi-Messant S, Chouini-Lalanne N, Perez E, Rico-Lattes I. Modulation of photo-oxidative DNA damage by cationic surfactant complexation. Langmuir 2008; 24:8452-8457. [PMID: 18637698 DOI: 10.1021/la800751k] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The natural packaging of DNA in the cell by histones provides a particular environment affecting its sensitivity to oxidative damage. In this work, we used the complexation of DNA by cationic surfactants to modulate the conformation, the dynamics, and the environment of the double helix. Photo-oxidative damage initiated by benzophenone as the photosensitizer on a plasmid DNA complexed by dodecyltrimethylammonium chloride (DTAC), tetradecyltrimethylammonium chloride (TTAC), cetyltrimethyammonium chloride (CTAC) and bromide (CTAB) was detected by agarose gel electrophoresis. By fluorescent titration in the presence of ethidium bromide (EB) and agarose gel electrophoresis, we experimentally confirmed the complexation diagrams with a critical aggregation concentration on DNA matrix (CAC DNA) delimiting two regions of complexation, according to the DNA-phosphate concentration. The study of the photo-oxidative damage shows, for the first time, a direct correlation between the DNA complexation by these surfactants and the efficiency of DNA cleavage, with a maximum corresponding to the CAC DNA for DTAC and CTAC, and to DNA neutralization for CTAC and CTAB. The localization of a photosensitizer having low water solubility, such as benzophenone, inside the hydrophobic domains formed by the surfactant aggregated on DNA, locally increases the photoinduced cleavage by the free radical oxygen species generated. The inefficiency of a water-soluble quencher of hydroxyl radicals, such as mannitol, confirmed this phenomenon. The detection of photo-oxidative damage constitutes a new tool for investigating DNA complexation by cationic surfactants. Moreover, highlighting the drastically increased sensitivity of a complexed DNA to photo-oxidative damage is of crucial importance for the biological use of surfactants as nonviral gene delivery systems.
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Affiliation(s)
- Sergii Rudiuk
- Laboratoire des IMRCP UMR 5623 CNRS, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse, France
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Rudiuk S, Voitenko Z, Riabov S, Roshal A. Molecular complexes of 4,10-dihydrothieno[3′,2′:5,6]pyrimido[2,1-a]isoindol-4-ones with β-cyclodextrin. J INCL PHENOM MACRO 2007. [DOI: 10.1007/s10847-006-9227-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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