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Behnoudfar D, Simon CM, Schrier J. Data-Driven Imputation of Miscibility of Aqueous Solutions via Graph-Regularized Logistic Matrix Factorization. J Phys Chem B 2023; 127:7964-7973. [PMID: 37682958 DOI: 10.1021/acs.jpcb.3c03789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/10/2023]
Abstract
Aqueous, two-phase systems (ATPSs) may form upon mixing two solutions of independently water-soluble compounds. Many separation, purification, and extraction processes rely on ATPSs. Predicting the miscibility of solutions can accelerate and reduce the cost of the discovery of new ATPSs for these applications. Whereas previous machine learning approaches to ATPS prediction used physicochemical properties of each solute as a descriptor, in this work, we show how to impute missing miscibility outcomes directly from an incomplete collection of pairwise miscibility experiments. We use graph-regularized logistic matrix factorization (GR-LMF) to learn a latent vector of each solution from (i) the observed entries in the pairwise miscibility matrix and (ii) a graph where each node is a solution and edges are relationships indicating the general category of the solute (i.e., polymer, surfactant, salt, protein). For an experimental data set of the pairwise miscibility of 68 solutions from Peacock et al. [ACS Appl. Mater. Interfaces 2021, 13, 11449-11460], we find that GR-LMF more accurately predicts missing (im)miscibility outcomes of pairs of solutions than ordinary logistic matrix factorization and random forest classifiers that use physicochemical features of the solutes. GR-LMF obviates the need for features of the solutions and solutions to impute missing miscibility outcomes, but it cannot predict the miscibility of a new solution without some observations of its miscibility with other solutions in the training data set.
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Affiliation(s)
- Diba Behnoudfar
- School of Chemical, Biological, and Environmental Engineering, Oregon State University, Corvallis, Oregon 97331, United States
| | - Cory M Simon
- School of Chemical, Biological, and Environmental Engineering, Oregon State University, Corvallis, Oregon 97331, United States
| | - Joshua Schrier
- Department of Chemistry, Fordham University, The Bronx, New York 10458, United States
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2
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Chairez-Cantu K, González-González M, Rito-Palomares M. Generation of polyethylene glycol-dextran aqueous two-phase system droplets using different culture media under in vitro conditions. FOOD AND BIOPRODUCTS PROCESSING 2023. [DOI: 10.1016/j.fbp.2023.03.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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3
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Cheng Q, Chen J, Wan C, Song Y, Huang C. Preparation of Janus Droplets and Hydrogels with Controllable Morphologies by an Aqueous Two-Phase System on the Superamphiphobic Surface. ACS APPLIED MATERIALS & INTERFACES 2022; 14:50434-50443. [PMID: 36300357 DOI: 10.1021/acsami.2c16704] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Janus particles, having the property integration of each component, have attracted increasing attention due to their considerable potential in the field of material engineering applications. However, organic solvents or sophisticated equipment during the fabrication processes is generally inevitable. Here, we report a facile route to prepare Janus droplets and hydrogels via aqueous two-phase systems (ATPS). Simply merging two polymers, i.e., polyethylene glycol (PEG) and dextran (DEX), as aqueous droplets on a superamphiphobic surface leads to phase separation, provided that their concentrations exceed the threshold in the mixed aqueous droplets, thus generating a Janus structure. Various morphologies of such Janus droplets can be well controlled by manipulating the locations of these two polymers' concentration on the phase diagram, and the evolution of the mixed droplets are deterministic on the basis of the kinetics of their phase separation and the degree of hydrophobicity of the substrate. Introducing monomers and/or nanoparticles, further, into a certain phase of the ATPS droplet followed by photopolymerizing enables Janus hydrogel particles with diverse functionalities to be obtained. The ease and green techniques with which the Janus balance and curvature between two phases of the Janus droplet can be finely tuned point to new directions in designing Janus particles and hold great promises in biological engineering.
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Affiliation(s)
- Quanyong Cheng
- Key Lab of Materials Chemistry for Energy Conversion and Storage of Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, People's Republic of China
| | - Jingyi Chen
- Key Lab of Materials Chemistry for Energy Conversion and Storage of Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, People's Republic of China
| | - Chuchu Wan
- Key Lab of Materials Chemistry for Energy Conversion and Storage of Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, People's Republic of China
| | - Yuhang Song
- Key Lab of Materials Chemistry for Energy Conversion and Storage of Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, People's Republic of China
| | - Caili Huang
- Key Lab of Materials Chemistry for Energy Conversion and Storage of Ministry of Education, School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology (HUST), Wuhan, 430074, People's Republic of China
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Zhou C, Zhu P, Tian Y, Shi R, Wang L. Progress in all-aqueous droplets generation with microfluidics: Mechanisms of formation and stability improvements. BIOPHYSICS REVIEWS 2022; 3:021301. [PMID: 38505416 PMCID: PMC10914135 DOI: 10.1063/5.0054201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Accepted: 01/27/2022] [Indexed: 03/21/2024]
Abstract
All-aqueous systems have attracted intensive attention as a promising platform for applications in cell separation, protein partitioning, and DNA extraction, due to their selective separation capability, rapid mass transfer, and good biocompatibility. Reliable generation of all-aqueous droplets with accurate control over their size and size distribution is vital to meet the increasingly growing demands in emulsion-based applications. However, the ultra-low interfacial tension and large effective interfacial thickness of the water-water interface pose challenges for the generation and stabilization of uniform all-aqueous droplets, respectively. Microfluidics technology has emerged as a versatile platform for the precision generation of all-aqueous droplets with improved stability. This review aims to systematize the controllable generation of all-aqueous droplets and summarize various strategies to improve their stability with microfluidics. We first provide a comprehensive review on the recent progress of all-aqueous droplets generation with microfluidics by detailing the properties of all-aqueous systems, mechanisms of droplet formation, active and passive methods for droplet generation, and the property of droplets. We then review the various strategies used to improve the stability of all-aqueous droplets and discuss the fabrication of biomaterials using all-aqueous droplets as liquid templates. We envision that this review will benefit the future development of all-aqueous droplet generation and its applications in developing biomaterials, which will be useful for researchers working in the field of all-aqueous systems and those who are new and interested in the field.
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Affiliation(s)
| | - Pingan Zhu
- Department of Mechanical Engineering, City University of Hong Kong, Hong Kong, China
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Ahmed T, Yamanishi C, Kojima T, Takayama S. Aqueous Two-Phase Systems and Microfluidics for Microscale Assays and Analytical Measurements. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2021; 14:231-255. [PMID: 33950741 DOI: 10.1146/annurev-anchem-091520-101759] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Phase separation is a common occurrence in nature. Synthetic and natural polymers, salts, ionic liquids, surfactants, and biomacromolecules phase separate in water, resulting in an aqueous two-phase system (ATPS). This review discusses the properties, handling, and uses of ATPSs. These systems have been used for protein, nucleic acid, virus, and cell purification and have in recent years found new uses for small organics, polysaccharides, extracellular vesicles, and biopharmaceuticals. Analytical biochemistry applications such as quantifying protein-protein binding, probing for conformational changes, or monitoring enzyme activity have been performed with ATPSs. Not only are ATPSs biocompatible, they also retain their properties at the microscale, enabling miniaturization experiments such as droplet microfluidics, bacterial quorum sensing, multiplexed and point-of-care immunoassays, and cell patterning. ATPSs include coacervates and may find wider interest in the context of intracellular phase separation and origin of life. Recent advances in fundamental understanding and in commercial application are also considered.
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Affiliation(s)
- Tasdiq Ahmed
- Walter H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory School of Medicine, Atlanta, Georgia 30332, USA;
| | - Cameron Yamanishi
- Walter H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory School of Medicine, Atlanta, Georgia 30332, USA;
| | - Taisuke Kojima
- Walter H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory School of Medicine, Atlanta, Georgia 30332, USA;
| | - Shuichi Takayama
- Walter H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory School of Medicine, Atlanta, Georgia 30332, USA;
- Parker H. Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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6
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Zhang J, Mei L, Ma P, Li Y, Yuan Y, Zeng QZ, Wang Q. Microgel-Stabilized Hydroxypropyl Methylcellulose and Dextran Water-in-Water Emulsion: Influence of pH, Ionic Strength, and Temperature. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:5617-5626. [PMID: 33914554 DOI: 10.1021/acs.langmuir.1c00484] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
A stable water-in-water (W/W) emulsion was formed by mixing dextran and hydroxypropyl methylcellulose (HPMC) with addition of β-lactoglobulin (Blg) microgels. The microstructure and stability of the W/W emulsion were investigated under different conditions. The microgels accumulating at the liquid-liquid interface led to a stable emulsion at pH 3-5, where the microgels carried positive charges. When the pH was increased above the pI of microgels (∼pH 5), the emulsion was destabilized because the microgels tended to stay in the continuous phase (i.e., dextran) rather than at the interface. The HPMC-in-dextran emulsions were stable under ionic strength levels up to 300 mM. The HPMC-in-dextran emulsion stabilized by Blg microgels was thermally stable, and the heat treatment promoted partial Blg microgel particle-particle fusion on the surface of HPMC droplets at 90 °C. Electrostatic and hydrophobic interactions between dextran and HPMC phase were further investigated to understand the microgels' accumulation at the liquid-liquid interface.
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Affiliation(s)
- Jinglin Zhang
- Department of Nutrition & Food Science, University of Maryland, College Park, Maryland 20742, United States
| | - Lei Mei
- Department of Nutrition & Food Science, University of Maryland, College Park, Maryland 20742, United States
| | - Peihua Ma
- Department of Nutrition & Food Science, University of Maryland, College Park, Maryland 20742, United States
| | - Yuan Li
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, P.R. China
| | - Yang Yuan
- School of Chemistry and Chemical Engineering, Guangzhou University, Guangzhou 510006, P.R. China
| | - Qing-Zhu Zeng
- School of Chemistry and Chemical Engineering, Guangzhou University, Guangzhou 510006, P.R. China
| | - Qin Wang
- Department of Nutrition & Food Science, University of Maryland, College Park, Maryland 20742, United States
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Peacock CJ, Lamont C, Sheen DA, Shen VK, Kreplak L, Frampton JP. Predicting the Mixing Behavior of Aqueous Solutions Using a Machine Learning Framework. ACS APPLIED MATERIALS & INTERFACES 2021; 13:11449-11460. [PMID: 33645207 DOI: 10.1021/acsami.0c21036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The most direct approach to determining if two aqueous solutions will phase-separate upon mixing is to exhaustively screen them in a pair-wise fashion. This is a time-consuming process that involves preparation of numerous stock solutions, precise transfer of highly concentrated and often viscous solutions, exhaustive agitation to ensure thorough mixing, and time-sensitive monitoring to observe the presence of emulsion characteristics indicative of phase separation. Here, we examined the pair-wise mixing behavior of 68 water-soluble compounds by observing the formation of microscopic phase boundaries and droplets of 2278 unique 2-component solutions. A series of machine learning classifiers (artificial neural network, random forest, k-nearest neighbors, and support vector classifier) were then trained on physicochemical property data associated with the 68 compounds and used to predict their miscibility upon mixing. Miscibility predictions were then compared to the experimental observations. The random forest classifier was the most successful classifier of those tested, displaying an average receiver operator characteristic area under the curve of 0.74. The random forest classifier was validated by removing either one or two compounds from the input data, training the classifier on the remaining data and then predicting the miscibility of solutions involving the removed compound(s) using the classifier. The accuracy, specificity, and sensitivity of the random forest classifier were 0.74, 0.80, and 0.51, respectively, when one of the two compounds to be examined was not represented in the training data. When asked to predict the miscibility of two compounds, neither of which were represented in the training data, the accuracy, specificity, and sensitivity values for the random forest classifier were 0.70, 0.82 and 0.29, respectively. Thus, there is potential for this machine learning approach to improve the design of screening experiments to accelerate the discovery of aqueous two-phase systems for numerous scientific and industrial applications.
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Affiliation(s)
- Chris J Peacock
- Department of Physics and Atmospheric Science, Dalhousie University, Halifax, Nova Scotia B3H4R2, Canada
| | - Connor Lamont
- Department of Chemistry, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
| | - David A Sheen
- Chemical Informatics Group, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Vincent K Shen
- Chemical Informatics Group, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Laurent Kreplak
- Department of Physics and Atmospheric Science, Dalhousie University, Halifax, Nova Scotia B3H4R2, Canada
- School of Biomedical Engineering, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
| | - John P Frampton
- School of Biomedical Engineering, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
- Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada
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Effect of residence time and energy dissipation on drop size distribution for the dispersion of oil in water using KMS and SMX+ static mixer. Chem Eng Res Des 2019. [DOI: 10.1016/j.cherd.2019.06.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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9
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Teixeira AG, Kleinman A, Agarwal R, Tam NW, Wang J, Frampton JP. Confinement of Suspension-Cultured Cells in Polyethylene Glycol/Polyethylene Oxide-Albumin Aqueous Two-Phase Systems. Front Chem 2019; 7:441. [PMID: 31275925 PMCID: PMC6591268 DOI: 10.3389/fchem.2019.00441] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 05/28/2019] [Indexed: 11/13/2022] Open
Abstract
Aqueous two-phase systems (ATPSs) have numerous applications in separation science, and more recently, in bioassays enabled by the solution micropatterning of cells. The most frequently used ATPS in these applications is the polyethylene glycol (PEG)-dextran (Dex) system, as the polymers that form this ATPS have been extensively characterized in terms of their physicochemical properties. However, in addition to this well-known system, there exist many other ATPSs with properties that may be exploited to improve upon the PEG-dextran system for specific applications. One of these underexplored systems is the ATPS formed from PEG/polyethylene oxide (PEO) and albumin. In this article, we characterize the phase separation of PEG (35 kDa) and polyethylene oxide (PEO) (200, 900, and 4,000 kDa) with bovine serum albumin (BSA). We describe the microscopic emulsion behavior of these systems in the presence of NaCl and compounds (NaHCO3, NaH2PO4, and HEPES) commonly used in buffer solutions and cell culture media. We further demonstrate that PEG- and PEO-albumin systems can be used in place of the PEG-dextran system for confinement of suspension-cultured cells (Jurkat T cells and RPMI-8226 B cells). Cell viability and morphology are examined for various polymer formulations relative to the commonly used PEG 35 kDa-Dex 500 kDa system and polymer-free cell culture medium. In addition, we examine cell activation for various phase-separating medium components by measuring IL-2 and IL-6 secretion. We demonstrate that we can confine immune cells and cytokines in the PEG-BSA system, and that this system can be employed to screen immune responses by enzyme-linked immunospot (ELISpot) assay. This new system represents a promising ATPS formulation for applications where low levels of baseline cell activation are required, for instance, when culturing immune cells.
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Affiliation(s)
- Alyne G. Teixeira
- School of Biomedical Engineering, Dalhousie University, Halifax, NS, Canada
| | | | - Rishima Agarwal
- School of Biomedical Engineering, Dalhousie University, Halifax, NS, Canada
| | - Nicky W. Tam
- School of Biomedical Engineering, Dalhousie University, Halifax, NS, Canada
| | - Jun Wang
- Department of Microbiology and Immunology, Dalhousie University, Halifax, NS, Canada
- Canadian Center for Vaccinology, IWK Health Centre, Halifax, NS, Canada
| | - John P. Frampton
- School of Biomedical Engineering, Dalhousie University, Halifax, NS, Canada
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Kojima T, Lin CC, Takayama S, Fan SK. Determination of Aqueous Two-Phase System Binodals and Tie-Lines by Electrowetting-on-Dielectric Droplet Manipulation. Chembiochem 2019; 20:270-275. [PMID: 30394637 DOI: 10.1002/cbic.201800553] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Indexed: 01/12/2023]
Abstract
Handling the aqueous two-phase systems (ATPSs) formed by liquid-liquid phase separation (LLPS) relies on the accurate construction of binodal curves and tie-lines, which delineate the polymer concentrations required for phase separation and depict the properties of the resulting phases, respectively. Various techniques to determine the binodal curves and tie-lines of ATPSs exist, but most rely on manually pipetting relatively large volumes of fluids in a slow and tedious manner. We describe a method to determine ATPS binodals and tie-lines that overcomes these disadvantages: microscale droplet manipulation by electrowetting-on-dielectric (EWOD). EWOD enables automated handling of droplets in an optically transparent platform that allows for in situ droplet observation. Separated phases are clearly visible, and the volumes of each phase are readily determined. Additionally, in considering the molecular crowding present in living cells, this work examines the role of a macromolecule in prompting LLPS. These results show that EWOD-driven droplet manipulation effectively interrogates the phase dynamics of ATPSs and macromolecular crowding in LLPS.
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Affiliation(s)
- Taisuke Kojima
- The Wallace H. Coulter Department of Biomedical Engineering and, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology and Emory School of Medicine, 950 Atlantic Drive, Atalanta, NW, 30332, USA
| | - Chu-Chi Lin
- Department of Mechanical Engineering, National Taiwan University, No.1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan
| | - Shuichi Takayama
- The Wallace H. Coulter Department of Biomedical Engineering and, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology and Emory School of Medicine, 950 Atlantic Drive, Atalanta, NW, 30332, USA
| | - Shih-Kang Fan
- Department of Mechanical Engineering, National Taiwan University, No.1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan
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Teixeira AG, Agarwal R, Ko KR, Grant‐Burt J, Leung BM, Frampton JP. Emerging Biotechnology Applications of Aqueous Two-Phase Systems. Adv Healthc Mater 2018; 7:e1701036. [PMID: 29280350 DOI: 10.1002/adhm.201701036] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Revised: 10/30/2017] [Indexed: 02/06/2023]
Abstract
Liquid-liquid phase separation between aqueous solutions containing two incompatible polymers, a polymer and a salt, or a polymer and a surfactant, has been exploited for a wide variety of biotechnology applications throughout the years. While many applications for aqueous two-phase systems fall within the realm of separation science, the ability to partition many different materials within these systems, coupled with recent advances in materials science and liquid handling, has allowed bioengineers to imagine new applications. This progress report provides an overview of the history and key properties of aqueous two-phase systems to lend context to how these materials have progressed to modern applications such as cellular micropatterning and bioprinting, high-throughput 3D tissue assembly, microscale biomolecular assay development, facilitation of cell separation and microcapsule production using microfluidic devices, and synthetic biology. Future directions and present limitations and design considerations of this adaptable and promising toolkit for biomolecule and cellular manipulation are further evaluated.
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Affiliation(s)
- Alyne G. Teixeira
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
| | - Rishima Agarwal
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
| | - Kristin Robin Ko
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
| | - Jessica Grant‐Burt
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
| | - Brendan M. Leung
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
- Department of Applied Oral Science Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
| | - John P. Frampton
- School of Biomedical Engineering Dalhousie University 5981 University Avenue Halifax NS B3H 4R2 Canada
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