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Cador A, Hoffmann G, Tognetti V, Joubert L. A theoretical study on aza-Michael additions. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02921-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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2
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Benomrane B, Hamza Reguig F, Krallafa AM. Effectiveness electronic density‐based descriptor to index hard–hard interaction. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Brahim Benomrane
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
| | - Farouk Hamza Reguig
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
| | - Abdelghani Mohamed Krallafa
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
- SirMa CNRS UMR 7369, MEDyC University of Reims Champagne‐Ardenne Reims France
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3
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Miranda-Quintana RA, Heidar-Zadeh F, Fias S, Chapman AEA, Liu S, Morell C, Gómez T, Cárdenas C, Ayers PW. Molecular Interactions From the Density Functional Theory for Chemical Reactivity: The Interaction Energy Between Two-Reagents. Front Chem 2022; 10:906674. [PMID: 35769444 PMCID: PMC9234655 DOI: 10.3389/fchem.2022.906674] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 04/19/2022] [Indexed: 12/13/2022] Open
Abstract
Reactivity descriptors indicate where a reagent is most reactive and how it is most likely to react. However, a reaction will only occur when the reagent encounters a suitable reaction partner. Determining whether a pair of reagents is well-matched requires developing reactivity rules that depend on both reagents. This can be achieved using the expression for the minimum-interaction-energy obtained from the density functional reactivity theory. Different terms in this expression will be dominant in different circumstances; depending on which terms control the reactivity, different reactivity indicators will be preferred.
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Affiliation(s)
- Ramón Alain Miranda-Quintana
- Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, United States
- *Correspondence: Ramón Alain Miranda-Quintana, ; Carlos Cárdenas, ; Paul W. Ayers, ; Tatiana Gómez,
| | | | - Stijn Fias
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, ON, Canada
| | - Allison E. A. Chapman
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, ON, Canada
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC, United States
| | - Christophe Morell
- Université de Lyon, Université Claude Bernard Lyon 1, Institut des Sciences Analytiques-UMR CNRS 5280, Villeurbanne, France
| | - Tatiana Gómez
- Theoretical and Computational Chemistry Center, Institute of Applied Chemical Sciences, Faculty of Engineering, Universidad Autonoma de Chile, Santiago, Chile
- *Correspondence: Ramón Alain Miranda-Quintana, ; Carlos Cárdenas, ; Paul W. Ayers, ; Tatiana Gómez,
| | - Carlos Cárdenas
- Departamento de Fisica, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
- Centro para el desarrollo de la Nanociencias y Nanotecnologia, CEDENNA, Santiago, Chile
- *Correspondence: Ramón Alain Miranda-Quintana, ; Carlos Cárdenas, ; Paul W. Ayers, ; Tatiana Gómez,
| | - Paul W. Ayers
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, ON, Canada
- *Correspondence: Ramón Alain Miranda-Quintana, ; Carlos Cárdenas, ; Paul W. Ayers, ; Tatiana Gómez,
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4
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Franco-Pérez M. The electronic temperature and the effective chemical potential parameters of an atom in a molecule. A Fermi-Dirac semi-local variational approach. Phys Chem Chem Phys 2022; 24:807-816. [PMID: 34908052 DOI: 10.1039/d1cp04071e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We developed a numerical procedure to compute the electronic temperature and the effective (local) chemical potential undergone by electrons belonging to a particular molecular species. Our strategy relies on consider atomic basins as open quantum (sub)systems within the context of the quantum theory of atoms in molecules. Each basin is represented by the two parameters, the electronic temperature and the effective chemical potential, which are determined by distributing electrons (fermions) imbedded in each atomic region, through a Fermi-Dirac semi-local variational procedure. The results obtained for 40 different chemical species show that the effective chemical potential is a useful tool to reveal the most acidic/basic atoms in a molecule while the electronic temperature is closely related to the concept of chemical hardness at the local level. Our numerical data also indicate that the electronic temperature values undergone by electrons imbedded in atomic basins are way beyond the room temperature condition, allowing to fractionally occupy several of the one-particle quantum states. In this context, we developed two new indexes useful to reveal outstanding orbitals involved in the chemical reactivity of atoms in molecules.
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Affiliation(s)
- Marco Franco-Pérez
- Facultad de Química, Universidad Nacional Autónoma de México, Cd. Universitaria, 04510 Ciudad de México, Mexico.
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5
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Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129844] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Miranda‐Quintana RA, Ayers PW, Heidar‐Zadeh F. Reactivity and Charge Transfer Beyond the Parabolic Model: the “|Δμ| Big is Good” Principle. ChemistrySelect 2021. [DOI: 10.1002/slct.202004055] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Paul W. Ayers
- Department of Chemistry & Chemical Biology McMaster University Hamilton Ontario Canada
| | - Farnaz Heidar‐Zadeh
- Department of Chemistry Queen's University 90 Bader Lane Kingston Ontario Canada
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7
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Study of organic reactions using chemical reactivity descriptors derived through a temperature-dependent approach. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2557-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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8
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Geerlings P, Chamorro E, Chattaraj PK, De Proft F, Gázquez JL, Liu S, Morell C, Toro-Labbé A, Vela A, Ayers P. Conceptual density functional theory: status, prospects, issues. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2546-7] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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9
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Sánchez-Márquez J. Correlations between Fukui Indices and Reactivity Descriptors Based on Sanderson’s Principle. J Phys Chem A 2019; 123:8571-8582. [DOI: 10.1021/acs.jpca.9b05571] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jesús Sánchez-Márquez
- Departamento de Química-Física, Facultad de Ciencias, Campus Universitario Río San Pedro, Universidad de Cádiz, 11510 Puerto Real, Cádiz, Spain
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10
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Miranda-Quintana RA, Franco-Pérez M, Gázquez JL, Ayers PW, Vela A. Chemical hardness: Temperature dependent definitions and reactivity principles. J Chem Phys 2018; 149:124110. [DOI: 10.1063/1.5040889] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Marco Franco-Pérez
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, Ave. San Rafael Atlixco 186, Ciudad de México 09340, Mexico
- Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, CP 04510 México D.F., Mexico
| | - José L. Gázquez
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, Ave. San Rafael Atlixco 186, Ciudad de México 09340, Mexico
| | - Paul W. Ayers
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario L8S 4L8, Canada
| | - Alberto Vela
- Departamento de Química, Centro de Investigación y Estudios Avanzados, Av. Instituto Politécnico Nacional 2508, Ciudad de México 07360, Mexico
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11
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Franco-Pérez M, Polanco-Ramírez CA, Gázquez JL, Ayers PW. Local and nonlocal counterparts of global descriptors: the cases of chemical softness and hardness. J Mol Model 2018; 24:285. [DOI: 10.1007/s00894-018-3823-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 09/04/2018] [Indexed: 10/28/2022]
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12
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Abstract
In this work some possibilities for deriving a local electrophilicity are studied. First, we consider the original definition proposed by Chattaraj, Maiti, and Sarkar (J Phys Chem A 107:4973, 2003), in which the local electrophilicity is given by the product of the global electrophilicity, and the Fukui function for charge acceptance is derived by two different approaches, making use of the chain rule for functional derivatives. We also modify the proposals based on the electron density so as to have a definition with the same units of the original definition, which also introduces a dependence in the Fukui function for charge donation. Additionally, we also explore other possibilities using the tools of information theory and the temperature dependent reactivity indices of the density functional theory of chemical reactivity. The poor results obtained from the last two approaches lead us to conjecture that this is due to the fact that the global electrophilicity is not a derivative, like most of the other reactivity indices. The conclusion is that Chattaraj's suggestion seems to be the simplest, but at the same time a very reliable approach to this important property.
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13
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Franco-Pérez M, Gázquez JL, Ayers PW, Vela A. Thermodynamic Justification for the Parabolic Model for Reactivity Indicators with Respect to Electron Number and a Rigorous Definition for the Electrophilicity: The Essential Role Played by the Electronic Entropy. J Chem Theory Comput 2018; 14:597-606. [DOI: 10.1021/acs.jctc.7b00940] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marco Franco-Pérez
- Departamento
de Química, Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Ciudad de México, 09340, México
- Department
of Chemistry, McMaster University, Hamilton, Ontario L8S 4M1, Canada
| | - José L. Gázquez
- Departamento
de Química, Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Ciudad de México, 09340, México
| | - Paul W. Ayers
- Department
of Chemistry, McMaster University, Hamilton, Ontario L8S 4M1, Canada
| | - Alberto Vela
- Departamento
de Química, Centro de Investigación y de Estudios Avanzados, Av. Instituto Politécnico Nacional 2508, Ciudad de México, 07360, México
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14
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Guégan F, Lamine W, Chermette H, Morell C. Comment on “Revisiting the definition of local hardness and hardness kernel” by C. A. Polanco-Ramirez, M. Franco-Pérez, J. Carmona-Espíndola, J. L. Gázquez and P. W. Ayers, Phys. Chem. Chem. Phys., 2017, 19, 12355. Phys Chem Chem Phys 2018. [DOI: 10.1039/c7cp04100d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this comment we show that the derivation proposed Polanco-Ramirez et al. appears naturally in the Taylor expansion of the energy, showing that their whole construction is not artificially built.
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Affiliation(s)
- F. Guégan
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280 CNRS
- Université Claude Bernard Lyon 1
- ENS de Lyon
| | - W. Lamine
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280 CNRS
- Université Claude Bernard Lyon 1
- ENS de Lyon
| | - H. Chermette
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280 CNRS
- Université Claude Bernard Lyon 1
- ENS de Lyon
| | - C. Morell
- Université de Lyon
- Institut des Sciences Analytiques
- UMR 5280 CNRS
- Université Claude Bernard Lyon 1
- ENS de Lyon
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15
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Franco-Pérez M, Polanco-Ramírez CA, Gázquez JL, Ayers PW. Reply to the ‘Comment on “Revisiting the definition of local hardness and hardness kernel”’ by C. Morell, F. Guégan, W. Lamine, and H. Chermette, Phys. Chem. Chem. Phys., 2018, 20, DOI: 10.1039/C7CP04100D. Phys Chem Chem Phys 2018; 20:9011-9014. [DOI: 10.1039/c7cp07974e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Starting from the chain rule for functional derivatives we develop a general procedure to define the local and non-local counterparts of a global reactivity indicator.
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Affiliation(s)
- Marco Franco-Pérez
- Departamento de Química
- Universidad Autónoma Metropolitana-Iztapalapa
- Ciudad de México 09340
- Mexico
| | | | - José L. Gázquez
- Departamento de Química
- Universidad Autónoma Metropolitana-Iztapalapa
- Ciudad de México 09340
- Mexico
| | - Paul W. Ayers
- Department of Chemistry & Chemical Biology
- McMaster University
- Hamilton
- Canada
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16
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Miranda-Quintana RA, Kim TD, Cárdenas C, Ayers PW. The HSAB principle from a finite-temperature grand-canonical perspective. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2167-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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17
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Miranda-Quintana RA, Chattaraj PK, Ayers PW. Finite temperature grand canonical ensemble study of the minimum electrophilicity principle. J Chem Phys 2017; 147:124103. [DOI: 10.1063/1.4996443] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
| | - Pratim K. Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology, Kharagpur 721302, India
| | - Paul W. Ayers
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Ontario L8S 4M1, Canada
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18
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Franco-Pérez M, Polanco-Ramírez CA, Ayers PW, Gázquez JL, Vela A. New Fukui, dual and hyper-dual kernels as bond reactivity descriptors. Phys Chem Chem Phys 2017; 19:16095-16104. [PMID: 28598466 DOI: 10.1039/c7cp02613g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We define three new linear response indices with promising applications for bond reactivity using the mathematical framework of τ-CRT (finite temperature chemical reactivity theory). The τ-Fukui kernel is defined as the ratio between the fluctuations of the average electron density at two different points in the space and the fluctuations in the average electron number and is designed to integrate to the finite-temperature definition of the electronic Fukui function. When this kernel is condensed, it can be interpreted as a site-reactivity descriptor of the boundary region between two atoms. The τ-dual kernel corresponds to the first order response of the Fukui kernel and is designed to integrate to the finite temperature definition of the dual descriptor; it indicates the ambiphilic reactivity of a specific bond and enriches the traditional dual descriptor by allowing one to distinguish between the electron-accepting and electron-donating processes. Finally, the τ-hyper dual kernel is defined as the second-order derivative of the Fukui kernel and is proposed as a measure of the strength of ambiphilic bonding interactions. Although these quantities have never been proposed, our results for the τ-Fukui kernel and for τ-dual kernel can be derived in zero-temperature formulation of the chemical reactivity theory with, among other things, the widely-used parabolic interpolation model.
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Affiliation(s)
- Marco Franco-Pérez
- Department of Chemistry, McMaster University, Hamilton, Ontario, L8S 4M1, Canada.
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19
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Franco-Pérez M, Ayers PW, Gázquez JL, Vela A. Local chemical potential, local hardness, and dual descriptors in temperature dependent chemical reactivity theory. Phys Chem Chem Phys 2017; 19:13687-13695. [DOI: 10.1039/c7cp00692f] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
From the definition of a local chemical potential, well-behaved expressions for the local hardness and the dual descriptors are derived.
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Affiliation(s)
- Marco Franco-Pérez
- Department of Chemistry
- McMaster University
- Hamilton
- Canada
- Departamento de Química
| | - Paul W. Ayers
- Department of Chemistry
- McMaster University
- Hamilton
- Canada
| | - José L. Gázquez
- Departamento de Química
- Universidad Autónoma Metropolitana-Iztapalapa
- Ciudad de México
- Mexico
| | - Alberto Vela
- Departamento de Química
- Centro de Investigación y de Estudios Avanzados
- Ciudad de México
- Mexico
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