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Pandey SN, Pathak NP, Sengupta A, Yadav S. Understanding the gelation properties of the fluorophenyl glycosides of arabinoside gelators: experimental and theoretical studies. SOFT MATTER 2024; 20:7111-7121. [PMID: 39041286 DOI: 10.1039/d4sm00521j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/24/2024]
Abstract
In supramolecular gelation, fluorinated gelators are important due to the unique properties displayed by these compounds that arise out of the presence of fluorine atoms. Generally, incorporation of fluorine leads to higher mechanical strength of the gels compared to their non-fluorinated counterparts and this property is enhanced with increasing the number of fluorine atoms. Herein, we show that the incorporation of fluorine into the phenyl ring of phenyl arabinoside allows the molecule to act as a gelator, unlike the non-fluorinated compound. We also show that the mechanical strength and stiffness of the gels is not only dependent on the positions of the fluorine atoms but also guided by their number. Detailed experimental studies, supported by computational studies, allowed us to rationalize the observed supramolecular interactions and propose reasons based on the conformational preferences of these compounds that allow additional hydrogen bonds and π-π interactions which guide the self-assembly, in addition to the primary H-bonding interactions. This, in turn, affects the mechanical behavior of these gels.
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Affiliation(s)
- Sachchida N Pandey
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India.
| | - Navendu P Pathak
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India.
| | - Arunava Sengupta
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India.
| | - Somnath Yadav
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India.
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2
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A combined experimental and theoretical study on the Synthesis, Spectroscopic Characterization of Magnesium(II) Porphyrin Complex with DMAP axial ligand and antifungal activity. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Narváez-Ordoñez EG, Pabón-Carcelén KA, Zurita-Saltos DA, Bonilla-Valladares PM, Yánez-Darquea TG, Ramos-Guerrero LA, Ulic SE, Jios JL, Echeverría GA, Piro OE, Langer P, Alcívar-León CD, Heredia-Moya J. Synthesis, Experimental and Theoretical Study of Azidochromones. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27092636. [PMID: 35565987 PMCID: PMC9105743 DOI: 10.3390/molecules27092636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 02/10/2022] [Accepted: 02/16/2022] [Indexed: 11/16/2022]
Abstract
A series of 2-(haloalkyl)-3-azidomethyl and 6-azido chromones has been synthetized, characterized and studied by theoretical (DFT calculations) and spectroscopic methods (UV-Vis, NMR). The crystal structure of 3-azidomethyl-2-difluoromethyl chromone, determined by X-ray diffraction methods, shows a planar framework due to extended π-bond delocalization. Its molecular packing is stabilized by F···H, N···H and O···H hydrogen bonds, π···π stacking and C–O···π intermolecular interactions. Moreover, AIM, NCI and Hirshfeld analysis evidenced that azido moiety has a significant role in the stabilization of crystal packing through weak intermolecular interactions, where analysis of electronic density suggested closed-shell (CS) interatomic interactions.
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Affiliation(s)
- Ena G. Narváez-Ordoñez
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
| | - Kevin A. Pabón-Carcelén
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
| | - Daniel A. Zurita-Saltos
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
| | - Pablo M. Bonilla-Valladares
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
| | - Trosky G. Yánez-Darquea
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
| | | | - Sonia E. Ulic
- CEQUINOR (CONICET-UNLP), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, Bv. 120 No 1465, La Plata 1900, Buenos Aires, Argentina;
- Departamento de Ciencias Básicas, Facultad de Ciencias Exactas, Universidad Nacional de Luján, Rutas 5 y 7, Luján 6700, Buenos Aires, Argentina
| | - Jorge L. Jios
- Laboratorio UPL (UNLP-CIC), Camino Centenario e/505 y 508 (1897) M.B. Gonnet and Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, República Argentina. 47 esq. 115, La Plata 1900, Buenos Aires, Argentina;
| | - Gustavo A. Echeverría
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata), La Plata 1900, Buenos Aires, Argentina; (G.A.E.); (O.E.P.)
| | - Oscar E. Piro
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata), La Plata 1900, Buenos Aires, Argentina; (G.A.E.); (O.E.P.)
| | - Peter Langer
- Institut für Chemie, Universität Rostock, Albert-Einstein-Str. 3a, 18059 Rostock, Germany;
- Leibniz Institut für Katalyse, Universität Rostock e. V. (LIKAT), Albert-Einstein-Str. 29a, 18059 Rostock, Germany
| | - Christian D. Alcívar-León
- Facultad de Ciencias Químicas, Universidad Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador; (E.G.N.-O.); (K.A.P.-C.); (D.A.Z.-S.); (P.M.B.-V.); (T.G.Y.-D.)
- Correspondence: (C.D.A.-L.); (J.H.-M.)
| | - Jorge Heredia-Moya
- Centro de Investigación Biomédica (CENBIO), Facultad de Ciencias de la Salud Eugenio Espejo, Universidad UTE, Quito 170527, Ecuador
- Correspondence: (C.D.A.-L.); (J.H.-M.)
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Maalej W, Jaballi R, Rached AB, Guionneau P, Daro N, Elaoud Z. Supramolecular architectures of mononuclear nickel(II) and homobinuclear copper(II) complexes with the 5,5′-dimethyl-2,2′-bipyridine ligand: Syntheses, crystal structures and Hirshfeld surface analyses. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Fradi T, Noureddine O, Taheur FB, Guergueb M, Nasri S, Amiri N, Almahri A, Roisnel T, Guerineau V, Issoui N, Nasri H. New DMAP meso-arylporphyrin Magnesium(II) complex. Spectroscopic, Cyclic voltammetry and X-ray molecular structure characterization. DFT, DOS and MEP calculations and Antioxidant and Antifungal activities. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130299] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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6
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Narváez O EG, Bonilla V. PM, Zurita DA, Alcívar L. CD, Heredia-Moya J, Ulic SE, Jios JL, Piro OE, Echeverría GA, Langer P. Synthesis, experimental and theoretical study of novel 2-haloalkyl (-CF2H, -CCl2H, -CF2CF3)-, 3-bromo and bromomethyl substituted chromones. J Fluor Chem 2021. [DOI: 10.1016/j.jfluchem.2020.109717] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Aycan T. Synthesis, crystal structure, spectroscopic (FT-IR, UV–Vis, EPR) and Hirshfeld surface analysis studies of Zn(II)-benzoate coordination dimer. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.128943] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Shi ZQ, Ji NN, Hu HL. A new Zn II metallocryptand with unprecedented diflexure helix induced by V-shaped diimidazole building blocks. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2020; 76:411-416. [PMID: 32831259 DOI: 10.1107/s2052520620004217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2020] [Accepted: 03/27/2020] [Indexed: 06/11/2023]
Abstract
Taking advantage of V-shaped ligands, a ZnII metallocryptand, namely {[Zn2(didp)2(m-bdc)2]}n, (1) [didp = 2,8-di(1H-imidazol-1-yl)-dibenzothiophene and m-H2bdc = isophthalic acid], has been hydrothermally synthesized. Single-crystal X-ray diffraction analysis reveals a 26-membered butterfly-type metallomacrocycle [Zn2(didp)2]. One m-bdc2- ligand bridges [Zn2(didp)2] units to form a laterally non-symmetric [Zn2(didp)2(m-bdc)] metallocryptand with an exo-exo conformation. Another crystallographically independent m-bdc2- functions as a secondary synthon to bridge discrete metallocryptands into a 1D zigzag chain architecture. Undoubtedly, the choice of two matched ligands in this work is crucial for metallocryptand construction and structure expansion. Interestingly, a rare helical chain with two flexures in one single L and/or R strand is observed. Another important feature is the C-O...π interactions, by which the dimensionality extension of (1) can be induced. Fluorescence measurements and density functional theory (DFT) calculations illustrate that the emission of (1) can probably be attributed to ligand-to-ligand charge transfer (LLCT).
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Affiliation(s)
- Zhi Qiang Shi
- College of Chemistry and Chemical Engineering, Taishan University, Taian, Shandong 271021, People's Republic of China
| | - Ning Ning Ji
- College of Chemistry and Chemical Engineering, Taishan University, Taian, Shandong 271021, People's Republic of China
| | - Hai Liang Hu
- School of Chemical Engineering, Guizhou Minzu University, Guiyang, Guizhou 550025, People's Republic of China
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Espitia Cogollo E, Piro OE, Echeverría GA, Tuttolomondo ME, Pérez H, Jios JL, Ulic SE. Hydrogen bonding interactions in fluorinated 1,2,3-triazole derivatives. NEW J CHEM 2020. [DOI: 10.1039/d0nj02914a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Comprehensive theoretical, structural and spectroscopic investigations on new substituted 1,2,3-triazoles in the solid state.
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Affiliation(s)
- E. Espitia Cogollo
- CEQUINOR (CONICET-UNLP)
- Facultad de Ciencias Exactas
- Universidad Nacional de La Plata
- (1900) La Plata
- Argentina
| | - O. E. Piro
- Departamento de Física
- Facultad de Ciencias Exactas
- Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata)
- (1900) La Plata
- Argentina
| | - G. A. Echeverría
- Departamento de Física
- Facultad de Ciencias Exactas
- Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata)
- (1900) La Plata
- Argentina
| | - M. E. Tuttolomondo
- INQUINOA-CONICET
- Instituto de Química Física
- Facultad de Bioquímica
- Química y Farmacia
- Universidad Nacional de Tucumán
| | - H. Pérez
- Departamento de Química Inorgánica
- Facultad de Química
- Universidad de La Habana
- La Habana 10400
- Cuba
| | - J. L. Jios
- Laboratorio UPL (UNLP-CIC)
- Campus Tecnológico Gonnet (CIC-BA)
- (1897) Gonnet
- Argentina
- Departamento de Química
| | - S. E. Ulic
- CEQUINOR (CONICET-UNLP)
- Facultad de Ciencias Exactas
- Universidad Nacional de La Plata
- (1900) La Plata
- Argentina
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Synthesis and structural study of 2-(haloalkyl)-3-methylchromones. MONATSHEFTE FUR CHEMIE 2019. [DOI: 10.1007/s00706-019-02512-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Alcívar León CD, Echeverría GA, Piro OE, Ulic SE, Jios JL, Luna Tapia CA, Mera Guzmán MF. New thiourea and urea derivatives containing trifluoromethyl- and bis-triflouromethyl-4H-chromen-3-yl substituents. Mol Phys 2019. [DOI: 10.1080/00268976.2018.1514132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- C. D. Alcívar León
- Centro de Investigación de Alimentos, CIAL, Facultad de Ciencias de la Ingeniería e Industrias, Universidad Tecnológica Equinoccial, Quito, Ecuador
| | - G. A. Echeverría
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata), La Plata, Argentina
| | - O. E. Piro
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata e IFLP (CONICET, CCT-La Plata), La Plata, Argentina
| | - S. E. Ulic
- CEQUINOR (CONICET-UNLP), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, República Argentina
- Departamento de Ciencias Básicas, Universidad Nacional de Luján, Buenos Aires, República Argentina
| | - J. L. Jios
- UNIDAD PLAPIMU-LASEISIC (UNLP-CIC), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina
| | - C. A. Luna Tapia
- Centro de Investigación de Alimentos, CIAL, Facultad de Ciencias de la Ingeniería e Industrias, Universidad Tecnológica Equinoccial, Quito, Ecuador
| | - M. F. Mera Guzmán
- Centro de Investigación de Alimentos, CIAL, Facultad de Ciencias de la Ingeniería e Industrias, Universidad Tecnológica Equinoccial, Quito, Ecuador
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Saeed A, Arif M, Erben MF, Flörke U, Simpson J. One-pot synthesis, quantum chemical calculations and X-ray diffraction studies of thiazolyl-coumarin hybrid compounds. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 198:290-296. [PMID: 29558728 DOI: 10.1016/j.saa.2018.03.036] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 02/09/2018] [Accepted: 03/12/2018] [Indexed: 06/08/2023]
Abstract
Two closely related hybrid species containing both, thiazolyl and coumarin groups, were synthesized by using two different one-pot procedures from a common precursor. The reaction of α-bromoacetylcoumarin with thioacetamide in methanol furnished 3‑(2‑methylthiazol‑4‑yl)‑2H‑chromen‑2‑one (2), whereas refluxing α‑bromoacetylcoumarin with potassium thiocyanate in ethanol afforded 3‑(2‑ethoxythiazol‑4‑yl)‑2H‑chromen‑2‑one (3). Both derivatives were fully characterized by spectroscopic methods, elemental analysis and X-ray diffraction studies. Intramolecular C4H⋯N and C5'H⋯OC hydrogen bonds between the heterocycles determine the conformational behavior. The co-planarity of the coumarin and thiazolyl rings favors the occurrence of two remote orbital interactions involving the oxygen and nitrogen lone pairs and the corresponding σ*CH electron acceptor, as demonstrated by Natural Bond Orbital population analysis. The 2-substitution of the thiazol‑4‑yl group has little effect on the molecular structures but causes significant differences in the crystal packing of the two compounds.
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Affiliation(s)
- Aamer Saeed
- Department of Chemistry, Quaid-I-Azam University, Islamabad 45320, Pakistan.
| | - Mubeen Arif
- Department of Chemistry, Quaid-I-Azam University, Islamabad 45320, Pakistan
| | - Mauricio F Erben
- CEQUINOR (UNLP, CONICET-CCT La Plata), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, Bv. 120 1465, 1900 La Plata, Argentina.
| | - Ulrich Flörke
- Department of Chemistry, University of Paderborn, 33098 Paderborn, Germany
| | - Jim Simpson
- Department of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
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