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ERDEM A, ŞENTÜRK H, YILDIZ E, MARAL M, YILDIRIM A, BOZOĞLU A, KIVRAK B, AY NC. Electrochemical DNA biosensors developed for the monitoring of biointeractions with drugs: a review. Turk J Chem 2023; 47:864-887. [PMID: 38173734 PMCID: PMC10760829 DOI: 10.55730/1300-0527.3584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 10/31/2023] [Accepted: 09/30/2023] [Indexed: 01/05/2024] Open
Abstract
The interaction of drugs with DNA is important for the discovery of novel drug molecules and for understanding the therapeutic effects of drugs as well as the monitoring of side effects. For this reason, many studies have been carried out to investigate the interactions of drugs with nucleic acids. In recent years, a large number of studies have been performed to electrochemically detect drug-DNA interactions. The fast, sensitive, and accurate results of electrochemical techniques have resulted in a leading role for their implementation in this field. By means of electrochemical techniques, it is possible not only to demonstrate drug-DNA interactions but also to quantitatively analyze drugs. In this context, electrochemical biosensors for drug-DNA interactions have been examined under different headings including anticancer, antiviral, antibiotic, and central nervous system drugs as well as DNA-targeted drugs. An overview of the studies related to electrochemical DNA biosensors developed for the detection of drug-DNA interactions that were reported in the last two decades in the literature is presented herein along with their applications and they are discussed together with their future perspectives.
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Affiliation(s)
- Arzum ERDEM
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Huseyin ŞENTÜRK
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Esma YILDIZ
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Meltem MARAL
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Ayla YILDIRIM
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Aysen BOZOĞLU
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Burak KIVRAK
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
| | - Neslihan Ceren AY
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, İzmir,
Turkiye
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2
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Cheraghi S, Şenel P, Dogan Topal B, Agar S, Majidian M, Yurtsever M, Bellur Atici E, Gölcü A, Ozkan SA. Elucidation of DNA-Eltrombopag Binding: Electrochemical, Spectroscopic and Molecular Docking Techniques. BIOSENSORS 2023; 13:300. [PMID: 36979512 PMCID: PMC10046231 DOI: 10.3390/bios13030300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/13/2023] [Accepted: 02/16/2023] [Indexed: 06/18/2023]
Abstract
Eltrombopag is a powerful adjuvant anticancer drug used in treating MS (myelodysplastic syndrome) and AML (acute myeloid leukemia) diseases. In this study, the interaction mechanism between eltrombopag and DNA was studied by voltammetry, spectroscopic techniques, and viscosity measurements. We developed a DNA-based biosensor and nano-biosensor using reduced graphene oxide-modified glassy carbon electrode to detect DNA-eltrombopag binding. The reduction of desoxyguanosine (dGuo) and desoxyadenosine (dAdo) oxidation signals in the presence of the drug demonstrated that a strong interaction could be established between the eltrombopag and dsDNA. The eltrombopag-DNA interaction was further investigated by UV absorption and fluorescence emission spectroscopy to gain more quantitative insight on binding. Viscosity measurements were utilized to characterize the binding mode of the drug. To shed light on the noncovalent interactions and binding mechanism of eltrombopag molecular docking and molecular dynamics (MD), simulations were performed. Through simultaneously carried out experimental and in silico studies, it was established that the eltrombopag binds onto the DNA via intercalation.
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Affiliation(s)
- Somaye Cheraghi
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara 06560, Turkey
- Department of Chemistry, Shahid Bahonar University of Kerman, Kerman 7616914111, Iran
| | - Pelin Şenel
- Department of Chemistry, Faculty of Science and Letters, Istanbul Technical University, Istanbul 34469, Turkey
| | - Burcu Dogan Topal
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara 06560, Turkey
| | - Soykan Agar
- Department of Chemistry, Faculty of Science and Letters, Istanbul Technical University, Istanbul 34469, Turkey
| | - Mahsa Majidian
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara 06560, Turkey
| | - Mine Yurtsever
- Department of Chemistry, Faculty of Science and Letters, Istanbul Technical University, Istanbul 34469, Turkey
| | | | - Ayşegül Gölcü
- Department of Chemistry, Faculty of Science and Letters, Istanbul Technical University, Istanbul 34469, Turkey
| | - Sibel A. Ozkan
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara 06560, Turkey
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3
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Evtugyn GA, Porfireva AV, Belyakova SV. Electrochemical DNA sensors for drug determination. J Pharm Biomed Anal 2022; 221:115058. [PMID: 36179503 DOI: 10.1016/j.jpba.2022.115058] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 09/13/2022] [Accepted: 09/14/2022] [Indexed: 11/16/2022]
Abstract
In this review, recent achievements in the development of the DNA biosensors developed for the drug determination have been presented with particular emphasis to the main principles of their assembling and signal measurement approaches. The design of the DNA sensors is considered with characterization of auxiliary components and their necessity for the biosensor operation. Carbon nanomaterials, metals and their complexes as well as electropolymerized polymers are briefly described in the assembly of DNA sensors. The performance of the DNA sensors is summarized within 2017-2022 for various drugs and factors influencing the sensitivity and selectivity of the response are discussed. Special attention is paid to the mechanism of the signal generation and possible drawbacks in the analysis of real samples.
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Affiliation(s)
- G A Evtugyn
- A.M. Butlerov' Chemistry Institute of Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russian Federation; Analytical Chemistry Department of Chemical Technology Institute of Ural Federal University, 19 Mira Street, Ekaterinburg 620002, Russian Federation.
| | - A V Porfireva
- A.M. Butlerov' Chemistry Institute of Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russian Federation
| | - S V Belyakova
- A.M. Butlerov' Chemistry Institute of Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russian Federation
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4
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Azriouil M, Matrouf M, Ettadili FE, Laghrib F, Farahi A, Saqrane S, Bakasse M, Lahrich S, El Mhammedi MA. Recent trends on electrochemical determination of antibiotic Ciprofloxacin in biological fluids, pharmaceutical formulations, environmental resources and foodstuffs: Direct and indirect approaches. Food Chem Toxicol 2022; 168:113378. [PMID: 35987282 DOI: 10.1016/j.fct.2022.113378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 07/30/2022] [Accepted: 08/11/2022] [Indexed: 11/28/2022]
Abstract
In the last few decades, pharmaceuticals, credited with saving millions of lives, have emerged as a new class of environmental contaminants. These compounds can have both chronic and acute harmful effects on aquatic ecosystems and consequently on human health. Therefore, there is an urgent need for the development of extremely sensitive, portable, and low-cost devices to perform analysis. In the present review article, recent reports on the application of various voltammetric and photo-electrochemical techniques using different electrode materials for the determination of antibiotic Ciprofloxacin (CIPRO) are reported. This review provides an insight into direct and indirect electrochemical approaches as well as the photoelectrochemical methods used for the determination of CIPRO. Emphasis is put on the applications of unmodified and modified carbon-based electrodes considering the modifier, supporting electrolytes, analytical method, concentration range, limit of detection, and real matrices. Carbon-based electrodes are the most used materials attributed to their commercial availability, reduced cost, high chemical stability, and non-toxicity.
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Affiliation(s)
- M Azriouil
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - M Matrouf
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - F E Ettadili
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - F Laghrib
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco; Sidi Mohamed Ben Abdellah University, Engineering Laboratory of Organometallic, Molecular Materials, and Environment, Faculty of Sciences, Fez, Morocco
| | - A Farahi
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - S Saqrane
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - M Bakasse
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco; Chouaib Doukkali University, Organic Micropollutants Analysis Team, Faculty of Sciences, Morocco
| | - S Lahrich
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco
| | - M A El Mhammedi
- Sultan Moulay Slimane University of Beni Mellal, Laboratory of Materials Science, Mathematics and Environment, Polydisciplinary Faculty, 25 000, Khouribga, Morocco.
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Jiwanti PK, Wardhana BY, Sutanto LG, Chanif MF. A Review on Carbon‐based Electrodes for Electrochemical Sensor of Quinolone Antibiotics. ChemistrySelect 2022. [DOI: 10.1002/slct.202103997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Prastika K. Jiwanti
- Nanotechnology Engineering Faculty of Advanced Technology and Multidiscipline Universitas Airlangga Surabaya 60115 Indonesia
| | - Brasstira Y. Wardhana
- Nanotechnology Engineering Faculty of Advanced Technology and Multidiscipline Universitas Airlangga Surabaya 60115 Indonesia
| | - Laurencia G. Sutanto
- Nanotechnology Engineering Faculty of Advanced Technology and Multidiscipline Universitas Airlangga Surabaya 60115 Indonesia
| | - Muchammad F. Chanif
- Nanotechnology Engineering Faculty of Advanced Technology and Multidiscipline Universitas Airlangga Surabaya 60115 Indonesia
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6
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The first diagnostic test for specific detection of Mycobacterium simiae using an electrochemical label-free DNA nanobiosensor. Talanta 2022; 238:123049. [PMID: 34801906 DOI: 10.1016/j.talanta.2021.123049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 10/06/2021] [Accepted: 11/06/2021] [Indexed: 01/08/2023]
Abstract
Mycobacterium simiae has been reported to be the most prevalent species of Nontuberculous mycobacteria (NTM) in many countries. As both phenotypic and molecular detection of M. simiae and other NTMs have limitations, finding an accurate, fast, and low-cost diagnostic method is critical for the management of infections. Here, we report the development of a new type of label-free electrochemical biosensor using a gold electrode decorated with l-cysteine/PAMAM dendrimer for specific targeting of M. simiae ITS sequence. DNA hybridization was monitored by measuring changes in the free guanine electrical signal with changing ssDNA target concentrations by differential pulse voltammetry (DPV) method. Response surface methodology (RSM) was applied for the optimization of variables affecting biosensor response. Under optimal conditions, the biosensor revealed a wide linear range from 10-14 M to 10-6 M and a detection limit of 1.40 fM. The fabricated biosensor showed an excellent selectivity to M. simiae in the presence of other similar pathogenic bacteria. Moreover, experimental results confirmed that this biosensor exhibited great precision and high reproducibility, hence provides a low-cost, label-free, and faster detection analysis, representing a novel strategy in detecting other NTMs.
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7
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Alizadeh M, Azar PA, Mozaffari SA, Karimi-Maleh H, Tamaddon AM. A DNA Based Biosensor Amplified With ZIF-8/Ionic Liquid Composite for Determination of Mitoxantrone Anticancer Drug: An Experimental/Docking Investigation. Front Chem 2020; 8:814. [PMID: 33195033 PMCID: PMC7606923 DOI: 10.3389/fchem.2020.00814] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Accepted: 08/03/2020] [Indexed: 12/16/2022] Open
Abstract
An ultrasensitive DNA electrochemical biosensor based on the carbon paste electrode (CPE) amplified with ZIF-8 and 1-butyl-3-methylimidazolium methanesulfonate (BMIMS) was fabricated in this research. The DNA/BMIMS/ZIF-8/CPE was used for the selective determination of a mitoxantrone anticancer drug in aqueous solution, resulting in a good catalytic effect and a powerful ability for determining mitoxantrone. Also, the interaction of the mitoxantrone anticancer drug with guanine bases of ds-DNA was used as a powerful strategy in the suggested biosensor, which was confirmed with docking investigation. Docking study of mitoxantrone into the ds-DNA sequence showed the intercalative binding mode of mitoxantrone into the nitrogenous-based pairs of ds-DNA. The effective factors such as ds-DNA concentration, temperature, buffer types, and incubation time were also optimized for the fabricated mitoxantrone biosensor. The results showed that, under optimum conditions (T = 25°C; incubation time=12 min; pH= 4.8 acetate buffer solution and [DNA] = 50 mg/L), the DNA/BMIMS/ZIF-8/CPE could be used in mitoxantrone assay in a concentration ranging from 8.0 nM to 110 μM with a detection limit of 3.0 nM. In addition, recovery data between 99.18 and 102.08% were obtained for the determination of mitoxantrone in the injection samples using DNA/ZIF-8/BMIMF/CPE as powerful biosensors.
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Affiliation(s)
- Marzieh Alizadeh
- Department of Chemistry, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Parviz Aberoomand Azar
- Department of Chemistry, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Sayed Ahmad Mozaffari
- Department of Chemical Technologies, Iranian Research Organization for Science and Technology (IROST), Tehran, Iran
| | - Hassan Karimi-Maleh
- Laboratory of Nanotechnology, Department of Chemical Engineering, Quchan University of Technology, Quchan, Iran
| | - Ali-Mohammad Tamaddon
- Center for Nanotechnology in Drug Delivery, School of Pharmacy, Shiraz University of Medical Sciences, Shiraz, Iran
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8
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Ghalkhani M, Kaya SI, Bakirhan NK, Ozkan Y, Ozkan SA. Application of Nanomaterials in Development of Electrochemical Sensors and Drug Delivery Systems for Anticancer Drugs and Cancer Biomarkers. Crit Rev Anal Chem 2020; 52:481-503. [DOI: 10.1080/10408347.2020.1808442] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Masoumeh Ghalkhani
- Department of Chemistry, Faculty of Science, Shahid Rajaee Teacher Training University, Tehran, Iran
| | - Sariye Irem Kaya
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara, Turkey
- Gulhane Faculty of Pharmacy, Department of Analytical Chemistry, University of Health Sciences, Ankara, Turkey
| | - Nurgul K. Bakirhan
- Gulhane Faculty of Pharmacy, Department of Analytical Chemistry, University of Health Sciences, Ankara, Turkey
| | - Yalcin Ozkan
- Gulhane Faculty of Pharmacy, Department of Pharmaceutical Technology, University of Health Sciences, Ankara, Turkey
| | - Sibel A. Ozkan
- Department of Analytical Chemistry, Faculty of Pharmacy, Ankara University, Ankara, Turkey
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9
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Celik S, Albayrak AT, Akyuz S, Ozel AE, Sigirci BD. Synthesis, antimicrobial activity, molecular docking and ADMET study of a caprolactam-glycine cluster. J Biomol Struct Dyn 2020; 39:2376-2386. [PMID: 32216608 DOI: 10.1080/07391102.2020.1748112] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Density functional theory calculations were performed with DFT method using both b3lyp/6-311++G(d,p) and wb97xd/6-311++G(d,p) levels of theory to predict the molecular geometry, to evaluate the molecular electrostatic potential and frontier molecular orbitals of synthesized a new compound: caprolactam-glysine cluster (CL-Gly). Molecular docking study of the CL-Gly was carried out to clarify the interaction and the probable binding modes, between the title compound and DNA. The antibacterial activities of CL-Gly cluster against Gram-positive and Gram-negative bacteria was determined. In silico ADMET study was also performed for predicting pharmacokinetic and toxicity profile of the synthesized cluster which expressed good drug-like behavior and non-toxic nature. It was revealed that the compound has importance in drug discovery process.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sefa Celik
- Physics Department, Science Faculty, Istanbul University, Vezneciler, Istanbul, Turkey
| | - Ali Tugrul Albayrak
- Chemical Engineering Department, Engineering Faculty, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Sevim Akyuz
- Physics Department, Science and Letters Faculty, Istanbul Kultur University, Istanbul, Turkey
| | - Aysen E Ozel
- Physics Department, Science Faculty, Istanbul University, Vezneciler, Istanbul, Turkey
| | - Belgi Diren Sigirci
- Department of Microbiology, Faculty of Veterinary Medicine, Istanbul University-Cerrahpasa, Istanbul, Turkey
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10
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Khoder R, Korri-Youssoufi H. E-DNA biosensors of M. tuberculosis based on nanostructured polypyrrole. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2020; 108:110371. [DOI: 10.1016/j.msec.2019.110371] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 10/15/2019] [Accepted: 10/27/2019] [Indexed: 01/20/2023]
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Polypyrrole-Wrapped Carbon Nanotube Composite Films Coated on Diazonium-Modified Flexible ITO Sheets for the Electroanalysis of Heavy Metal Ions. SENSORS 2020; 20:s20030580. [PMID: 31973054 PMCID: PMC7037355 DOI: 10.3390/s20030580] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 01/18/2020] [Indexed: 12/25/2022]
Abstract
Highly sensitive multicomponent materials designed for the recognition of hazardous compounds request control over interfacial chemistry. The latter is a key parameter in the construction of the sensing (macro) molecular architectures. In this work, multi-walled carbon nanotubes (CNTs) were deposited on diazonium-modified, flexible indium tin oxide (ITO) electrodes prior to the electropolymerization of pyrrole. This three-step process, including diazonium electroreduction, the deposition of CNTs and electropolymerization, provided adhesively-bonded, polypyrrole-wrapped CNT composite coatings on aminophenyl-modified flexible ITO sheets. The aminophenyl (AP) groups were attached to ITO by electroreduction of the in-situ generated aminobenzenediazonium compound in aqueous, acidic medium. For the first time, polypyrrole (PPy) was electrodeposited in the presence of both benzenesulfonic acid (dopant) and ethylene glycol-bis(2-aminoethylether)-tetraacetic acid (EGTA), which acts as a chelator. The flexible electrodes were characterized by XPS, Raman and scanning electron microscopy (SEM), which provided strong supporting evidence for the wrapping of CNTs by the electrodeposited PPy. Indeed, the CNT average diameter increased from 18 ± 2.6 nm to 27 ± 4.8, 35.6 ± 5.9 and 175 ± 20.1 after 1, 5 and 10 of electropolymerization of pyrrole, respectively. The PPy/CNT/NH2-ITO films generated by this strategy exhibit significantly improved stability and higher conductivity compared to a similar PPy coating without any embedded CNTs, as assessed by from electrochemical impedance spectroscopy measurements. The potentiometric response was linear in the 10−8–3 × 10−7 mol L−1 Pb(II) concentration range, and the detection limit was 2.9 × 10−9 mol L−1 at S/N = 3. The EGTA was found to drastically improve selectivity for Pb(II) over Cu(II). To account for this improvement, the density functional theory (DFT) was employed to calculate the EGTA–metal ion interaction energy, which was found to be −374.6 and −116.4 kJ/mol for Pb(II) and Cu(II), respectively, considering solvation effects. This work demonstrates the power of a subtle combination of diazonium coupling agent, CNTs, chelators and conductive polymers to design high-performance electrochemical sensors for environmental applications.
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12
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Karimi-Maleh H, Karimi F, Alizadeh M, Sanati AL. Electrochemical Sensors, a Bright Future in the Fabrication of Portable Kits in Analytical Systems. CHEM REC 2019; 20:682-692. [PMID: 31845511 DOI: 10.1002/tcr.201900092] [Citation(s) in RCA: 214] [Impact Index Per Article: 42.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 11/28/2019] [Accepted: 12/04/2019] [Indexed: 12/16/2022]
Abstract
Analysis of food, pharmaceutical, and environmental compounds is an inevitable issue to evaluate quality of the compounds used in human life. Quality of drinking water, food products, and pharmaceutical compounds is directly associated with human health. Presence of forbidden additives in food products, toxic compounds in water samples and drugs with low quality lead to important problems for human health. Therefore, attention to analytical strategy for investigation of quality of food, pharmaceutical, and environmental compounds and monitoring presence of forbidden compounds in materials used by humans has increased in recent years. Analytical methods help to identify and quantify both permissible and unauthorized compounds present in the materials used in human daily life. Among analytical methods, electrochemical methods have been shown to have more advantages compared to other analytical methods due to their portability and low cost. Most of big companies have applied this type of analytical methods because of their fast and selective analysis. Due to simple operation and high diversity of electroanalytical sensors, these types of sensors are expected to be the future generation of analytical systems. Therefore, many scientists and researchers have focused on designing and fabrication of electroanalytical sensors with good selectivity and high sensitivity for different types of compounds such as drugs, food, and environmental pollutants. In this paper, we described the mechanism and different examples of DNA, enzymatic and electro-catalytic methods for electroanalytical determination of drug, food and environmental compounds.
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Affiliation(s)
- Hassan Karimi-Maleh
- School of Resources and Enviroment, University of Electronic Science and Technology of China, P.O. Box 611731, Xiyuan Ave, Chengdu, P.R. China.,Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran.,Department of Chemical Sciences, University of Johannesburg, P.O. Box 17011, Doornfontein Campus, 2028, Johannesburg, South Africa
| | - Fatemeh Karimi
- School of Resources and Enviroment, University of Electronic Science and Technology of China, P.O. Box 611731, Xiyuan Ave, Chengdu, P.R. China.,Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
| | - Marzieh Alizadeh
- Center for Nanotechnology in Drug Delivery, School of Pharmacy, Shiraz University of Medical Sciences, Shiraz, PO Box 71345-1583, Iran
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DNA-Polylactide Modified Biosensor for Electrochemical Determination of the DNA-Drugs and Aptamer-Aflatoxin M1 Interactions. SENSORS 2019; 19:s19224962. [PMID: 31739501 PMCID: PMC6891816 DOI: 10.3390/s19224962] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 11/07/2019] [Accepted: 11/11/2019] [Indexed: 12/13/2022]
Abstract
DNA sensors were assembled by consecutive deposition of thiacalix[4]arenes bearing oligolactic fragments, poly(ethylene imine), and DNA onto the glassy carbon electrode. The assembling of the layers was monitored with scanning electron microscopy, cyclic voltammetry and electrochemical impedance spectroscopy. The configuration of the thiacalix[4]arene core determined self-assembling of the polymeric species to the nano/micro particles with a size of 70–350 nm. Depending on the granulation, the coatings show the accumulation of a variety of DNA quantities, charges, and internal pore volumes. These parameters were used to optimize the DNA sensors based on these coatings. Thus, doxorubicin was determined to have limits of detection of 0.01 nM (cone configuration), 0.05 nM (partial cone configuration), and 0.10 nM (1,3-alternate configuration of the macrocycle core). Substitution of native DNA with aptamer specific to aflatoxin M1 resulted in the detection of the toxin in the range of 20 to 200 ng/L (limit of detection 5 ng/L). The aptasensor was tested in spiked milk samples and showed a recovery of 80 and 85% for 20 and 50 ng/L of the aflatoxin M1, respectively.
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De la Cruz Morales K, Alarcón‐Angeles G, Merkoçi A. Nanomaterial‐based Sensors for the Study of DNA Interaction with Drugs. ELECTROANAL 2019. [DOI: 10.1002/elan.201900286] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- K. De la Cruz Morales
- Universidad Autónoma Metropolitana-XochimilcoDepartamento de Sistemas Biológicos C.P. 04960 México City
| | - G. Alarcón‐Angeles
- Universidad Autónoma Metropolitana-XochimilcoDepartamento de Sistemas Biológicos C.P. 04960 México City
| | - A. Merkoçi
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST Campus UAB, Bellaterra 08193 Barcelona Spain
- ICREA – Catalan Institution for Research and Advanced Studies Barcelona 08010 Spain
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15
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Karimi-Maleh H, Karimi F, Rezapour M, Bijad M, Farsi M, Beheshti A, Shahidi SA. Carbon Paste Modified Electrode as Powerful Sensor Approach Determination of Food Contaminants, Drug Ingredients, and Environmental Pollutants: A Review. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666181026100037] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Application of electrochemical sensors for analysis of food, biological and
water polluting compounds helps to speed up their analysis in the real samples. Electrochemical sensors
with low cost, fast response and portable ability are a better choice compared to traditional
methods for analysis of electro-active compounds such as HPLC. Therefore, in recent years, many
analytical scientists have suggested this type of analytical method for analysis of food, biological
compounds and water pollutants.
Objective:
Due to low cost, easy modification and low non-faradic current, the carbon paste electrode
is a suitable choice as a working electrode in the electrochemical and especially voltammetric analysis.
On the other hand, modification of carbon paste electrode can improve the quality of the sensor
for the analysis of electroactive compounds at nanomolar level.
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Affiliation(s)
- Hassan Karimi-Maleh
- Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
| | - Fatemeh Karimi
- Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
| | - Morteza Rezapour
- IP Department, Research Institute of Petroleum Industry (RIPI), P.O. Box 14665-137, Tehran, Iran
| | - Majede Bijad
- Department of Food Science, Sari Branch, Islamic Azad University, Sari, Iran
| | - Mohammad Farsi
- Department of Food Science, Sari Branch, Islamic Azad University, Sari, Iran
| | - Aliasghar Beheshti
- Department of Water Resources Engineering, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Seyed-Ahmad Shahidi
- Department of Food Science and Technology, Ayatollah Amoli Branch, Islamic Azad University, Amol, Iran
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16
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A voltammetric carbon paste sensor modified with NiO nanoparticle and ionic liquid for fast analysis of p-nitrophenol in water samples. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.04.084] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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17
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Jahandari S, Taher MA, Karimi-Maleh H, Khodadadi A, Faghih-Mirzaei E. A powerful DNA-based voltammetric biosensor modified with Au nanoparticles, for the determination of Temodal; an electrochemical and docking investigation. J Electroanal Chem (Lausanne) 2019. [DOI: 10.1016/j.jelechem.2019.03.049] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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18
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Celik S, Albayrak AT, Akyuz S, Ozel AE. Synthesis, molecular docking and ADMET study of ionic liquid as anticancer inhibitors of DNA and COX-2, TOPII enzymes. J Biomol Struct Dyn 2019; 38:1354-1364. [PMID: 30955453 DOI: 10.1080/07391102.2019.1604263] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A new ionic liquid was synthesized by the reaction of caprolactam with salicylic acid (CL-SA) and characterized by analysis of spectroscopic and DSC data. The optimized geometry and the electrostatic potential map of CL-SA were calculated with DFT method using the wb97xd/6-31++G(d,p) level of theory. Molecular docking study of the CL-SA was carried out to clarify the probable binding modes between the title compound and DNA and COX-2 and TOPII enzymes. In silico ADMET study was also performed for predicting pharmacokinetic and toxicity profile of the synthesized ionic liquid which expressed good oral drug-like behavior and non-toxic nature. It was revealed that the compound has a potential to become a lead molecule in drug discovery process.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sefa Celik
- Electrical and Electronics Engineering Department, Engineering Faculty, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Ali Tugrul Albayrak
- Chemical Engineering Department, Engineering Faculty, Istanbul University-Cerrahpasa, Istanbul, Turkey
| | - Sevim Akyuz
- Physics Department, Science and Letters Faculty, Istanbul Kultur University, Bakirkoy, Istanbul, Turkey
| | - Aysen E Ozel
- Physics Department, Science Faculty, Istanbul University, Istanbul, Turkey
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19
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Shamsadin-Azad Z, Taher MA, Cheraghi S, Karimi-Maleh H. A nanostructure voltammetric platform amplified with ionic liquid for determination of tert-butylhydroxyanisole in the presence kojic acid. JOURNAL OF FOOD MEASUREMENT AND CHARACTERIZATION 2019. [DOI: 10.1007/s11694-019-00096-6] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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20
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Miraki M, Karimi-Maleh H, Taher MA, Cheraghi S, Karimi F, Agarwal S, Gupta VK. Voltammetric amplified platform based on ionic liquid/NiO nanocomposite for determination of benserazide and levodopa. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.01.081] [Citation(s) in RCA: 132] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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21
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Yola ML. Development of Novel Nanocomposites Based on Graphene/Graphene Oxide and Electrochemical Sensor Applications. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180320111246] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Until now, several methods such as spectroscopic methods and chromatographic
techniques have been developed for the determination of biomolecules, drug or heavy metals.
Nevertheless, the crucial interference problems are present in these methods. Due to these reasons,
more sensitive, favorable portability, low-cost, simple and selective sensors based on nanocomposites
are needed in terms of health safety. In the development of electrochemical nanosensor, the nanomaterials
such as graphene/graphene oxide, carbon and carbon nitride nanotubes are utilized to improve
the sensitivity.
Objective:
The nanomaterials such as graphene/graphene oxide, carbon and carbon nitride nanotubes
have important advantages such as high surface area, electrical conductivity, thermal and mechanical
stability. Hence, we presented the highly selective methods for sensitive sensor applications by molecular
imprinting technology in literature. This technology is a polymerization method around target
molecule. This method provides the specific cavities to analyte molecule on the polymer surface.
Hence, the selective sensor is easily created for biomedical and other applications. Novel electrochemical
sensors based on nanocomposite whose surface is coated with Molecular Imprinting Polymer
(MIP) are developed and then applied to the selective and sensitive detection in this study. Until now,
we have presented several reports about nanocomposite based sensor with MIP.
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Affiliation(s)
- Mehmet Lütfi Yola
- Department of Biomedical Engineering, Faculty of Engineering and Natural Sciences, Iskenderun Technical University, Hatay, Turkey
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22
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Samadzadeh A, Sheikhshoaie I, Karimi-Maleh H. Simultaneous Determination of Epinephrine and Tyrosine Using a Glassy Carbon Electrode Amplified with ZnO-Pt/CNTs Nanocomposite. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180313115001] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Simultaneous analysis of epinephrine and tyrosine as two effective and important
biological compounds in human blood and urine samples are very important for the investigation
of human health.
Objective:
In this research, a highly effective voltammetric sensor fabricated for simultaneous analysis
of epinephrine and tyrosine. The sensor was fabricated by the modification of glassy carbon electrode
with ZnO-Pt/CNTs nanocomposite (ZnO-Pt/CNTs/GCE). The synthesized nanocomposite was characterized
by SEM method. The ZnO-Pt/CNTs/GCE showed two separated oxidation signals at potential
~220 mV and 700 mV for epinephrine and tyrosine, respectively. Also, we detected linear dynamic
ranges 0.5-250.0 µM and 1.0-220 µM with a limit of detections 0.1 µM and 0.5 µM for the determination
of epinephrine and tyrosine, respectively. The ZnO-Pt/CNTs/GCE was used for the determination
of epinephrine and tyrosine in blood serum and human urine samples.
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Affiliation(s)
- Ali Samadzadeh
- Department of Chemistry, Shahid Bahonar University, Kerman, Iran
| | | | - Hassan Karimi-Maleh
- Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
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23
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Beigizadeh H, Ganjali MR, Norouzi P. Voltammetric Sensors Based on Various Nanomaterials for the Determination of Sulfonamides. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180313114313] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
The widespread applications of sulphonamides, as antibacterial or antimicrobial
agents, and their mechanism of actions in the body, have changed their determination to an important
issue in the area of human health.
Objective:
Here, history of developing voltammetric sensors based on nanomaterials for the detection of
sulfonamides including sulfadiazine, sulfamethoxazole, sulfacetamide, sulfadimethoxine, sulfathiazole,
sulfamethiazole and sulfamerazine is reviewed. Modified electrodes based on various nanomaterials
(carbonaceous nanomaterials, Metallic Nanoparticles (MNPs), conducting nanopolymers) have been
reported, and studies showed that nanomaterials have been mostly used to overcome problems like the
poor sensitivity and selectivity of bare electrodes. The study covers the properties of each sensor in
detail, and reports and compares the linear ranges, Limits of Detection (LODs), reproducibility, and
reusability of the electrodes reported so far.
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Affiliation(s)
- Hana Beigizadeh
- Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
| | - Mohammad Reza Ganjali
- Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
| | - Parviz Norouzi
- Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
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24
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Pourbasheer E, Azari Z, Ganjali MR. Recent Advances in Biosensors Based Nanostructure for Pharmaceutical Analysis. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180319152853] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
The development of novel nanostructures for pharmaceutical analysis has received
great attention. Biosensors are a class of analytical techniques competent in the rapid quantification
of drugs. Recently, the nanostructures have been applied for modification of biosensors.
Objective:
The goal of the present study is to review novel nanostructures for pharmaceutical analysis
by biosensors.
Method:
In this review, the application of different biosensors was extensively discussed.
Results:
Biosensors based nanostructures are a powerful alternative to conventional analytical techniques,
enabling highly sensitive, real-time, and high-frequency monitoring of drugs without extensive
sample preparation. Several examples of their application have been reported.
Conclusion:
The present paper reviews the recent advances on the pharmaceutical analysis of biosensor
based nanostructures.
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Affiliation(s)
- Eslam Pourbasheer
- Department of Chemistry, Payame Noor University, P.O. Box 19395-3697, Tehran, Iran
| | - Zhila Azari
- Department of Chemistry, Payame Noor University, P.O. Box 19395-3697, Tehran, Iran
| | - Mohammad Reza Ganjali
- Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
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25
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Hosseini F, Ebrahimi M, Karimi-Maleh H. Electrochemical Determination of Mycophenolate Mofetil in Drug Samples Using Carbon Paste Electrode Modified with 1-methyl-3-butylimidazolium Bromide and NiO/SWCNTs Nanocomposite. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180326114345] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
The mycophenolate mofetil is an immunosuppressant drug with wide application
in the treatment of cancer and prevent rejection in organ transplantation. This drug showed many
sides effects for pregnant women and determination of this drug is very important in the human body.
Objective:
A new electrochemical strategy was described for analysis of Mycophenolate Mofetil
(MMF) using novel voltammetric sensor. The sensor was fabricated using NiO/SWCNTs and 1-methyl-
3-butylimidazolium bromide as two conductive mediators for modification of carbon paste electrode
(NiO/SWCNTs/MBBr/CPE). The NiO/SWCNTs/MBBr/CPE can be used for analysis of MMF in
aqueous buffer solution in the concentration range of 0.08-900 µM. In addition, the NiO/SWCNTs/
MBBr/CPE reduced oxidation over-potential of MMF ~ 80 mV and increased the oxidation current of
MMF ~ 2.85 times. In the final step, NiO/SWCNTs/MBBr/CPE was used for determination of MMF in
pharmaceutical serum and tablet samples.
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Affiliation(s)
- Firuzeh Hosseini
- Department of Chemistry, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Mahmoud Ebrahimi
- Department of Chemistry, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Hassan Karimi-Maleh
- Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
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26
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Karimi F, Bijad M, Farsi M, Vahid A, Asari-Bami H, Wen Y, Ganjali MR. A New Nanostructure Square Wave Voltammetric Platform for Determination of Tert-butylhydroxyanisole in Food Samples. CURR ANAL CHEM 2019. [DOI: 10.2174/1573411014666180320114427] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Antioxidants are one of the important additives in food samples due to their
role in protecting human cells against the effects of free radicals. The analysis of antioxidants is
essential due to the role of antioxidants in improving body health.
Objective:
A square wave voltammetric sensor was fabricated for the determination of tert-butylhydroxyanisole
(TBHA) based on the application of CdO/SWCNTs and 1-methyl-3-butylimidazolium
chloride as mediators for the modification of carbon paste electrode (MBCl/CdO/SWCNTs/CPE). The
MBCl/CdO/SWCNTs/CPE improved the sensitivity of TBHA ~ 6.7 times and showed a linear dynamic
range 0.07-600 µM with detection limit 0.02 µA for the analysis of TBHA. The pH investigation confirmed
that electro-oxidation of TBHA occurred by exchanging two electrons and two protons. In addition,
the MBCl/CdO/SWCNTs/CPE was used for determination of TBHA in food samples.
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Affiliation(s)
- Fatemeh Karimi
- Department of Chemical Engineering, Laboratory of Nanotechnology, Quchan University of Technology, Quchan, Iran
| | - Majede Bijad
- Department of Agriculture, Sari Branch, Islamic Azad University, Sari, Iran
| | - Mohammad Farsi
- Department of Agriculture, Sari Branch, Islamic Azad University, Sari, Iran
| | - Amir Vahid
- Research Institute of Petroleum Industry, Tehran, Iran
| | - Hesam Asari-Bami
- Department of Agriculture, Sari Branch, Islamic Azad University, Sari, Iran
| | - Yangping Wen
- Institute of Functional Materials and Agricultural Applied Chemistry, Jiangxi Agricultural University, Nanchang 330045, China
| | - Mohammad Reza Ganjali
- Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran, Iran
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27
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Karimi-Maleh H, Sheikhshoaie M, Sheikhshoaie I, Ranjbar M, Alizadeh J, Maxakato NW, Abbaspourrad A. A novel electrochemical epinine sensor using amplified CuO nanoparticles and an-hexyl-3-methylimidazolium hexafluorophosphate electrode. NEW J CHEM 2019. [DOI: 10.1039/c8nj05581e] [Citation(s) in RCA: 185] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
This study suggests a carbon paste electrode modified with CuO nanoparticles andn-hexyl-3-methylimidazolium hexafluorophosphate (CPE/CuO-NPs/HMIPF6) as a powerful tool for the analysis of epinine for the first time.
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Affiliation(s)
- Hassan Karimi-Maleh
- Department of Chemical Engineering
- Laboratory of Nanotechnology
- Quchan University of Advanced Technology
- Quchan
- Iran
| | - Mahdieh Sheikhshoaie
- Department of Chemistry, Shahid Bahonar University
- Kerman
- Iran
- Young Research Society
- Shahid Bahonar University of Kerman
| | | | | | - Javad Alizadeh
- Young Research Society
- Shahid Bahonar University of Kerman
- Kerman
- Iran
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28
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Chen T, Liu Y, Lu J, Xing J, Li J, Liu T, Xue Q. Highly efficient detection of ciprofloxacin in water using a nitrogen-doped carbon electrode fabricated through plasma modification. NEW J CHEM 2019. [DOI: 10.1039/c9nj03511g] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We developed a novel electrochemical sensor based on nitrogen plasma modification to effectively detect ciprofloxacin in water.
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Affiliation(s)
- Tao Chen
- Beijing Key Laboratory of Water Resources and Environmental Engineering, School of Water Resources and Environment
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Yiran Liu
- Beijing Key Laboratory of Water Resources and Environmental Engineering, School of Water Resources and Environment
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Jinghao Lu
- Beijing Key Laboratory of Water Resources and Environmental Engineering
- School of Science
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Jie Xing
- Beijing Key Laboratory of Water Resources and Environmental Engineering
- School of Science
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Jiawei Li
- Beijing Key Laboratory of Water Resources and Environmental Engineering, School of Water Resources and Environment
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Ting Liu
- Beijing Key Laboratory of Water Resources and Environmental Engineering, School of Water Resources and Environment
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
| | - Qiang Xue
- Beijing Key Laboratory of Water Resources and Environmental Engineering, School of Water Resources and Environment
- China University of Geosciences (Beijing)
- Beijing 100083
- P. R. China
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29
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Fatin MF, Rahim Ruslinda A, Gopinath SCB, Arshad MKM. High-performance interactive analysis of split aptamer and HIV-1 Tat on multiwall carbon nanotube-modified field-effect transistor. Int J Biol Macromol 2018; 125:414-422. [PMID: 30529550 DOI: 10.1016/j.ijbiomac.2018.12.066] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 12/04/2018] [Accepted: 12/06/2018] [Indexed: 12/27/2022]
Abstract
Interaction between split RNA aptamer and the clinically important target, HIV-1 Tat was investigated on a biosensing surface transduced by functionally choreographed multiwall carbon nanotubes (MWCNTs). Acid oxidation was performed to functionalize MWCNTs with carboxyl functional groups. X-ray photoelectron spectroscopy analysis had profound ~2.91% increment in overall oxygen group and ~1% increment was noticed with a specific carboxyl content owing to CO and OCO bonding. The interaction between split RNA aptamer and HIV-1 Tat protein was quantified by electrical measurements with the current signal (Ids) over a gate voltage (Vgs). Initially, 34.4 mV gate voltage shift was observed by the immobilization of aptamer on MWCNT. With aptamer and HIV-1 Tat interaction, the current flow was decreased with the concomitant gate voltage shift of 23.5 mV. The attainment of sensitivity with split aptamer and HIV-1 Tat interaction on the fabricated device was 600 pM. To ensure the genuine interaction of aptamer with HIV-1 Tat, other HIV-1 proteins, Nef and p24 were interacted with aptamer and they displayed the negligible interferences with gate voltage shift of 3.5 mV and 5.7 mV, which shows 4 and 2.5 folds lesser than HIV-1 Tat interaction, respectively.
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Affiliation(s)
- M F Fatin
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis, Kangar 01000, Perlis, Malaysia
| | - A Rahim Ruslinda
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis, Kangar 01000, Perlis, Malaysia.
| | - Subash C B Gopinath
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis, Kangar 01000, Perlis, Malaysia; School of Bioprocess Engineering, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia
| | - M K Md Arshad
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis, Kangar 01000, Perlis, Malaysia; School of Microelectronic Engineering, Universiti Malaysia Perlis, 02600 Arau, Pauh putra, Perlis, Malaysia
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30
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Ning J, Liu L, Luo X, Wang M, Liu D, Hou R, Chen D, Wang J. Abnormal Anionic Porphyrin Sensing Effect for HER2 Gene Related DNA Detection via Impedance Difference between MWCNTs and Single-Stranded DNA or Double-Stranded DNA. Molecules 2018; 23:molecules23102688. [PMID: 30340409 PMCID: PMC6222431 DOI: 10.3390/molecules23102688] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 10/12/2018] [Accepted: 10/16/2018] [Indexed: 01/25/2023] Open
Abstract
Human epidermal growth factor receptor 2 (HER2) is a key tumor marker for several common and deadly cancers. It is of great importance to develop efficient detection methods for its over-expression. In this work, an electrochemical impedance spectroscopy (EIS) method adjustable by anionic porphyrin for HER2 gene detection has been proposed, based on the impedance difference between multi-walled carbon nanotubes (MWCNTs) and DNA. The interesting finding herein is that with the addition of anionic porphyrin, i.e., meso-tetra(4-sulfophenyl)-porphyrin (TSPP), the impedance value obtained at a glass carbon electrode (GCE) modified with MWCNTs and a single stranded DNA (ssDNA), the probe DNA that might be assembled tightly onto MWCNTs through π-π stacking interaction, gets a slight decrease; however, the impedance value from a GCE modified with MWCNTs and a double stranded DNA (dsDNA), the hybrid of the probe DNA with a target DNA, which might be assembled loosely onto MWCNTs for the screening effect of phosphate backbones in dsDNA, gets an obvious decrease. The reason may be that on the one hand, being rich in negative sulfonate groups, TSPP will try to push DNA far away from CNTs surface due to its strong electrostatic repulsion towards DNA; on the other hand, rich in planar phenyl or pyrrole rings, TSPP will compete with DNA for the surface of CNTs since it can also be assembled onto CNTs through conjugative interactions. In this way, the “loosely assembled” dsDNA will be repelled by this anionic porphyrin and released off CNTs surface much more than the “tightly assembled” ssDNA, leading to a bigger difference in the impedance value between dsDNA and ssDNA. Thus, through the amplification effect of TSPP on the impedance difference, the perfectly matched target DNA could be easily determined by EIS without any label. Under the optimized experimental conditions, this electrochemical sensor shows an excellent linear response to target DNA in a concentration range of 2.0 × 10−11–2.0 × 10−6 M with a limit of detection (LOD) of 6.34 × 10−11 M (S/N = 3). This abnormally sensitive electrochemical sensing performance resulting from anionic porphyrin for DNA sequences specific to HER2 gene will offer considerable promise for tumor diagnosis and treatment.
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Affiliation(s)
- Jingheng Ning
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Long Liu
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Xin Luo
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Min Wang
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Donglin Liu
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Rong Hou
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Donger Chen
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
| | - Jianhui Wang
- School of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410110, China.
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31
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Jarchi S, Ataei F, Hosseinkhani S. Mutation of conserved residues K329 and R330 on the surface of firefly luciferase: Effect on proteolytic degradation. Int J Biol Macromol 2018; 115:324-330. [DOI: 10.1016/j.ijbiomac.2018.04.050] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 04/08/2018] [Accepted: 04/10/2018] [Indexed: 10/17/2022]
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32
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Yang T, Fu J, Zheng S, Yao H, Jin Y, Lu Y, Liu H. Biomolecular logic devices based on stimuli-responsive PNIPAM-DNA film electrodes and bioelectrocatalysis of natural DNA with Ru(bpy)32+ as mediator. Biosens Bioelectron 2018; 108:62-68. [DOI: 10.1016/j.bios.2018.02.048] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Revised: 02/21/2018] [Accepted: 02/22/2018] [Indexed: 11/16/2022]
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33
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An analytical strategy for quantitative analysis of sulfite in the presence of nitrite uses carbon paste electrode amplified with acetylferrocene and NiO nanoparticle. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2018. [DOI: 10.1007/s13738-018-1334-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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34
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Sun Q, Li J, Le T, Zhang L. A Novel Voltammetric Sensor Based on Reduced Graphene Oxide-Platinum Nanohybrid-modified Electrode for Facile and Effective Determination of 4-Chlorophenol in Real Water Samples. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11439] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Qi Sun
- College of Life Sciences; Chongqing Normal University; Chongqing 401331 China
| | - Jianmei Li
- Chongqing Vocational College of Light Industry; Chongqing 400065 China
| | - Tao Le
- College of Life Sciences; Chongqing Normal University; Chongqing 401331 China
| | - Lei Zhang
- College of Life Sciences; Chongqing Normal University; Chongqing 401331 China
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35
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Salih FE, Oularbi L, Halim E, Elbasri M, Ouarzane A, El Rhazi M. Conducting Polymer/Ionic Liquid Composite Modified Carbon Paste Electrode for the Determination of Carbaryl in Real Samples. ELECTROANAL 2018. [DOI: 10.1002/elan.201800152] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Fatima Ezzahra Salih
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
| | - Larbi Oularbi
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
| | - El Halim
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
| | - Miloud Elbasri
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
| | - Aicha Ouarzane
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
| | - Mama El Rhazi
- Laboratory of Materials, Membranes and Environment, Faculty of sciences and Technologies -BP 146 Mohammedia 20650; University Hassan II of Casablanca; Morocco
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36
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Mert S, Bankoğlu B, Özkan A, Atar N, Yola ML. Electrochemical sensing of ractopamine by carbon nitride nanotubes/ionic liquid nanohybrid in presence of other β-agonists. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.01.066] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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37
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Benvidi A, Rezaeinasab M, Gharaghani S, Abbasi S. Monitoring the protective ability of thymoquinone mixture with p-cymene against bovine serum albumin (BSA) glycation: MCR-ALS analysis based on combined spectroscopic and electrochemical methods. Int J Biol Macromol 2018; 107:2465-2474. [DOI: 10.1016/j.ijbiomac.2017.10.135] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Revised: 10/19/2017] [Accepted: 10/20/2017] [Indexed: 12/27/2022]
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38
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Alavi-Tabari SAR, Khalilzadeh MA, Karimi-Maleh H, Zareyee D. An amplified platform nanostructure sensor for the analysis of epirubicin in the presence of topotecan as two important chemotherapy drugs for breast cancer therapy. NEW J CHEM 2018. [DOI: 10.1039/c7nj04430e] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Epirubicin (EB) and topotecan (TP) are two major anticancer drugs that are used in breast cancer therapy with many side effects.
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Affiliation(s)
| | | | - Hassan Karimi-Maleh
- Department of Chemical Engineering
- Laboratory of Nanotechnology
- Quchan University of Technology
- Quchan
- Islamic Republic of Iran
| | - Daryoush Zareyee
- Department of Chemistry
- Qaemshahr Branch
- Islamic Azad University
- Qaemshahr
- Iran
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39
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Yola ML, Göde C, Atar N. Determination of rutin by CoFe2O4 nanoparticles ionic liquid nanocomposite as a voltammetric sensor. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.072] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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40
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An Electrochemical Sensor for Analysis of Food Red 17 in the Presence of Tartrazine in Food Products Amplified with CdO/rGO Nanocomposite and 1,3-Dipropylimidazolium Bromide. FOOD ANAL METHOD 2017. [DOI: 10.1007/s12161-017-1035-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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